View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6079_low_7 (Length: 535)
Name: NF6079_low_7
Description: NF6079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6079_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Original strand, 43818087 - 43818618
Alignment:
| Q |
1 |
taatgttctctaattcctttgttctatactttagcatcatgcttagcttcatcgtgttattactgtgaagtattttaattcttaggagaggtagtttttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43818087 |
taatgttctctaattcctttgttctatactttagcaccatgcttagcatcatcgtgttattactgtgaagtattttaattcttaggagaggtagtttttg |
43818186 |
T |
|
| Q |
101 |
gtgtcccgccaatatgcggcacctgttatttgtttctcttttttcgtatttatctgcgaccggaacagctttttgtagaattcggcgtggataatattag |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
43818187 |
gtgtcccgccaatatgtggcacctgttatttgtttcgcttttttcgtatttatctgcgaccggtacggctttttgtagaattcggcgtggataatattag |
43818286 |
T |
|
| Q |
201 |
ctgattnnnnnnnnnnn----ggtttgttgtttatgtagggagcaacaaaactggggtaccagtaacttttgaacttccattgtcgcgttggtatgcctt |
296 |
Q |
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| T |
43818287 |
ctgattaaaaaaaaaaaaaaaggtttgttgtttatgtagggagcaacaaaactggggtaccagtaacttttgaacttccattgtcgcgttggtatgcctt |
43818386 |
T |
|
| Q |
297 |
ggaacatgttgctattatggtttctattccttattgagcaatgaatttaatttcacaggttgtaggcttttttatggtttctaattctattcctcatgaa |
396 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43818387 |
ggaacatgttgctattgtggtttctattccttattgagcaatgaatttaatttcacaggttgtaggcttttttatggtttctaattctattcctcatgaa |
43818486 |
T |
|
| Q |
397 |
aattacatatgcataacgtttagtacttattgtgtttggtttctggttttcctgaaagtttgtggcaacaagttagttcatcttctttcgggtcatttgg |
496 |
Q |
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| T |
43818487 |
aattacatatgcataatgtttattacttattgtgtttggtttctggttttcctgaaagtttgtggcaacaagttagttcatcttcttttgggtcatttgg |
43818586 |
T |
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| Q |
497 |
atgtgttggtgaagggggtctgttgatgatgt |
528 |
Q |
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| T |
43818587 |
atgtgctggtgaagggggtttgttggtgatgt |
43818618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 19873395 - 19873568
Alignment:
| Q |
25 |
tatactttagcatcatgcttagcttcatcgtgttattactgtgaagtattttaattcttaggagaggtag-tttttggtgtcccgccaatatgcggcacc |
123 |
Q |
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||||||||||||||||||||||| | | | ||| |||||||||||||||||||| ||| || |||| | ||||||||| ||||| |||||||| ||| |
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| T |
19873395 |
tatactttagcatcatgcttagcctatttgggtttttactgtgaagtattttaatccttgagaaaggtggttttttggtgctccgcctatatgcggtacc |
19873494 |
T |
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| Q |
124 |
tgttatttgtttctcttttttcgtatttatctgcgaccggaacagctttttgtagaattcggcgtggataatat |
197 |
Q |
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| || | |||| | |||| ||||| |||||| |||| ||| || |||| ||||| || ||| |||| ||||||| |
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| T |
19873495 |
ttttgtatgttccgctttattcgtttttatccgcgagcggtaccgcttcttgtacaactcgtcgtgaataatat |
19873568 |
T |
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