View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6080_low_1 (Length: 530)
Name: NF6080_low_1
Description: NF6080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6080_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 16 - 516
Target Start/End: Original strand, 11623796 - 11624296
Alignment:
| Q |
16 |
atgcacattggtgagaaagatggtcactgtctcaagagaagaagtgactaacctcaattctcaaacacaatacaaaaaggattatttcttatttaagagt |
115 |
Q |
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| T |
11623796 |
atgcacattggtgagaaagatggtcactgtctcaagagaagaagtgactaacctcaattctcaaacacaatacaaaaaggattatttcttatttaagagt |
11623895 |
T |
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| Q |
116 |
tctcatggaaattaagtgatctagctaaagctgcagggttagccatcaacatcggagaggtttgaacatggtttttaccatctttctttgattgaaaagc |
215 |
Q |
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| T |
11623896 |
tctcatggaaattaagcgatctagctaaagctgcagggttagccatcaacattggagaggtttgaacatggtttttaccatctttctttgattgaaaagc |
11623995 |
T |
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| Q |
216 |
cttagtcataccacctctactcaaaccttcattcttaattccaagtgtttcccaaattgaactctttgcagcttcggttggatcatcaattcgcaatgtt |
315 |
Q |
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| T |
11623996 |
cttagtcataccacctctactcaaaccttcattcttaattccaagtgtttcccaaattgaactctttgcagcttcggttggatcatcaattcgcaatgtt |
11624095 |
T |
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| Q |
316 |
ttaggaaccaaaacacacccatttctttgttttggtgattcttctgtttgcaaatggtcttgtttagctatttcgtcgtcgttgttgtcatcgtccctcg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| | |||||||||||||||||| |
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| T |
11624096 |
ttaggaaccaaaacacacccatttctttgttttggtgattcttctgtttgcaaactgtcttgtttagcattttcgtcgttggtgttgtcatcgtccctcg |
11624195 |
T |
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| Q |
416 |
agtgtttcccgagcgttggagatttcggactagatcttggagttgtcgcgggagtatgaggcggaaaccaaggaacattccaaaaaggagcagggtaaaa |
515 |
Q |
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| T |
11624196 |
agtgtttcccgagcgttggagatttcggactagatcttggagttgtcgcgggagtatgaggcggaaaccaaggaacattccaaaaaggagcagggtaaaa |
11624295 |
T |
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| Q |
516 |
t |
516 |
Q |
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| T |
11624296 |
t |
11624296 |
T |
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