View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6079_low_2 (Length: 801)
Name: NF6079_low_2
Description: NF6079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6079_low_2 |
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| [»] scaffold0103 (2 HSPs) |
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| [»] scaffold0561 (1 HSPs) |
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| [»] scaffold0226 (2 HSPs) |
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| [»] scaffold0359 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 18 - 518
Target Start/End: Complemental strand, 13486448 - 13485944
Alignment:
| Q |
18 |
tattcatcataatgtctccttaagatgtcatgacattatactgcaacaacttgagtgctattaatatttctaagaatctcattcaacatagtagaaccaa |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13486448 |
tattcatcataatgtctccttaagatgtcatgacattatactgcaaaaacttgagtgctattaatatttctaagaatctcattcaacatagtagaaccaa |
13486349 |
T |
|
| Q |
118 |
gcacattgacattcatcatcatttcatcaaggaacatgttgaatattaagttatgaaccatgagtatgtagcaaatgaacaacaacaggcagatatttta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13486348 |
gcacattgacattcatcatcatttcatcacggaacatgttgaatattaagttatgaaccatgagtatgtagcaaatgaacaacaacaggcagatatttta |
13486249 |
T |
|
| Q |
218 |
actaaggtgccaaatgttgttcagtttgagaaattaaggggctctttaggtttttgcttgtatgagagtttatagaaattacagtcgtggaagcatgcaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13486248 |
actaaggtgccaaatgttgttcagtttgagaaattaaggggctctttaggtttttgcttgtatgagagtttatagaaattacagtcgtggaagcatgcaa |
13486149 |
T |
|
| Q |
318 |
atggatactttctatttactatatctaaagatgcacgagaaataaggaaaatcattgccattttgaaaactacggaaaatgtaagttct----atgcttc |
413 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| || ||||||||||||||| ||||||| |
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| T |
13486148 |
atggatactttctatttactatatctaaagatgcacaagaaatatggaaaatcattgccattttgaaaaccactgaaaatgtaagttctcttgatgcttc |
13486049 |
T |
|
| Q |
414 |
atccgtaccggtcaatgttcccacaaaccattttgattatgtggatnnnnnnnttatgatgttactgaaacttcaattattgctccagttattgcatgtt |
513 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13486048 |
atccgtaccggccaatgttcccacaaaccattttgattatgtggataaaaaaattatgatgttactgaaacttcaattattgctccagttattgcatgtt |
13485949 |
T |
|
| Q |
514 |
gaacc |
518 |
Q |
| |
|
||||| |
|
|
| T |
13485948 |
gaacc |
13485944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 512 - 634
Target Start/End: Complemental strand, 13485920 - 13485798
Alignment:
| Q |
512 |
ttgaacctaatattgatcttgtttttaaaacttctgtcaaacaatgtgttgagtttgtgagtcaagtagatcttatctctaataaggttgttaaaccatc |
611 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13485920 |
ttgaacctaatattgatcttgtttttaaaacctctgtcaaacaatgtgttgagtttatgagtcaagtagatcttatctctaataaggttgttaaaccatc |
13485821 |
T |
|
| Q |
612 |
tagtacacttgatatttttgttg |
634 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
13485820 |
tagtacacttgatatttttgttg |
13485798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 654 - 790
Target Start/End: Complemental strand, 13485746 - 13485612
Alignment:
| Q |
654 |
tcttgtttctgaaacatcaactgagaccaaataaatcaacaaaagaaaccgcccctaatgatgttggaccatcccatgtccaattagatattatctttga |
753 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13485746 |
tcttgtttctgaaacatcaactga--ccaaataaatcaacaaaagaaaccgccgctaatgattttggaccatcccatgtccaattagatattatctttga |
13485649 |
T |
|
| Q |
754 |
actttcttttggaaatgttgttgatgtgtctgtgctc |
790 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
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| T |
13485648 |
actttcttttgaaaatgttgttgatgtgtctgtgctc |
13485612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 83; Significance: 7e-39; HSPs: 2)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 122 - 340
Target Start/End: Original strand, 29566 - 29784
Alignment:
| Q |
122 |
attgacattcatcatcatttcatcaaggaacatgttgaatattaagttatgaaccatgagtatgtagcaaatgaacaacaacaggcagatattttaacta |
221 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||| | |||||||||||| ||||| ||| ||| ||||||||||| || ||||||| |||| |
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|
| T |
29566 |
attgacatttgtcatcatttcatcacggaacatgttgaaggtaaagttatgaaccttgagtgggtaacaactgaacaacaactaacatatattttcacta |
29665 |
T |
|
| Q |
222 |
aggtgccaaatgttgttcagtttgagaaattaaggggctctttaggtttttgcttgtatgagagtttatagaaattacagtcgtggaagcatgcaaatgg |
321 |
Q |
| |
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|||| |||||||||| || |||||||| ||||||||||| |||||| ||| |||||||||| ||||||| ||||||||| |||||||| |||||| |
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| T |
29666 |
aggtttcaaatgttgtgcaatttgagaagttaaggggctcgttaggtatttatttgtatgagaatttatagcaattacagttgtggaagcgtgcaaacaa |
29765 |
T |
|
| Q |
322 |
atactttctatttactata |
340 |
Q |
| |
|
||||||| | ||||||||| |
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|
| T |
29766 |
atactttttctttactata |
29784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 508 - 634
Target Start/End: Original strand, 36266 - 36392
Alignment:
| Q |
508 |
catgttgaacctaatattgatcttgtttttaaaacttctgtcaaacaatgtgttgagtttgtgagtcaagtagatcttatctctaataaggttgttaaac |
607 |
Q |
| |
|
|||||||||| |||| | |||||||| ||| ||||| |||| |||| |||||||| | | |||||||||||||| | ||||| |||||||||||||| |
|
|
| T |
36266 |
catgttgaacttaatgtcgatcttgtgtttgaaactcctgtgaaaccctgtgttgattatacgagtcaagtagatcatgtctctgataaggttgttaaaa |
36365 |
T |
|
| Q |
608 |
catctagtacacttgatatttttgttg |
634 |
Q |
| |
|
|||||||||||| |||||||||||||| |
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| T |
36366 |
catctagtacacctgatatttttgttg |
36392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 22889211 - 22889274
Alignment:
| Q |
83 |
atttctaagaatctcattcaacatagtagaaccaagcacattgacattcatcatcatttcatca |
146 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||| |||||||||||||||| ||||||||||||| |
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|
| T |
22889211 |
atttccaagaatcttattcaacatagcagaacaaagcacattgacattcgacatcatttcatca |
22889274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0561 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0561
Description:
Target: scaffold0561; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 8287 - 8212
Alignment:
| Q |
71 |
agtgctattaatatttctaagaatctcattcaacatagtagaaccaagcacattgacattcatcatcatttcatca |
146 |
Q |
| |
|
|||||||| || ||||| ||||||| ||||||||||| ||||| ||||||||||| |||| ||||||||||||| |
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|
| T |
8287 |
agtgctatcaacatttccaagaatcctattcaacatagcagaacaaagcacattgatattcgacatcatttcatca |
8212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0226 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0226
Description:
Target: scaffold0226; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 15703 - 15774
Alignment:
| Q |
75 |
ctattaatatttctaagaatctcattcaacatagtagaaccaagcacattgacattcatcatcatttcatca |
146 |
Q |
| |
|
|||| |||||||| ||||| | ||||||||||| ||||| |||||||||| |||||| ||||||||||||| |
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|
| T |
15703 |
ctatcaatatttccaagaaccctattcaacatagcagaacaaagcacattgtcattcaacatcatttcatca |
15774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0226; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 25097 - 25168
Alignment:
| Q |
75 |
ctattaatatttctaagaatctcattcaacatagtagaaccaagcacattgacattcatcatcatttcatca |
146 |
Q |
| |
|
|||| |||||||| ||||| | ||||||||||| ||||| |||||||||| |||||| ||||||||||||| |
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|
| T |
25097 |
ctatcaatatttccaagaaccctattcaacatagcagaacaaagcacattgtcattcaacatcatttcatca |
25168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 18590488 - 18590421
Alignment:
| Q |
77 |
attaatatttctaagaatctcattcaacatagtagaaccaagcacattgacattcatcatcatttcat |
144 |
Q |
| |
|
|||||||| || |||||||||||||||||||| || | ||||| |||||||||| |||||||||||| |
|
|
| T |
18590488 |
attaatatatccaagaatctcattcaacatagaaggaaaaagcatattgacattcgtcatcatttcat |
18590421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0359 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0359
Description:
Target: scaffold0359; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 146
Target Start/End: Complemental strand, 3911 - 3818
Alignment:
| Q |
53 |
ttatactgcaacaacttgagtgctattaatatttctaagaatctcattcaacatagtagaaccaagcacattgacattcatcatcatttcatca |
146 |
Q |
| |
|
|||||||| ||||| | |||| ||| || ||||| ||||||| ||||||||||| ||||| ||||||||||| |||| ||| ||||||||| |
|
|
| T |
3911 |
ttatactgtgacaacctaagtgttatcaacatttccaagaatcctattcaacatagcagaacaaagcacattgatattcgccattatttcatca |
3818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 146
Target Start/End: Complemental strand, 26039348 - 26039255
Alignment:
| Q |
53 |
ttatactgcaacaacttgagtgctattaatatttctaagaatctcattcaacatagtagaaccaagcacattgacattcatcatcatttcatca |
146 |
Q |
| |
|
|||||||| ||||| | |||||||| || ||||| ||||| | |||||| | || ||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
26039348 |
ttatactgtgacaacctaagtgctatcaacatttccaagaaccctattcaataaagaagaacaaagcacattgacattcgacatcatttcatca |
26039255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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