View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6079_low_3 (Length: 746)
Name: NF6079_low_3
Description: NF6079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6079_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 655072 - 655569
Alignment:
| Q |
1 |
tgaaacagcggttcatcttttcttacattgtgacatgatttctaaggtgtggaggaaggtaatgaagtggttgaattttaattttatcacccctccaaac |
100 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
655072 |
tgaaacggcggttcatcttttcttacattgtgacatgatttctaaggtgtggaggaaggtaatgaagtggttgaattttaattttatcacccctccaaac |
655171 |
T |
|
| Q |
101 |
ccgttcattcatgttatttgttgggctagggaggtttggtcaaagaagcttaggcgcggggcgtggttaatttggcatgcggttgtttgggttatttgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
655172 |
ccgttcattcatgttatttgttgggctagggaggtttggtcaaagaagcttaggcgcggggcgtggttaatttggcatgcggttgtttgggttatttgga |
655271 |
T |
|
| Q |
201 |
atacgaggaatagccatatttttaacaataaaatccttgatgtgggggagatggtagatcaaattaagatgactttgtggcaatggagtatgagtagatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
655272 |
atacgaggaatagccatatttttaacaataaaatccttgatgtgggggagatggtagatcaaattaagatgactttgtggcaatggagtatgagtagatt |
655371 |
T |
|
| Q |
301 |
gaaaattgcgacgtgtttgtattatgagagatgttggaaccctcctgtttgtcttggttgttgcgttagatcactgtcggttttgggagnnnnnnnggca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
655372 |
gaaaattgcgacgtgtttgtattatgagagatgttggaaccctcctgtttgtcttggttgttgcgttagatcactgtcggttttgggagtttttttggca |
655471 |
T |
|
| Q |
401 |
tttctgtgaggtgcagcctgctgtttgtgtgcttcggctgtgctttccgtttattttttggtggtctaatgcgcgtgttttcctctagggagcgctgc |
498 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
655472 |
tttctgtgaggtgcagcctgctgtttgtgtgcttcggctgtgctttccgtttattttttggtggtctaatgcgcgtgttttcctctagggagcgctgc |
655569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 540 - 738
Target Start/End: Original strand, 655611 - 655809
Alignment:
| Q |
540 |
cctccctgctgtattctcaggttacagggcatgttgttgctgtttttctgttgtgcccttttcttctctttttgagaggttttcgtggcttaataatatt |
639 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
655611 |
cctccctgctgtattctcaggttacagggcatgttgttgctgtttttctgttgtgcccttttcttctctttttgagaggttttcgtggcttaataatatt |
655710 |
T |
|
| Q |
640 |
tgtctgttcatgaaagattccccaaatgcatcatgaaaaatgccactggttagatccaacaaatgccacttttagattcatgccatattcttcgacatc |
738 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
655711 |
tgtctgttcatgaaagattccccaaatgcatcatgaaaaatgccactggttagatccaacaaatgccacttttagattcatgccatattctttgacatc |
655809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 26 - 344
Target Start/End: Original strand, 15623052 - 15623370
Alignment:
| Q |
26 |
cattgtgacatgatttctaaggtgtggaggaaggtaatgaagtggttgaattttaattttatcacccctccaaacccgttcattcatgttatttgttggg |
125 |
Q |
| |
|
|||||||| || ||| |||||| |||||| |||| |||| ||||| ||||||||||| | || |||||||| | || |||||| || ||||||| |
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| T |
15623052 |
cattgtgaaataattgataaggtttggagggaggtcatgagatggttaaattttaatttaactactcctccaaatctttttattcatatttgttgttgga |
15623151 |
T |
|
| Q |
126 |
ctagggaggtttggtcaaagaagcttaggcgcggggcgtggttaatttggcatgcggttgtttgggttatttggaatacgaggaatagccatatttttaa |
225 |
Q |
| |
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| |||||||| ||||| || |||||||| || |||||||||||||||||||||||||| ||||||| ||||| | |||| ||| | |||||||| |
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|
| T |
15623152 |
caagggaggtgtggtctaaaaagcttagacgaggggcgtggttaatttggcatgcggtcatttgggtggtttggcttgcgagaaatgatcgcatttttaa |
15623251 |
T |
|
| Q |
226 |
caataaaatccttgatgtgggggagatggtagatcaaattaagatgactttgtggcaatggagtatgagtagattgaaaattgcgacgtgtttgtattat |
325 |
Q |
| |
|
|| || ||| |||| |||| || ||||| ||| | || || || ||||||||||||||||| |||| ||||||||| | |||||| ||| |||| |
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| T |
15623252 |
taacaagatcattgaggtggaagaaatggtggataagatcaaagtgctagtgtggcaatggagtatgtgtaggttgaaaattcccacgtgtctgttttat |
15623351 |
T |
|
| Q |
326 |
gagagatgttggaaccctc |
344 |
Q |
| |
|
||| | ||||||||||||| |
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|
| T |
15623352 |
gagtggtgttggaaccctc |
15623370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 26 - 344
Target Start/End: Original strand, 15646841 - 15647159
Alignment:
| Q |
26 |
cattgtgacatgatttctaaggtgtggaggaaggtaatgaagtggttgaattttaattttatcacccctccaaacccgttcattcatgttatttgttggg |
125 |
Q |
| |
|
|||||||| || ||| |||||| |||||| |||| |||| ||||| ||||||||||| | || |||||||| | || |||||| || ||||||| |
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| T |
15646841 |
cattgtgaaataattgataaggtttggagggaggtcatgagatggttaaattttaatttaactactcctccaaatctttttattcatatttgttgttgga |
15646940 |
T |
|
| Q |
126 |
ctagggaggtttggtcaaagaagcttaggcgcggggcgtggttaatttggcatgcggttgtttgggttatttggaatacgaggaatagccatatttttaa |
225 |
Q |
| |
|
| |||||||| ||||| || |||||||| || |||||||||||||||||||||||||| ||||||| ||||| | |||| ||| | |||||||| |
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| T |
15646941 |
caagggaggtgtggtctaaaaagcttagacgaggggcgtggttaatttggcatgcggtcatttgggtggtttggcttgcgagaaatgatcgcatttttaa |
15647040 |
T |
|
| Q |
226 |
caataaaatccttgatgtgggggagatggtagatcaaattaagatgactttgtggcaatggagtatgagtagattgaaaattgcgacgtgtttgtattat |
325 |
Q |
| |
|
|| || ||| |||| |||| || ||||| ||| | || || || ||||||||||||||||| |||| ||||||||| | |||||| ||| |||| |
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|
| T |
15647041 |
taacaagatcattgaggtggaagaaatggtggataagatcaaagtgctagtgtggcaatggagtatgtgtaggttgaaaattcccacgtgtctgttttat |
15647140 |
T |
|
| Q |
326 |
gagagatgttggaaccctc |
344 |
Q |
| |
|
||| | ||||||||||||| |
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|
| T |
15647141 |
gagtggtgttggaaccctc |
15647159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 190
Target Start/End: Original strand, 13855419 - 13855571
Alignment:
| Q |
38 |
atttctaaggtgtggaggaaggtaatgaagtggttgaattttaattttatcacccctccaaacccgttcattcatgttatttgttgggctagggaggttt |
137 |
Q |
| |
|
|||||||| || | |||| |||| |||| |||||||||||||||| |||| | |||||||| | || ||||||| ||||||||| |||| || || |
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|
| T |
13855419 |
atttctaaagtttagagggaggtgatgaggtggttgaattttaatcttatttctcctccaaatctattaattcatgcgatttgttggtctagagaagtaa |
13855518 |
T |
|
| Q |
138 |
ggtcaaagaagcttaggcgcggggcgtggttaatttggcatgcggttgtttgg |
190 |
Q |
| |
|
| | ||||||||||| | ||||||||||| ||| |||||||||| |||||| |
|
|
| T |
13855519 |
gagctaagaagcttagacaaggggcgtggttgattaggcatgcggtggtttgg |
13855571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 20988779 - 20988970
Alignment:
| Q |
10 |
ggttcatcttttcttacattgtgacatgatttctaaggtgtggaggaaggtaatgaagtggttgaattttaattttatcacccctccaaacccgttcatt |
109 |
Q |
| |
|
||||||||| ||| | |||||||||||||||||||| |||||| | |||| ||||| ||||||||||||||||||||| | || ||||| |||||| |
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|
| T |
20988779 |
ggttcatctcttccttcattgtgacatgatttctaatgtgtggctggaggtgatgaattggttgaattttaattttatctctcccccaaatttattcatt |
20988878 |
T |
|
| Q |
110 |
catgttatttgttgggctagggaggtttggtcaaagaagcttaggcgcggggcgtggttaatttggcatgcggttgtttgggttatttggaa |
201 |
Q |
| |
|
|||| |||||||||| | || | || || || || ||||| || | ||||||||| |||||||||||||| |||||||| ||||||| |
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|
| T |
20988879 |
catgctatttgttggtcgagacatgtgaggaacaaaaatcttagacgagaggcgtggttgatttggcatgcggtggtttgggtggtttggaa |
20988970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 190
Target Start/End: Original strand, 43459961 - 43460149
Alignment:
| Q |
2 |
gaaacagcggttcatcttttcttacattgtgacatgatttctaaggtgtggaggaaggtaatgaagtggttgaattttaattttatcacccctccaaacc |
101 |
Q |
| |
|
||||| ||||| ||||||||| | |||||||| |||||||||| |||||| || || ||| |||||||||||||||||||| | || |||||| |
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|
| T |
43459961 |
gaaacggcggtacatcttttccttcattgtgatatgatttctagagtgtggcgggttgtgatgggttggttgaattttaattttatttctcccccaaact |
43460060 |
T |
|
| Q |
102 |
cgttcattcatgttatttgttgggctagggaggtttggtcaaagaagcttaggcgcggggcgtggttaatttggcatgcggttgtttgg |
190 |
Q |
| |
|
||||||||| |||||||||| | || | || || ||||||||||| || |||| ||||||||||||||||||||| |||||| |
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|
| T |
43460061 |
tattcattcatactatttgttggtcgagacaagtgagggacaagaagcttagacgaggggtgtggttaatttggcatgcggtggtttgg |
43460149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 177
Target Start/End: Complemental strand, 43226824 - 43226683
Alignment:
| Q |
36 |
tgatttctaaggtgtggaggaaggtaatgaagtggttgaattttaattttatcacccctccaaacccgttcattcatgttatttgttgggctagggaggt |
135 |
Q |
| |
|
||||||| |||||||||| | |||| |||| |||| ||||||||| ||||||||| | ||| || ||| ||||||| || ||||||| || ||||| |
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|
| T |
43226824 |
tgatttcgaaggtgtggacggaggtgatgaggtggctgaattttagttttatcacacatcccaatttgtttattcatgctacttgttggatgagtgaggt |
43226725 |
T |
|
| Q |
136 |
ttggtcaaagaagcttaggcgcggggcgtggttaatttggca |
177 |
Q |
| |
|
|||| || |||||||| || ||||| |||||||||||||| |
|
|
| T |
43226724 |
gcggtctaaaaagcttagacgaggggcttggttaatttggca |
43226683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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