View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6079_low_18 (Length: 275)
Name: NF6079_low_18
Description: NF6079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6079_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 32 - 268
Target Start/End: Complemental strand, 30441166 - 30440917
Alignment:
| Q |
32 |
gcaaagctgtaaacgtgcgtatattttccatgcacatttatatggttgtgcaactgtgtgt---ataaagcagttcccatgtaaagttaaaagtaacatt |
128 |
Q |
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| T |
30441166 |
gcaaagctgtaaacgtgcgtatattttccatgcacatttatatggttgtgcaactgtgtgtataataaagcagttcccatgtaaagttaaaagtaacatt |
30441067 |
T |
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| Q |
129 |
gtaaatgacaaatgttccaatgc------aaatnnnnnnncgctcaatgcctctcaacattgtaaatgacaaatatttcacacgctcaatgcctcttaac |
222 |
Q |
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| T |
30441066 |
gtaaatgacaaatgttccaatgcaaaaaaaaaaaaaaaaacgctcaatgcctcttaacattgtaaatgacaaatatttcacacgctcaatgcctcttaac |
30440967 |
T |
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| Q |
223 |
aacaaaaaa----gtgactcttctctctcattctctcccggtctctgctc |
268 |
Q |
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| T |
30440966 |
aaaaaaaaaaaacgtgactcttctctctcattctcttccggtcactgctc |
30440917 |
T |
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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 16961568 - 16961515
Alignment:
| Q |
88 |
tgtgtataaagcagttcccatgtaaagttaaaagtaacattgtaaatgacaaat |
141 |
Q |
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| T |
16961568 |
tgtgtataaagcagttcccatgtaaagttaaaagtaacattgtaaatgacaaat |
16961515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 25867475 - 25867528
Alignment:
| Q |
88 |
tgtgtataaagcagttcccatgtaaagttaaaagtaacattgtaaatgacaaat |
141 |
Q |
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| T |
25867475 |
tgtgtataaagcagttcccatgtaaagttaaaagtaacatcgtaaatgacaaat |
25867528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 4091541 - 4091594
Alignment:
| Q |
88 |
tgtgtataaagcagttcccatgtaaagttaaaagtaacattgtaaatgacaaat |
141 |
Q |
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| T |
4091541 |
tgtgtataaagcagttcccatgtaaagttaaaaataacattgtaaatgacaaat |
4091594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 47520945 - 47520998
Alignment:
| Q |
88 |
tgtgtataaagcagttcccatgtaaagttaaaagtaacattgtaaatgacaaat |
141 |
Q |
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| T |
47520945 |
tgtgtataaagcagttccgatgtaaagttaaaagtaacattgtaaatgacaaat |
47520998 |
T |
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