View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6082_high_28 (Length: 264)
Name: NF6082_high_28
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6082_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 6454120 - 6454254
Alignment:
| Q |
1 |
tctctggaaaaattaattcatctctgtgttatattnnnnnnntgcaattctttaaatcaaccctagttggatcctactaaaagggtacctcgaaaacaat |
100 |
Q |
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| T |
6454120 |
tctctggaaaaattaattcatctctgtgttatattaaaaaaatgcaattctttaaatcaaccctagttggatcctactaaaagggtacctcgaaaacaat |
6454219 |
T |
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| Q |
101 |
gcaaatcatgactcactcatgatcatataatcact |
135 |
Q |
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| T |
6454220 |
gcaaatcatgactcactcatgatcatataatcact |
6454254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 195 - 257
Target Start/End: Original strand, 6454314 - 6454376
Alignment:
| Q |
195 |
agtactctatactataccctaattaaatcacatcctaaaatgcatactttattttcacctttg |
257 |
Q |
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| T |
6454314 |
agtactctatactataccctaattaaatcacatcctaaaatgcatactttattttcacctttg |
6454376 |
T |
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