View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6079_low_12 (Length: 394)
Name: NF6079_low_12
Description: NF6079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6079_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 376
Target Start/End: Original strand, 14084661 - 14085021
Alignment:
| Q |
14 |
gaagcaacaaaggaacccagaaggccaaaagtggcctttgcaaattggaagcttttctcatgattgagaaattcaacaaggccacaaaagaaagagtgat |
113 |
Q |
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| T |
14084661 |
gaagcaacaaaggaacccagaaggccaaaagtggcctttgcaaattggaagcttttctcatgattgagaaattcaacaaggccacaaaagaaagagtgat |
14084760 |
T |
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| Q |
114 |
ttagaagtgaaaggtgaaaagagaaattgtttgaagacttagcttgagatacaagtgtcacaaacttgcattatttatactataaggtagtaagggttta |
213 |
Q |
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| T |
14084761 |
ttagaagtgaaaggtgaaaagagaaattgtttgaagacttagcttgagatataagtgtcacaaacttgcattatttatactataagctagtaagggttta |
14084860 |
T |
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| Q |
214 |
attaatagtacatagtgacttacatcagtattactttttgtgattgaatatattcctagattattggtggttggaagaggggttaattgtgtttagcacc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14084861 |
attaatagtacatagtgacttacatcagtattactttttgtgattgaatatattcctagattattggtggttggaaga--ggttaattgtgtttagcacc |
14084958 |
T |
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| Q |
314 |
gtttttgtggctgatggttgtaaccattatctttccattaatggagcctccaaagttaggtgt |
376 |
Q |
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| T |
14084959 |
gtttttgtggctgatggttgtaaccattatctttccattaatggagcctccaaagttaggtgt |
14085021 |
T |
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