View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6081_high_4 (Length: 250)
Name: NF6081_high_4
Description: NF6081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6081_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 106 - 250
Target Start/End: Complemental strand, 46141068 - 46140924
Alignment:
| Q |
106 |
aaacccatcaaaacacacttgggctagaatctacttaccccacaaaccaacctccaaaaaactaccactcatcgttttctaccatggcggtggcttcatc |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
46141068 |
aaacccatcaaaacacacttgggctagaatctacttaccccacaaaccaacctccaagaaactaccactcatcgttttctaccatggcggtggcttcatc |
46140969 |
T |
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| Q |
206 |
ttttacagcgccgcttcaacttacttccacaacttctgctccaac |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46140968 |
ttttacagcgccgcttcaacttacttccacaacttctgctccaac |
46140924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 32196524 - 32196423
Alignment:
| Q |
14 |
aacctgtgctaaaccctcactcatggctgaacccgaaaccaacaaccacgaagaacccacattccccaccaaacgcaaacccgatcaagaagaaacccat |
113 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32196524 |
aacctgcgctaaaccctcactcatggctgaacccgaaaccaacaaccacgaagaacccacattccccaccaaacgcaaacccgatcaagaagaaacccat |
32196425 |
T |
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| Q |
114 |
ca |
115 |
Q |
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|| |
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| T |
32196424 |
ca |
32196423 |
T |
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