View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6081_low_3 (Length: 325)

Name: NF6081_low_3
Description: NF6081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6081_low_3
NF6081_low_3
[»] chr1 (2 HSPs)
chr1 (2-310)||(50645152-50645460)
chr1 (108-164)||(4016512-4016568)
[»] chr8 (1 HSPs)
chr8 (54-302)||(42846131-42846386)
[»] chr4 (14 HSPs)
chr4 (56-157)||(10482453-10482556)
chr4 (66-165)||(10475477-10475578)
chr4 (56-157)||(10468314-10468416)
chr4 (66-165)||(10464542-10464643)
chr4 (9-228)||(8447307-8447529)
chr4 (88-165)||(10484699-10484778)
chr4 (108-163)||(10553304-10553359)
chr4 (108-163)||(10571034-10571089)
chr4 (7-81)||(5983876-5983950)
chr4 (55-148)||(8443155-8443249)
chr4 (251-297)||(3565870-3565916)
chr4 (246-292)||(10482309-10482355)
chr4 (89-155)||(8437034-8437102)
chr4 (114-162)||(6388492-6388540)
[»] chr3 (1 HSPs)
chr3 (14-163)||(25900933-25901092)
[»] chr5 (1 HSPs)
chr5 (70-157)||(37935348-37935437)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 2 - 310
Target Start/End: Original strand, 50645152 - 50645460
Alignment:
Q  2 atgtggctaagacatcacacaaaatattcacacgctctactgttattaattgacaaggattttaaagcaacatacatgaagaaacgtaaattcaaacaag 101  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50645152 atgtggctaagacatcacacaaaatattcacacgttctactattattaactgacaaggattttaaagcaacatacatgaagaaacgtaaattcaaacaag 50645251  T
Q  102 taatgcggaagagaaactcactttcaatgagtcggaactaaactttcaacgtaatctttggcatttgaccaataaatttcattagtaatcccaatttcaa 201  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  50645252 taatgtggaagagaaactcactttcaatgagtcggaactaaactttcaacgtaatttttggcatttgaccaataaatttcattagtaatcccaatttcaa 50645351  T
Q  202 ctactttattgtctatgcagttatagaaacatgccttgttgccttttgccaataccagtgtatcaccattcttagagagatacaatggcaacaatcccaa 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50645352 ctactttattgtctatgcagttatagaaacatgccttgttgccttttgccaataccagtgtatcaccattcttagagagatacaatggcaacaatcccaa 50645451  T
Q  302 ccaattaaa 310  Q
    |||||||||    
T  50645452 ccaattaaa 50645460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 4016512 - 4016568
Alignment:
Q  108 ggaagagaaactcactttcaatgagtcggaactaaactttcaacgtaatctttggca 164  Q
    |||||||||||| ||||||||  | | ||||||||||||||||| ||||||||||||    
T  4016512 ggaagagaaacttactttcaaaaaattggaactaaactttcaacataatctttggca 4016568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 54 - 302
Target Start/End: Original strand, 42846131 - 42846386
Alignment:
Q  54 acaaggattttaaagcaacatacatgaagaaacgtaaattcaaacaagtaat--gcggaagagaaactcactttcaatgagtcggaactaaactttcaac 151  Q
    ||||||||||||||| || |||||||||||||| ||||||||||||||||||  | ||||||||  ||||||||||||||||||||||||||||||||||    
T  42846131 acaaggattttaaagaaa-atacatgaagaaacataaattcaaacaagtaatatgtggaagagacgctcactttcaatgagtcggaactaaactttcaac 42846229  T
Q  152 gtaatctttggcatttgaccaataaatttcattagtaatcccaatttcaactactttattgtctatgcagttatagaaacatgccttgttgcct------ 245  Q
     |||||  | ||||  ||||||  ||||| ||||||||| ||||||||  ||||||||||||| | || |||||||| | |||| |||  | ||          
T  42846230 ataatccctagcatgcgaccaaataattttattagtaattccaatttcttctactttattgtccacgcggttatagataaatgctttgccgtcttcatga 42846329  T
Q  246 tttgccaataccagtgtatcaccattcttagagagatacaatggcaacaatcccaac 302  Q
    ||||||||||| || ||||| ||| ||||||| ||||||||||||||| ||||||||    
T  42846330 tttgccaatacaagcgtatccccaatcttagaaagatacaatggcaacgatcccaac 42846386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 10482556 - 10482453
Alignment:
Q  56 aaggattttaaagcaacatacatgaagaaacgtaaattcaaacaagtaat--gcggaagagaaactcactttcaatgagtcggaactaaactttcaacgt 153  Q
    ||||||||||||| ||||| ||| ||| ||| ||||||||||||||||||  | |||||||||||||||||||||||||||| ||| |||||||||||||    
T  10482556 aaggattttaaagtaacatgcataaaggaacataaattcaaacaagtaatatgtggaagagaaactcactttcaatgagtcgaaaccaaactttcaacgt 10482457  T
Q  154 aatc 157  Q
    ||||    
T  10482456 aatc 10482453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 10475578 - 10475477
Alignment:
Q  66 aagcaacatacatgaagaaacgtaaattcaaacaagtaat--gcggaagagaaactcactttcaatgagtcggaactaaactttcaacgtaatctttggc 163  Q
    ||||||||||||||||  ||  ||||||||||||||||||  | ||||||||||||||||||||| | |||| ||||||||||||||||||||| |||||    
T  10475578 aagcaacatacatgaaataatataaattcaaacaagtaatatgtggaagagaaactcactttcaacgtgtcgaaactaaactttcaacgtaatccttggc 10475479  T
Q  164 at 165  Q
    ||    
T  10475478 at 10475477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 10468416 - 10468314
Alignment:
Q  56 aaggattttaaagcaacatacatgaagaaacgtaaattcaaacaagtaat--gcggaagagaaactcactttcaatgagtcggaactaaactttcaacgt 153  Q
    ||||||||||||| ||||| ||| ||| ||| ||| ||||||||||||||  | |||||||||||||||||||||||||||  ||| |||||||||||||    
T  10468416 aaggattttaaagtaacatgcataaaggaacataa-ttcaaacaagtaatatgtggaagagaaactcactttcaatgagtcaaaaccaaactttcaacgt 10468318  T
Q  154 aatc 157  Q
    ||||    
T  10468317 aatc 10468314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 10464643 - 10464542
Alignment:
Q  66 aagcaacatacatgaagaaacgtaaattcaaacaagtaat--gcggaagagaaactcactttcaatgagtcggaactaaactttcaacgtaatctttggc 163  Q
    |||||||||| |||||| ||  ||||||| ||||||||||  | ||||||||||||||||||||| | |||| ||||| ||||||||||||||| |||||    
T  10464643 aagcaacataaatgaagtaatataaattctaacaagtaatatgtggaagagaaactcactttcaacgtgtcgaaactagactttcaacgtaatccttggc 10464544  T
Q  164 at 165  Q
    ||    
T  10464543 at 10464542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 228
Target Start/End: Original strand, 8447307 - 8447529
Alignment:
Q  9 taagacatcacacaaaatattca-cacgctctactgttattaattgacaaggattttaaagcaacatacatgaagaaacgtaaattcaaacaagtaat-- 105  Q
    |||| ||||| |||||||||||| |||| | || | |||| || ||||| |||||| || ||||||||||  ||| |||  ||||| |||||||||||      
T  8447307 taagtcatcagacaaaatattcaacacgttatattattatgaaatgacatggatttaaaggcaacatacaccaagtaacaaaaattaaaacaagtaatat 8447406  T
Q  106 gcggaagagaaactcactttcaatgagtcggaactaaactttcaacgtaatctttggcatttgaccaataaatttcattagtaatcccaatttcaactac 205  Q
    | |||| |||||||||| ||||| |||||| ||| ||||||||||||||| || |||| | || ||||   |||| ||||||||| |||||||   ||      
T  8447407 gtggaatagaaactcacattcaacgagtcgaaaccaaactttcaacgtaacctctggcttgtggccaaagtatttgattagtaattccaatttttgctga 8447506  T
Q  206 tttattgtctatgcagttataga 228  Q
    | |||||||| ||||||||||||    
T  8447507 tgtattgtctctgcagttataga 8447529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 10484778 - 10484699
Alignment:
Q  88 taaattcaaacaagtaat--gcggaagagaaactcactttcaatgagtcggaactaaactttcaacgtaatctttggcat 165  Q
    ||||||||||||||||||  | |||||||| |||||||||||| | |||| ||||| ||||||||||||||| |||||||    
T  10484778 taaattcaaacaagtaatatgtggaagagacactcactttcaacgtgtcgaaactagactttcaacgtaatccttggcat 10484699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 10553304 - 10553359
Alignment:
Q  108 ggaagagaaactcactttcaatgagtcggaactaaactttcaacgtaatctttggc 163  Q
    ||||||||||||||||||||  |||| ||||| ||||||||||||||||| |||||    
T  10553304 ggaagagaaactcactttcatcgagttggaaccaaactttcaacgtaatccttggc 10553359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 10571034 - 10571089
Alignment:
Q  108 ggaagagaaactcactttcaatgagtcggaactaaactttcaacgtaatctttggc 163  Q
    ||||||||||||||||||||  |||| ||||| ||||||||||||||||| |||||    
T  10571034 ggaagagaaactcactttcatcgagttggaaccaaactttcaacgtaatccttggc 10571089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 5983876 - 5983950
Alignment:
Q  7 gctaagacatcacacaaaatattcacacgctctactgttattaattgacaaggattttaaagcaacatacatgaa 81  Q
    |||||| ||||||| |||||||||| ||  |||| | |||| || |||||||||||||| |||||||||||||||    
T  5983876 gctaagccatcacagaaaatattcatacattctattattataaactgacaaggattttatagcaacatacatgaa 5983950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 148
Target Start/End: Original strand, 8443155 - 8443249
Alignment:
Q  55 caaggattttaaagcaacatacatgaagaaacgtaaattcaaacaagt-aatgcggaagagaaactcactttcaatgagtcggaactaaactttc 148  Q
    ||||||||| || |||||||||| |||| |||  |||||||||||||| |||| |||| |||||||||| ||||| ||| || ||| ||||||||    
T  8443155 caaggatttaaaggcaacatacacgaagtaacaaaaattcaaacaagtaaatgtggaatagaaactcacattcaacgaggcgaaaccaaactttc 8443249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 3565916 - 3565870
Alignment:
Q  251 caataccagtgtatcaccattcttagagagatacaatggcaacaatc 297  Q
    |||||||||||||||||||| |||||| ||| |||||||||| ||||    
T  3565916 caataccagtgtatcaccatccttagaaagaaacaatggcaagaatc 3565870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 10482355 - 10482309
Alignment:
Q  246 tttgccaataccagtgtatcaccattcttagagagatacaatggcaa 292  Q
    ||||||||||  |||||||||||||||||||| ||| ||||||||||    
T  10482355 tttgccaatattagtgtatcaccattcttagaaagacacaatggcaa 10482309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 8437034 - 8437102
Alignment:
Q  89 aaattcaaacaagtaat--gcggaagagaaactcactttcaatgagtcggaactaaactttcaacgtaa 155  Q
    ||||||||| |||||||  | |||| |||||||||| ||||| |||||| ||| |||||||||||||||    
T  8437034 aaattcaaaaaagtaatatgtggaatagaaactcacattcaacgagtcgaaaccaaactttcaacgtaa 8437102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 6388540 - 6388492
Alignment:
Q  114 gaaactcactttcaatgagtcggaactaaactttcaacgtaatctttgg 162  Q
    ||||||||| ||||||| |||  ||||||||||||||||||||| ||||    
T  6388540 gaaactcacattcaatgtgtcaaaactaaactttcaacgtaatcattgg 6388492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 25900933 - 25901092
Alignment:
Q  14 catcacacaaaatattcacacgctctactgttattaattgacaaggattttaaagcaac--------atacatgaagaaacgtaaattcaaacaagtaat 105  Q
    |||| ||||||||||||||||  |||| | |||| || ||||||||||||||||||||         |||||||||| ||| ||||||| ||||||||||    
T  25900933 catcccacaaaatattcacacaatctattattataaactgacaaggattttaaagcaagtaagcaatatacatgaagtaacataaattctaacaagtaat 25901032  T
Q  106 --gcggaagagaaactcactttcaatgagtcggaactaaactttcaacgtaatctttggc 163  Q
      | | |||||||||||||||||||  ||| | ||| ||||||||||||||||| |||||    
T  25901033 atgagaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttggc 25901092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 37935437 - 37935348
Alignment:
Q  70 aacatacatgaagaaacgtaaattcaaacaagtaat--gcggaagagaaactcactttcaatgagtcggaactaaactttcaacgtaatc 157  Q
    |||||||||| || ||| | ||||| | ||||||||  | |||||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  37935437 aacatacatgcagtaacatgaattctagcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatc 37935348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University