View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6082_high_22 (Length: 323)
Name: NF6082_high_22
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6082_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 7761371 - 7761081
Alignment:
| Q |
17 |
atggtctcatcacgatgttctcggtgtactgaaaggaaacttagtgagaattatatcatttttactttgttaatatacctt-cnnnnnnnnaactttggc |
115 |
Q |
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| T |
7761371 |
atggtctcatcacgatgttctcggtgtactgaaaggaaacttagtgagaattatatcatttttactttgttaatatacctttcttttttttaactttggc |
7761272 |
T |
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| Q |
116 |
aaatatattttagtctcaaactatctacatttttcatgtattatgtatagggaagtaccacagttgaaggaataatgcttcatcccccaaaacaagagaa |
215 |
Q |
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| T |
7761271 |
aaatatattttagtctcaaactatctacatttttcatgtattatgtatagggaagtaccacagttgaaggaataatgcttcatcccccaaaacaagagaa |
7761172 |
T |
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| Q |
216 |
agtagatcattgggcttataatgcctttcaaaagatgaaaaacctcagaattttgattgtaaggaatacattgttttcatttggacctagt |
306 |
Q |
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| T |
7761171 |
agtagatcattgggcctataatgcctttcaaaagatgaaaaacctcagaattttgattgtaaggaatacattgttttcatttggacctagt |
7761081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 144 - 305
Target Start/End: Complemental strand, 7754125 - 7753963
Alignment:
| Q |
144 |
atttttcatgtattatgtatagggaagtaccacagttgaaggaataatgcttcatcccccaaaacaagagaaagtagatcattgggcttataatgccttt |
243 |
Q |
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| T |
7754125 |
atttttcatgtattttctttagggaagtactaaagtagaaggaatgatgcttcatcccccaaaacaagaaaaagtagattattgggcttattctgccttt |
7754026 |
T |
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| Q |
244 |
caaaagat-gaaaaacctcagaattttgattgtaaggaatacattgttttcatttggacctag |
305 |
Q |
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| T |
7754025 |
aagaagatagaaaaacctcagaattttgattgtaaggaatacattattttcatcaggacctag |
7753963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 107 - 306
Target Start/End: Complemental strand, 7837706 - 7837510
Alignment:
| Q |
107 |
aactttggcaaatatattttagtctcaaactatctacatttttcatgtattatgtatagggaagtaccacagttgaaggaataatgcttcatcccccaaa |
206 |
Q |
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| T |
7837706 |
aactttggcaaatat-ttttagtctcaat-tctctccatttttcatgtatt-tcaatagggaagtactgcagttgaaggcataatgcttcatcccccaaa |
7837610 |
T |
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| Q |
207 |
acaagagaaagtagatcattgggcttataatgcctttcaaaagatgaaaaacctcagaattttgattgtaaggaatacattgttttcatttggacctagt |
306 |
Q |
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| T |
7837609 |
acaagaaaaagtagatcattgggacgatgctgcctttaagaagatgaaaaatctcagaattttgattgttaggaatacagtattttcatcaggacctagt |
7837510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 7754271 - 7754192
Alignment:
| Q |
18 |
tggtctcatcacgatgttctcggtgtactgaaaggaaacttagtgagaattatatcatttttactttgttaatatacctt |
97 |
Q |
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| T |
7754271 |
tggtctcataaagatgttcttgatgtactgaaaggaaatttggtaagaattatatcatctttactttcttaatagacctt |
7754192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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