View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6079_low_15 (Length: 349)
Name: NF6079_low_15
Description: NF6079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6079_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 333
Target Start/End: Complemental strand, 38945948 - 38945625
Alignment:
| Q |
10 |
catcatcaaatacctaaacaatgaaatgaagtttttgttccatttcactccattccatcatgtttcattcagctttattccatcaattcaaacatagcat |
109 |
Q |
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| T |
38945948 |
catcatcaaatacctaaacaatgaaatgaagtttttgttccatttcgctccattccatcatgtttcattccgctttgttccatcaattcaaacataacat |
38945849 |
T |
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| Q |
110 |
tttaaacatagccttaaaatgaatttttacgatgacgagaagataagcttaccaacacaaattttaaaatataaaagagaaattattttcataaaataat |
209 |
Q |
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| T |
38945848 |
tttaaacatagccttaaaatgaatttttacgatgacgagaagataagcttaccaacacaaattttaaaatataaaagagaaattattttcataaaataat |
38945749 |
T |
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| Q |
210 |
tacggagtctaatacccgacacaccnnnnnnnattttatatgtcattagcgcttttttggtatgtcttttacgagtttagtcgattgatatatatcattt |
309 |
Q |
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| T |
38945748 |
tacggagtctaatacccgacacacctttttttattttatatgtcattagcgcttttttggtatgtcttttacgagtttagtcgattgatatatatcattt |
38945649 |
T |
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| Q |
310 |
tctagcttttatcttatcaagaat |
333 |
Q |
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|||||||||||||||||||||||| |
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| T |
38945648 |
tctagcttttatcttatcaagaat |
38945625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 15024070 - 15024119
Alignment:
| Q |
18 |
aatacctaaacaatgaaatgaagtttttgttccatttcactccattccat |
67 |
Q |
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|||||||||||||| |||| ||||||||||||||| | ||||||||||| |
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| T |
15024070 |
aatacctaaacaatagaatgcagtttttgttccattccgctccattccat |
15024119 |
T |
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