View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6082_high_18 (Length: 368)
Name: NF6082_high_18
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6082_high_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 10 - 368
Target Start/End: Original strand, 32725430 - 32725788
Alignment:
| Q |
10 |
catcatcaaaaagccctaacaacagcttcgcttgacaatgatttgcaaagctcaccggaactcccctaaaccctacctcacctaaccactccccccatga |
109 |
Q |
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| T |
32725430 |
catcattaaaaagccctaacaacagctttgcttgacaatgatttgcaaagctcaccggaactcccctaaaccctacctcacctaaccactccccccatga |
32725529 |
T |
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| Q |
110 |
ccttctctcctcttcaccacccgttctatatatccggcccaacgagcctgcaattctaggcccaaaaaataccctctccaccaaagtccgggcccggttc |
209 |
Q |
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| T |
32725530 |
ccttctctcctcttcaccacccgttctatatatccggcccaacgagcctgcaattctaggcccaaaaaataccctctccaccaaagtccgggcccggttc |
32725629 |
T |
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| Q |
210 |
tgcatcggaaaaccagcctccgatgaatcaaaaaccgctgaataatgatgaagtgagtccatgaacctttccacaaacccaccaacaacagaaccaactt |
309 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32725630 |
tgcatcggaaaaccagcctccaatgaatcaaaaaccgctgaataatgatgaagtgagtccatgaacctttccacaaacccaccaataacagaaccaactt |
32725729 |
T |
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| Q |
310 |
cttcttcaaccaacgacacaagctttggattcaacgtttctgctccgtttaaaaacgaa |
368 |
Q |
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||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32725730 |
cttcttcaaccaacgtcacaagctttggattcaacgtttttgctccgtttaaaaacgaa |
32725788 |
T |
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