View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6082_high_12 (Length: 401)

Name: NF6082_high_12
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6082_high_12
NF6082_high_12
[»] chr5 (5 HSPs)
chr5 (13-209)||(31570416-31570612)
chr5 (249-386)||(31570239-31570376)
chr5 (125-201)||(18817477-18817553)
chr5 (126-201)||(11351295-11351370)
chr5 (136-201)||(18817075-18817140)
[»] chr3 (3 HSPs)
chr3 (249-386)||(1928108-1928247)
chr3 (134-209)||(1928292-1928367)
chr3 (136-201)||(28702396-28702461)
[»] chr7 (7 HSPs)
chr7 (132-201)||(13863824-13863893)
chr7 (125-201)||(13863425-13863501)
chr7 (125-201)||(44599601-44599677)
chr7 (132-200)||(8643634-8643702)
chr7 (137-201)||(44600002-44600066)
chr7 (136-209)||(46816170-46816243)
chr7 (134-209)||(46815288-46815364)
[»] scaffold0328 (2 HSPs)
scaffold0328 (125-201)||(6661-6737)
scaffold0328 (126-201)||(6264-6339)
[»] chr6 (2 HSPs)
chr6 (125-201)||(33829502-33829578)
chr6 (137-201)||(33829113-33829177)
[»] chr4 (13 HSPs)
chr4 (125-201)||(36096341-36096417)
chr4 (125-201)||(45830064-45830140)
chr4 (125-201)||(50679290-50679366)
chr4 (134-201)||(45829114-45829181)
chr4 (125-201)||(36095928-36096004)
chr4 (125-195)||(56505805-56505875)
chr4 (132-201)||(43050726-43050795)
chr4 (137-201)||(50678902-50678966)
chr4 (125-200)||(43051119-43051194)
chr4 (132-201)||(47219071-47219140)
chr4 (138-201)||(11530086-11530149)
chr4 (134-186)||(11529289-11529341)
chr4 (125-165)||(56506476-56506516)
[»] chr2 (11 HSPs)
chr2 (125-201)||(18296588-18296664)
chr2 (125-201)||(2639348-2639424)
chr2 (136-201)||(2638944-2639009)
chr2 (136-201)||(7591716-7591781)
chr2 (136-201)||(26841710-26841775)
chr2 (137-201)||(18296199-18296263)
chr2 (125-201)||(26842104-26842180)
chr2 (126-201)||(7591313-7591388)
chr2 (142-209)||(31641602-31641669)
chr2 (136-200)||(29230440-29230504)
chr2 (136-200)||(29343739-29343803)
[»] chr1 (6 HSPs)
chr1 (125-201)||(48191251-48191327)
chr1 (125-201)||(49284921-49284997)
chr1 (125-201)||(6002759-6002835)
chr1 (137-201)||(49284532-49284596)
chr1 (136-201)||(6002360-6002425)
chr1 (136-201)||(48190865-48190930)
[»] chr8 (8 HSPs)
chr8 (132-201)||(9822867-9822936)
chr8 (136-201)||(9823227-9823292)
chr8 (125-201)||(13026747-13026823)
chr8 (125-200)||(39723514-39723589)
chr8 (132-201)||(22851509-22851578)
chr8 (132-201)||(39723914-39723983)
chr8 (137-201)||(13027148-13027212)
chr8 (126-166)||(22851887-22851927)


Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 31570612 - 31570416
Alignment:
Q  13 ggcaaccaacaactaaacagtcacaatagaactaaataactacaagataaagagagtaaagagtattggtacaacaatgatctacatcttgggatgagaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31570612 ggcaaccaacaactaaacagtcacaatagaactaaataactacaagataaagagagtaaagagtattggtacaacaatgatctacatcttgggatgagaa 31570513  T
Q  113 catatctccaatccccccgtgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatgatagtttt 209  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31570512 catatctccaatccctccgtgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatgatagtttt 31570416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 249 - 386
Target Start/End: Complemental strand, 31570376 - 31570239
Alignment:
Q  249 ctttaatcttcttcattgtatattcgtgactgtacgacctcaaaaaatatttggaatcaattcctttggacttcatctctactatttttcttctttaatc 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31570376 ctttaatcttcttcattgtatattcgtgactgtacgacctcaaaaaatatttggaatcaattcctttggacttcatctctactatttttcttctttaatc 31570277  T
Q  349 atgatcctctgaactggctcaagctttagttcatttct 386  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31570276 atgatcctctgaactggctcaagctttagttcatttct 31570239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 18817553 - 18817477
Alignment:
Q  125 ccccccgtgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||| |||||||||| |||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||    
T  18817553 ccccccatgtgttttagcgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatg 18817477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 11351370 - 11351295
Alignment:
Q  126 cccccgtgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    ||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||    
T  11351370 cccccatgtgttttagtaatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatg 11351295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 18817075 - 18817140
Alignment:
Q  136 ttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||    
T  18817075 ttttagtgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatg 18817140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 249 - 386
Target Start/End: Complemental strand, 1928247 - 1928108
Alignment:
Q  249 ctttaatcttcttcattgtatattcgtgactgtacgacctcaaaaaatatttggaatcaattcctttggacttcatctctac---tatttttcttcttta 345  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||   | ||||| |||||||    
T  1928247 ctttattcttcttcattgtatattcgtgactgtacgacctcaaaaaatatttggaattaattcc-ttggacttcatctctactgtttttttttttcttta 1928149  T
Q  346 atcatgatcctctgaactggctcaagctttagttcatttct 386  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1928148 atcatgatcctctgaactggctcaagctttagttcatttct 1928108  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 1928367 - 1928292
Alignment:
Q  134 tgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatgatagtttt 209  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||    
T  1928367 tgttttagtgatgatgtgtctgattttgatgatgtgtcttcatttaatttttgacatgtgtgtaaatgataatttt 1928292  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 28702396 - 28702461
Alignment:
Q  136 ttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||  ||| ||||||| ||||||    
T  28702396 ttttggtgatgatgtgtctgattttaatgacatgtcttcatttaatgcttgccatgtgtctaaatg 28702461  T

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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 13863893 - 13863824
Alignment:
Q  132 tgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||    
T  13863893 tgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatgtttgccacgtgtgtaaatg 13863824  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 13863425 - 13863501
Alignment:
Q  125 ccccccgtgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||    
T  13863425 ccccccatgtgttttagtgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatg 13863501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 44599601 - 44599677
Alignment:
Q  125 ccccccgtgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||    
T  44599601 ccccccatgtgttttagtgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatg 44599677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 8643702 - 8643634
Alignment:
Q  132 tgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaat 200  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||    
T  8643702 tgtgttttagcgatgatgtgtttgattttgatgacatgtcttcatttaatttttgccacgtgtgtaaat 8643634  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 44600066 - 44600002
Alignment:
Q  137 tttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||    
T  44600066 tttagtgatgatgtgtctgattttgatgacgtgtcttcatttaatatttgccacgtgtgtaaatg 44600002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 46816243 - 46816170
Alignment:
Q  136 ttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatgatagtttt 209  Q
    ||||| ||||||||||||| |||||||| |  |||||| |||||||||||| ||  ||||||||||||| ||||    
T  46816243 ttttaatgatgatgtgtctaattttgattatgtgtctttatttaatttttgccaattgtgtaaatgatattttt 46816170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 46815288 - 46815364
Alignment:
Q  134 tgttttagtgatgatgtgtctgattttgatgacatgtcttcat-ttaatttttgacatgtgtgtaaatgatagtttt 209  Q
    ||||||||||||||||||||| ||||||||||  | |||||||   || ||||| ||||||||||||||||| ||||    
T  46815288 tgttttagtgatgatgtgtcttattttgatgatgtatcttcatcaaaaattttgccatgtgtgtaaatgatattttt 46815364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 6737 - 6661
Alignment:
Q  125 ccccccgtgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||    
T  6737 ccccccatgtgttttagtgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatg 6661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 6264 - 6339
Alignment:
Q  126 cccccgtgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||  ||||||||||    
T  6264 cccccatgtgttttagtgatgatgtgtctgattttgatgacttgtcttcatttaatgtttgccacatgtgtaaatg 6339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 33829578 - 33829502
Alignment:
Q  125 ccccccgtgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||    
T  33829578 ccccccatgtgttttagtgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatg 33829502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 33829113 - 33829177
Alignment:
Q  137 tttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||    
T  33829113 tttagtgatgatgtgtctgattttgatgacgtgtcttcatttaatatttgccacgtgtgtaaatg 33829177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 36096417 - 36096341
Alignment:
Q  125 ccccccgtgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||    
T  36096417 ccccccatgtgttttagtgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatg 36096341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 45830140 - 45830064
Alignment:
Q  125 ccccccgtgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||    
T  45830140 ccccccatatgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatgtttgccacgtgtgtaaatg 45830064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 50679366 - 50679290
Alignment:
Q  125 ccccccgtgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||    
T  50679366 ccccccatgtgttttagtgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatg 50679290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 45829114 - 45829181
Alignment:
Q  134 tgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||    
T  45829114 tgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatgtttgccacgtgtgtaaatg 45829181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 36095928 - 36096004
Alignment:
Q  125 ccccccgtgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||    
T  36095928 ccccccatgtattttagtgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatg 36096004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 56505805 - 56505875
Alignment:
Q  125 ccccccgtgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtg 195  Q
    |||||| |||||||||||||||||||||||||| |||||||  || |||||||||||||||||||||||||    
T  56505805 ccccccatgtgttttagtgatgatgtgtctgatattgatgatgtgccttcatttaatttttgacatgtgtg 56505875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 43050726 - 43050795
Alignment:
Q  132 tgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||| |||| || |||||||||||    
T  43050726 tgtgttttagtgatgatgtgtttgattttgatgacgtgtcttcatttaatgtttgtcacgtgtgtaaatg 43050795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 50678902 - 50678966
Alignment:
Q  137 tttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||    
T  50678902 tttagtgatgatgtgtctgattttgatgacgtgtcttcatttaatatttgccacgtgtgtaaatg 50678966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 43051194 - 43051119
Alignment:
Q  125 ccccccgtgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaat 200  Q
    |||||| |||||||||||||||||||||||| |||||||||| |||||||||||||| |||  ||| |||||||||    
T  43051194 ccccccatgtgttttagtgatgatgtgtctgtttttgatgacgtgtcttcatttaatgtttaccatatgtgtaaat 43051119  T

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Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 47219140 - 47219071
Alignment:
Q  132 tgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    ||||||||||||||||||||| ||||||||||||| |||| ||||||||| |||| || |||||||||||    
T  47219140 tgtgttttagtgatgatgtgtttgattttgatgacgtgtcctcatttaatgtttgccacgtgtgtaaatg 47219071  T

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Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 11530149 - 11530086
Alignment:
Q  138 ttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||||| |||||||||||||||||   ||||||||||||| | |||||||||||||||||||    
T  11530149 ttagtgataatgtgtctgattttgattcgatgtcttcatttattgtttgacatgtgtgtaaatg 11530086  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 11529289 - 11529341
Alignment:
Q  134 tgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttg 186  Q
    |||||||||||||||||||||||||||||| |  |||||||||||||| ||||    
T  11529289 tgttttagtgatgatgtgtctgattttgattaggtgtcttcatttaatgtttg 11529341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 56506516 - 56506476
Alignment:
Q  125 ccccccgtgtgttttagtgatgatgtgtctgattttgatga 165  Q
    |||| ||||||||||||||||||||||||| ||||||||||    
T  56506516 cccctcgtgtgttttagtgatgatgtgtctaattttgatga 56506476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 18296664 - 18296588
Alignment:
Q  125 ccccccgtgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||    
T  18296664 ccccccatgtgttttagtgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatg 18296588  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 2639424 - 2639348
Alignment:
Q  125 ccccccgtgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||| |||||||||| |||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||    
T  2639424 ccccccatgtgttttagcgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatg 2639348  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 2638944 - 2639009
Alignment:
Q  136 ttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||    
T  2638944 ttttagtgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatg 2639009  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 7591781 - 7591716
Alignment:
Q  136 ttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||    
T  7591781 ttttagtgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatg 7591716  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 26841710 - 26841775
Alignment:
Q  136 ttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||    
T  26841710 ttttagtgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatg 26841775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 18296199 - 18296263
Alignment:
Q  137 tttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||    
T  18296199 tttagtgatgatgtgtctgattttgatgacgtgtcttcatttaatatttgccacgtgtgtaaatg 18296263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 26842180 - 26842104
Alignment:
Q  125 ccccccgtgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||| |||  || |||||||||||    
T  26842180 ccccccatgtgttttagtgatgatgtgtatgattttgatgacgtgtcttcatttaatgttttccacgtgtgtaaatg 26842104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 7591313 - 7591388
Alignment:
Q  126 cccccgtgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    ||||| |||||||||| |||||||||||||||||||||| | |||||||||||||| |||| ||  ||||||||||    
T  7591313 cccccatgtgttttagcgatgatgtgtctgattttgatggcgtgtcttcatttaatgtttgccacatgtgtaaatg 7591388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 31641602 - 31641669
Alignment:
Q  142 tgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatgatagtttt 209  Q
    ||||||| ||| ||||||||||||| ||| ||||||||||||||| ||| ||||||||||||| ||||    
T  31641602 tgatgatctgtttgattttgatgacgtgtattcatttaatttttgtcatatgtgtaaatgataatttt 31641669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 29230504 - 29230440
Alignment:
Q  136 ttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaat 200  Q
    ||||||||||||  ||||||||||||||||  |||||||||||||| |||| | |||||||||||    
T  29230504 ttttagtgatgacatgtctgattttgatgatgtgtcttcatttaatgtttgtcgtgtgtgtaaat 29230440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 29343803 - 29343739
Alignment:
Q  136 ttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaat 200  Q
    ||||||||||||  ||||||||||||||||  |||||||||||||| |||| | |||||||||||    
T  29343803 ttttagtgatgacatgtctgattttgatgatgtgtcttcatttaatgtttgtcgtgtgtgtaaat 29343739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 48191327 - 48191251
Alignment:
Q  125 ccccccgtgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||    
T  48191327 ccccccatgtgttttagtgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatg 48191251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 49284997 - 49284921
Alignment:
Q  125 ccccccgtgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||    
T  49284997 ccccccatgtgttttagtgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatg 49284921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 6002835 - 6002759
Alignment:
Q  125 ccccccgtgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||| ||||||||||||||||||||||||||||||||||  |||||||||||||| |||| || |||||||||||    
T  6002835 ccccccatgtgttttagtgatgatgtgtctgattttgatgatgtgtcttcatttaatgtttgccacgtgtgtaaatg 6002759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 49284532 - 49284596
Alignment:
Q  137 tttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||    
T  49284532 tttagtgatgatgtgtctgattttgatgacgtgtcttcatttaatatttgccacgtgtgtaaatg 49284596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 6002360 - 6002425
Alignment:
Q  136 ttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||| |||| || |||||||||||    
T  6002360 ttttagtgatgatgtgtctgattttgatgacgtgttttcatttaatgtttgccacgtgtgtaaatg 6002425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 48190865 - 48190930
Alignment:
Q  136 ttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||| |||| ||  ||||||||||    
T  48190865 ttttagtgatgatgtgtctgattttgacgacgtgtcttaatttaatgtttgccacttgtgtaaatg 48190930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 9822867 - 9822936
Alignment:
Q  132 tgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||| |||| ||||||||||||||    
T  9822867 tgtgttttagtgatcatgtgtctgattttgatgacgtgtcttcatttaatgtttgccatgtgtgtaaatg 9822936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 9823292 - 9823227
Alignment:
Q  136 ttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||    
T  9823292 ttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatgtttgccacgtgtgtaaatg 9823227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 13026747 - 13026823
Alignment:
Q  125 ccccccgtgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || |||| ||||||    
T  13026747 ccccccatgtgttttagtgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtctaaatg 13026823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 39723514 - 39723589
Alignment:
Q  125 ccccccgtgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaat 200  Q
    |||||| |||||||||||||||||||||||| |||||||||| |||||||||||||| |||| ||| |||||||||    
T  39723514 ccccccatgtgttttagtgatgatgtgtctgtttttgatgacgtgtcttcatttaatgtttgccatatgtgtaaat 39723589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 22851509 - 22851578
Alignment:
Q  132 tgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| || |||||||||||    
T  22851509 tgtgttttagtgatgatgtgtctgattttgatgacgtgtgttcatttaatgtttgccacgtgtgtaaatg 22851578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 39723983 - 39723914
Alignment:
Q  132 tgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||| |||| || |||||||||||    
T  39723983 tgtgttttagtgatgatgtgtttgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatg 39723914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 13027212 - 13027148
Alignment:
Q  137 tttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 201  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||    
T  13027212 tttagtgatgatgtgtctgattttgatgacgtgtcttcatttaatatttgccacgtgtgtaaatg 13027148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 22851927 - 22851887
Alignment:
Q  126 cccccgtgtgttttagtgatgatgtgtctgattttgatgac 166  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  22851927 cccccatgtgttttagtgatgatgtgtctgattttgatgac 22851887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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