View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6079_low_19 (Length: 256)
Name: NF6079_low_19
Description: NF6079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6079_low_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 580977 - 580749
Alignment:
| Q |
10 |
attattctaaaaataaattacttcaagatcatgacattcattgttaaaaacactaaagaataatatacttacctttgatgattcgaatttgatagatttt |
109 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
580977 |
attattataaaaataaattacttcaagatcatgacattcattgttaaaaacactaaagaataatatacttacctttgatgactcgaatttgatagatttt |
580878 |
T |
|
| Q |
110 |
gagtgactgaattcaccaagaagtgcagcagcatggaaatctgacatataacttacaaagtgttggctctcatataaattgattttagccgaagcatggc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
580877 |
gagtgactgaattcaccaagaagtgcagcagcatggaaatctgacatataacttacaaagtgttggctctcatataaattgattttagctgaagcatggc |
580778 |
T |
|
| Q |
210 |
atggggacttaattataatgttttgtgat |
238 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
580777 |
atggggacttaattataatgttttgtgat |
580749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 1214381 - 1214321
Alignment:
| Q |
176 |
ctctcatataaattgattttagccgaagcatggcatggggacttaattataatgttttgtg |
236 |
Q |
| |
|
||||||| |||| ||||||||| |||||||||||||||||| | |||| ||||| ||||| |
|
|
| T |
1214381 |
ctctcatgtaaaatgattttagtagaagcatggcatggggacgtcattaaaatgtgttgtg |
1214321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University