View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6082_high_3 (Length: 680)

Name: NF6082_high_3
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6082_high_3
NF6082_high_3
[»] chr5 (1 HSPs)
chr5 (13-662)||(43546577-43547226)


Alignment Details
Target: chr5 (Bit Score: 646; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 13 - 662
Target Start/End: Original strand, 43546577 - 43547226
Alignment:
Q  13 agcaaagggtaatcgatacctgttagagcggtaagtagtgtcaaaagtgacagtatctccgaaaaaagtgtaattcaaccttgccttggggtcagcccag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43546577 agcaaagggtaatcgatacctgttagagcggtaagtagtgtcaaaagtgacagtatctccgaaaaaagtgtaattcaaccttgccttggggtcagcccag 43546676  T
Q  113 aaaacattggtgatgggatgatcctcgtcatcaagatcaccttgaacagcaaagaagaaattaggattttgggcatgcatttgtctcaaataatcaagaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43546677 aaaacattggtgatgggatgatcctcgtcatcaagatcaccttgaacagcaaagaagaaattaggattttgggcatgcatttgtctcaaataatcaagaa 43546776  T
Q  213 caagttgaatgtcgccttgtaaacttttatggcgattattcctcatgtaattcctacaatcaacctcagtaaagccaactttgctgataccaccatactc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43546777 caagttgaatgtcgccttgtaaacttttatggcgattattcctcatgtaattcctacaatcaacctcagtaaagccaactttgctgataccaccatactc 43546876  T
Q  313 tttgatgagtgcagacataattcggcgaggacccataccagcagcctgtagagtgtcaattagggtttttgcagaaccagaaatttgcctgtgggaacga 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43546877 tttgatgagtgcagacataattcggcgaggacccataccagcagcctgtagagtgtcaattagggtttttgcagaaccagaaatttgcctgtgggaacga 43546976  T
Q  413 aggcagtgaacctgatcgggtggaacaagttcgtgattgtgttctctgacgaagccggatacgatccacttggcagaagaatcgtgcattttgacagata 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43546977 aggcagtgaacctgatcgggtggaacaagttcgtgattgtgttctctgacgaagccggatacgatccacttggcagaagaatcgtgcattttgacagata 43547076  T
Q  513 aagaggctttgcatccaaccctagtgactgttcgtgggcgtttgatctctctgtctttggtacgtttctcgttcaaattgcgaaacccttctttagcaca 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43547077 aagaggctttgcatccaaccctagtgactgttcgtgggcgtttgatctctctgtctttggtacgtttctcgttcaaattgcgaaacccttctttagcaca 43547176  T
Q  613 aacgaattgtctctgaatgatagctccgtcgcggcgagaacgacgagaag 662  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43547177 aacaaattgtctctgaatgatagctccgtcgcggcgagaacgacgagaag 43547226  T

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