View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6079_low_4 (Length: 690)
Name: NF6079_low_4
Description: NF6079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6079_low_4 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 1 - 658
Target Start/End: Original strand, 23495697 - 23496357
Alignment:
| Q |
1 |
gtgagttcttagatttaagaatcgattattcctgagttatacaattggattatgttaacatggattctagccgtgagaacgatacgagagttttgttctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23495697 |
gtgagttcttagatttaagaatcgattattcctgagttatacaattggagcatgttaacatggattctagccgtgagaacgatacgagagttttgttctt |
23495796 |
T |
|
| Q |
101 |
tgcannnnnnnctcactcatcagagccaataatattacatttgatgtagatgtagacatgtaataacctcccttttcaccaatgaagatgctcaagcaga |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
23495797 |
tgcatttttttttcactcatcagagccaataatattacatttgatgtagatgtagacatgtaataacctcccttttcaccaatgaagatgcttaagcaga |
23495896 |
T |
|
| Q |
201 |
catgtgataataaacaagtcctatatcaaataatgattcatttcagcatggtcatgtatttcaccatctcattctatctaaaggtccaaaatatcattca |
300 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23495897 |
catgtaataataaacaagtcctatatcaaatactgattcatttcagcatggtcatgtatttcaccatctcattctatctaaaggtccaaaatatcattca |
23495996 |
T |
|
| Q |
301 |
atattgcaaagaacatgttggtaattcactacttgaccctctaacctgtttgtcatttagatgcaacatttacaacaaacaaatagaaaaacaccaacgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
23495997 |
atattgcaaagaacatgttggtaattcactacttgaccctctaacctgtttgtcatttagatgcaacatttacaataaacaaatagaaaaacaccaacgt |
23496096 |
T |
|
| Q |
401 |
ggaattgttccatttaacatgttataagacatacctaaaaaatttaattttcattgttcagttgttttagttggaatcagacctattaagttattatgtg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
23496097 |
ggaattgttccatttaacatgttataagacatacctaaaaaatttaattttcattgttcagttgttttagttggaatcagacctattaagttattatatg |
23496196 |
T |
|
| Q |
501 |
ataaatcgaaaaaagaaagaagagtcaaatatatcagtgatgatggaatttgtcctcca---ttgttagtggaatgtacaatttttagagtcgccctatc |
597 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| || |
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|
| T |
23496197 |
ataaatcaaaaaaagaaagaagagtcaaatatatcagtgatgatggaatttgtcctccaaggttgttattggaatgtacaatttttagagtcgccctctc |
23496296 |
T |
|
| Q |
598 |
ccataacaaccgggacagactctaaccctttgcagaatcagccgcctttgcggcaagggca |
658 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23496297 |
ccataacaaccgggacagactctaaccctttgcagaatcagccgcctttgcggcaagggca |
23496357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 385 - 427
Target Start/End: Original strand, 14553510 - 14553552
Alignment:
| Q |
385 |
agaaaaacaccaacgtggaattgttccatttaacatgttataa |
427 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
14553510 |
agaataacaccaatgtggaattgttccatttaacatgttataa |
14553552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 37400572 - 37400532
Alignment:
| Q |
385 |
agaaaaacaccaacgtggaattgttccatttaacatgttat |
425 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||| |
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|
| T |
37400572 |
agaataacaccaatgtggaattgttccatttaacatgttat |
37400532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 37533500 - 37533540
Alignment:
| Q |
385 |
agaaaaacaccaacgtggaattgttccatttaacatgttat |
425 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37533500 |
agaataacaccaatgtggaattgttccatttaacatgttat |
37533540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 37594724 - 37594764
Alignment:
| Q |
385 |
agaaaaacaccaacgtggaattgttccatttaacatgttat |
425 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37594724 |
agaataacaccaatgtggaattgttccatttaacatgttat |
37594764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 37640272 - 37640312
Alignment:
| Q |
385 |
agaaaaacaccaacgtggaattgttccatttaacatgttat |
425 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37640272 |
agaataacaccaatgtggaattgttccatttaacatgttat |
37640312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 37697187 - 37697227
Alignment:
| Q |
385 |
agaaaaacaccaacgtggaattgttccatttaacatgttat |
425 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37697187 |
agaataacaccaatgtggaattgttccatttaacatgttat |
37697227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 37703068 - 37703108
Alignment:
| Q |
385 |
agaaaaacaccaacgtggaattgttccatttaacatgttat |
425 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37703068 |
agaataacaccaatgtggaattgttccatttaacatgttat |
37703108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 385 - 424
Target Start/End: Original strand, 37824295 - 37824334
Alignment:
| Q |
385 |
agaaaaacaccaacgtggaattgttccatttaacatgtta |
424 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
37824295 |
agaataacaccaatgtggaattgttccatttaacatgtta |
37824334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 390 - 426
Target Start/End: Original strand, 37436112 - 37436148
Alignment:
| Q |
390 |
aacaccaacgtggaattgttccatttaacatgttata |
426 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37436112 |
aacaccactgtggaattgttccatttaacatgttata |
37436148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 37712024 - 37712064
Alignment:
| Q |
385 |
agaaaaacaccaacgtggaattgttccatttaacatgttat |
425 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37712024 |
agaataacaccactgtggaattgttccatttaacatgttat |
37712064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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