View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6079_low_20 (Length: 253)

Name: NF6079_low_20
Description: NF6079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6079_low_20
NF6079_low_20
[»] chr8 (1 HSPs)
chr8 (1-224)||(29269579-29269802)
[»] scaffold0349 (1 HSPs)
scaffold0349 (1-224)||(18008-18231)
[»] chr6 (10 HSPs)
chr6 (1-224)||(27713713-27713936)
chr6 (5-168)||(26890764-26890927)
chr6 (1-133)||(26853972-26854104)
chr6 (1-111)||(27422277-27422387)
chr6 (2-111)||(26631770-26631879)
chr6 (2-111)||(26737745-26737854)
chr6 (12-96)||(27651936-27652019)
chr6 (1-66)||(26966414-26966479)
chr6 (1-55)||(31289567-31289621)
chr6 (108-154)||(27651852-27651898)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-111)||(64976-65086)
[»] chr4 (3 HSPs)
chr4 (98-157)||(18682727-18682786)
chr4 (98-147)||(18650319-18650368)
chr4 (98-146)||(18718539-18718587)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 29269802 - 29269579
Alignment:
Q  1 ctgtatggctcttgtgattattaagttattcttgtgtaaaaacacttttctgccaaatcacttttcagagacagaacttgtgtagcagcaacaacatatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29269802 ctgtatggctcttgtgattattaagttattcttgtgtaaaaacacttctctgccaaatcacttttcagagacagaacttgtgtagcagcaacaacatatg 29269703  T
Q  101 tatgtatgattaatttgcttttaataatacaagagtatgtacatattgtgataccgactgatgtttcaaccaaacctctgtccaatgatccatttctcaa 200  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29269702 tatgcatgattaatttgcttttaataatacaagagtatgtagatattgtgataccgactgatgtttcaacgaaacctctgtccaatgatccatttctcaa 29269603  T
Q  201 attaaatagtgtttgattattaac 224  Q
    ||||||||||||||||||||||||    
T  29269602 attaaatagtgtttgattattaac 29269579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 18008 - 18231
Alignment:
Q  1 ctgtatggctcttgtgattattaagttattcttgtgtaaaaacacttttctgccaaatcacttttcagagacagaacttgtgtagcagcaacaacatatg 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  18008 ctgtatgtctcttgtgattattaagttattcttgtgtaaaaacacttctctgccaaatcagttttctgagacagaacttgtgtagcagcaacaacatatg 18107  T
Q  101 tatgtatgattaatttgcttttaataatacaagagtatgtacatattgtgataccgactgatgtttcaaccaaacctctgtccaatgatccatttctcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||    
T  18108 tatgtatgattaatttgcttttaataatacaagagtatgtacatattgtgataccgacagatgtttcaaccaaatcactgtccaatgatccatttctcaa 18207  T
Q  201 attaaatagtgtttgattattaac 224  Q
    ||||| ||||||||||||||||||    
T  18208 attaattagtgtttgattattaac 18231  T

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Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 27713936 - 27713713
Alignment:
Q  1 ctgtatggctcttgtgattattaagttattcttgtgtaaaaacacttttctgccaaatcacttttcagagacagaacttgtgtagcagcaacaacatatg 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  27713936 ctgtatgtctcttgtgattattaagttattcttgtgtaaaaacacttctctgccaaatcagttttctgagacagaacttgtgtagcagcaacaacatatg 27713837  T
Q  101 tatgtatgattaatttgcttttaataatacaagagtatgtacatattgtgataccgactgatgtttcaaccaaacctctgtccaatgatccatttctcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||    
T  27713836 tatgtatgattaatttgcttttaataatacaagagtatgtacatattgtgataccgacagatgtttcaaccaaatcactgtccaatgatccatttctcaa 27713737  T
Q  201 attaaatagtgtttgattattaac 224  Q
    ||||| ||||||||||||||||||    
T  27713736 attaattagtgtttgattattaac 27713713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 26890764 - 26890927
Alignment:
Q  5 atggctcttgtgattattaagttattcttgtgtaaaaacacttttctgccaaatcacttttcagagacagaacttgtgtagcagcaacaacatatgtatg 104  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| |||||||||| ||||| |||||||    
T  26890764 atggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacagaacttatgtagcagcagcaacacatgtatg 26890863  T
Q  105 tatgattaatttgcttttaataatacaagagtatgtacatattgtgataccgactgatgtttca 168  Q
    |||||||||||||||||||| | ||||||||| ||||||||||||||||| ||| |||| ||||    
T  26890864 tatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttca 26890927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 26853972 - 26854104
Alignment:
Q  1 ctgtatggctcttgtgattattaagttattcttgtgtaaaaacacttttctgccaaatcacttttcagagacagaacttgtgtagcagcaacaacatatg 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||| ||||||||||||| |||| ||||  |||| ||     
T  26853972 ctgtatggctcttgtgattaataagttattcttgtgtaaaaacaattttctgccaagtcagttttctgagacagaacttgcgtaggagcagaaacacata 26854071  T
Q  101 tatgtatgattaatttgcttttaataatacaag 133  Q
    |||||||||||||||| ||||||  ||||||||    
T  26854072 tatgtatgattaatttccttttagaaatacaag 26854104  T

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Target: chr6; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 27422387 - 27422277
Alignment:
Q  1 ctgtatggctcttgtgattattaagttattcttgtgtaaaaacacttttctgccaaatcacttttcagagacagaacttgtgtagcagcaacaacatatg 100  Q
    ||||||||||||||| |||| |||| ||||||||||||||| || ||||||||||||||| ||||| |  ||||||||||||| |||||||||||| |||    
T  27422387 ctgtatggctcttgtaattaataaggtattcttgtgtaaaagcagttttctgccaaatcatttttctgcaacagaacttgtgtcgcagcaacaacaaatg 27422288  T
Q  101 tatgtatgatt 111  Q
    |||||||||||    
T  27422287 tatgtatgatt 27422277  T

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Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 26631770 - 26631879
Alignment:
Q  2 tgtatggctcttgtgattattaagttattcttgtgtaaaaacacttttctgccaaatcacttttcagagacagaacttgtgtagcagcaacaacatatgt 101  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||  ||||| |||||||||||||||| |||  |||| || ||||    
T  26631770 tgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttttctcccaaatctgttttctgagacagaacttgtgtcgcataaacagcaaatgt 26631869  T
Q  102 atgtatgatt 111  Q
    ||||||||||    
T  26631870 atgtatgatt 26631879  T

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Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 26737745 - 26737854
Alignment:
Q  2 tgtatggctcttgtgattattaagttattcttgtgtaaaaacacttttctgccaaatcacttttcagagacagaacttgtgtagcagcaacaacatatgt 101  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||  ||||| |||||||||||||||| |||  |||| || ||||    
T  26737745 tgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttttctcccaaatctgttttctgagacagaacttgtgtcgcataaacagcaaatgt 26737844  T
Q  102 atgtatgatt 111  Q
    ||||||||||    
T  26737845 atgtatgatt 26737854  T

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Target: chr6; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 27652019 - 27651936
Alignment:
Q  12 ttgtgattattaagttattcttgtgtaaaaacacttttctgccaaatcacttttcagagacagaacttgtgtagcagcaacaaca 96  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||| ||||  |||||||||||||| ||||||||||||||    
T  27652019 ttgtgattaataagttattcatgtgtaaaaacacttttctgccaaatcagtttt-tgagacagaacttgtttagcagcaacaaca 27651936  T

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Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 26966414 - 26966479
Alignment:
Q  1 ctgtatggctcttgtgattattaagttattcttgtgtaaaaacacttttctgccaaatcacttttc 66  Q
    |||||||||||||| ||||| |||| |||||||||||||||||||||| ||||||||||| |||||    
T  26966414 ctgtatggctcttgagattaataaggtattcttgtgtaaaaacactttgctgccaaatcagttttc 26966479  T

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Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 31289567 - 31289621
Alignment:
Q  1 ctgtatggctcttgtgattattaagttattcttgtgtaaaaacacttttctgcca 55  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||| |||||||    
T  31289567 ctgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttctctgcca 31289621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 27651898 - 27651852
Alignment:
Q  108 gattaatttgcttttaataatacaagagtatgtacatattgtgatac 154  Q
    ||||||||||||||||  ||||||||||| ||||||||||| |||||    
T  27651898 gattaatttgcttttacgaatacaagagtttgtacatattgcgatac 27651852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 64976 - 65086
Alignment:
Q  1 ctgtatggctcttgtgattattaagttattcttgtgtaaaaacacttttctgccaaatcacttttcagagacagaacttgtgtagcagcaacaacatatg 100  Q
    ||||||||||||||| |||| |||| ||||||||||||||| || ||||||||||||||| ||||| |  ||||||||||||| |||||||||||| |||    
T  64976 ctgtatggctcttgtaattaataaggtattcttgtgtaaaagcagttttctgccaaatcatttttctgcaacagaacttgtgtcgcagcaacaacaaatg 65075  T
Q  101 tatgtatgatt 111  Q
    |||||||||||    
T  65076 tatgtatgatt 65086  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 18682786 - 18682727
Alignment:
Q  98 atgtatgtatgattaatttgcttttaataatacaagagtatgtacatattgtgataccga 157  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||| | |||||||    
T  18682786 atgtatgtatgattaaattgcttttaagaatacaagagtatgtacatattttcataccga 18682727  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 18650368 - 18650319
Alignment:
Q  98 atgtatgtatgattaatttgcttttaataatacaagagtatgtacatatt 147  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  18650368 atgtatgtatgattaaattgcttttaagaatacaagagtatgtacatatt 18650319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 18718587 - 18718539
Alignment:
Q  98 atgtatgtatgattaatttgcttttaataatacaagagtatgtacatat 146  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||    
T  18718587 atgtatgtatgattaaattgcttttaagaatacaagagtatgtacatat 18718539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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