View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6082_high_30 (Length: 251)

Name: NF6082_high_30
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6082_high_30
NF6082_high_30
[»] chr4 (8 HSPs)
chr4 (13-247)||(5197192-5197426)
chr4 (13-247)||(5215337-5215571)
chr4 (13-215)||(5183825-5184027)
chr4 (13-251)||(5161506-5161744)
chr4 (13-247)||(5174451-5174685)
chr4 (13-214)||(4855343-4855544)
chr4 (13-247)||(4840837-4841071)
chr4 (125-215)||(7143688-7143777)
[»] chr8 (1 HSPs)
chr8 (128-166)||(32745008-32745046)
[»] chr2 (1 HSPs)
chr2 (128-166)||(4912000-4912038)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 5197426 - 5197192
Alignment:
Q  13 aaaatgttatcatgtccacaacagtttccttttcctcattgtcatttgattgtgatgaaggcaaagactcatcacgttcacacttttgattaaggagtgg 112  Q
    |||||||||||||||||||| ||||||||| ||| ||||||||||| ||||| ||||| ||   || |||  |||||||||||||| || | ||||||||    
T  5197426 aaaatgttatcatgtccacaccagtttcctcttcttcattgtcattggattgggatgatggtggaggctcgacacgttcacactttcgactgaggagtgg 5197327  T
Q  113 tccacaaagactgggattacctctgtagttgtcctcatcaaagtttgcaaactgtcctatactaggtggtgttccagaaaggttgttgtatgacacattg 212  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5197326 tccacaaagactgggattacctctgtagttatcctcatcaaagtttgcaaactggcctatactaggtggtgttccagaaaggttgttgtatgacacattg 5197227  T
Q  213 aaggttgacaaaaagttcagctgggttagttcatt 247  Q
    ||||||||||||||||| |||||||||||||||||    
T  5197226 aaggttgacaaaaagtttagctgggttagttcatt 5197192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 5215571 - 5215337
Alignment:
Q  13 aaaatgttatcatgtccacaacagtttccttttcctcattgtcatttgattgtgatgaaggcaaagactcatcacgttcacacttttgattaaggagtgg 112  Q
    ||||||||||||||||||| |  |||||||||||  |||||||||| ||||||||||||||  |||||||  ||||||||||||||||||  ||||||||    
T  5215571 aaaatgttatcatgtccaccatggtttccttttctccattgtcattggattgtgatgaaggtgaagactcgacacgttcacacttttgatagaggagtgg 5215472  T
Q  113 tccacaaagactgggattacctctgtagttgtcctcatcaaagtttgcaaactgtcctatactaggtggtgttccagaaaggttgttgtatgacacattg 212  Q
    ||||||||||| |||||||||||||||  |||||||||||||   | ||||||||||| ||||||||||||||||||||| |||||||||||| ||||||    
T  5215471 tccacaaagaccgggattacctctgtaactgtcctcatcaaaacctccaaactgtcctgtactaggtggtgttccagaaaagttgttgtatgatacattg 5215372  T
Q  213 aaggttgacaaaaagttcagctgggttagttcatt 247  Q
    |||||||| |||||||||| |||||||||||||||    
T  5215371 aaggttgataaaaagttcaactgggttagttcatt 5215337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 5184027 - 5183825
Alignment:
Q  13 aaaatgttatcatgtccacaacagtttccttttcctcattgtcatttgattgtgatgaaggcaaagactcatcacgttcacacttttgattaaggagtgg 112  Q
    ||||||||||||||||||| |  |||| ||||||  |||||||||| ||||||||||||||  |||||||  ||||||||||||||||||| |||||| |    
T  5184027 aaaatgttatcatgtccaccatggtttgcttttctccattgtcattggattgtgatgaaggtgaagactcgacacgttcacacttttgatttaggagttg 5183928  T
Q  113 tccacaaagactgggattacctctgtagttgtcctcatcaaagtttgcaaactgtcctatactaggtggtgttccagaaaggttgttgtatgacacattg 212  Q
    ||| ||||||| |||||||||||||||||||| |||||||||||||||||| |||| | | |||||||||||||||||||||||||||||||||||||||    
T  5183927 tccgcaaagaccgggattacctctgtagttgtactcatcaaagtttgcaaattgtcttgtgctaggtggtgttccagaaaggttgttgtatgacacattg 5183828  T
Q  213 aag 215  Q
    |||    
T  5183827 aag 5183825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 5161744 - 5161506
Alignment:
Q  13 aaaatgttatcatgtccacaacagtttccttttcctcattgtcatttgattgtgatgaaggcaaagactcatcacgttcacacttttgattaaggagtgg 112  Q
    ||||||||||||||||||||   ||||||| ||| ||||||||||| ||||||||||| ||  ||||||   ||| |||||||||| | |  |||||||     
T  5161744 aaaatgttatcatgtccacatttgtttcctcttcttcattgtcattggattgtgatgatggtgaagacttgacaccttcacactttcggtcgaggagtga 5161645  T
Q  113 tccacaaagactgggattacctctgtagttgtcctcatcaaagtttgcaaactgtcctatactaggtggtgttccagaaaggttgttgtatgacacattg 212  Q
    ||||||||||| |||||||||||||||| |||||||| | ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  5161644 tccacaaagaccgggattacctctgtagctgtcctcaacgaaggttgcaaactgtcctgtactaggtggtgttccagaaaggttgttgtatgacacgttg 5161545  T
Q  213 aaggttgacaaaaagttcagctgggttagttcattaggt 251  Q
    |||||||| |||||| ||| ||||||||| |||| ||||    
T  5161544 aaggttgataaaaaggtcaactgggttagctcataaggt 5161506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 5174685 - 5174451
Alignment:
Q  13 aaaatgttatcatgtccacaacagtttccttttcctcattgtcatttgattgtgatgaaggcaaagactcatcacgttcacacttttgattaaggagtgg 112  Q
    |||| |||||||||||||| |  |||||||||||  | | |||||| ||||||||||| |   |||||||  || ||||||||||| |||| | || |||    
T  5174685 aaaaagttatcatgtccaccatggtttccttttctccgtcgtcattggattgtgatgatgctgaagactcgacatgttcacactttcgattgacgaatgg 5174586  T
Q  113 tccacaaagactgggattacctctgtagttgtcctcatcaaagtttgcaaactgtcctatactaggtggtgttccagaaaggttgttgtatgacacattg 212  Q
    |||||||||||  ||||||||| ||||||| |||||| |||||  | |||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  5174585 tccacaaagaccaggattacctatgtagttttcctcaacaaagcctccaaattgtcctgtactaggtggtgttccagaaaggttgttgtatgacacattg 5174486  T
Q  213 aaggttgacaaaaagttcagctgggttagttcatt 247  Q
    ||||||||||||||||| |||||||||||||||||    
T  5174485 aaggttgacaaaaagtttagctgggttagttcatt 5174451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 4855343 - 4855544
Alignment:
Q  13 aaaatgttatcatgtccacaacagtttccttttcctcattgtcatttgattgtgatgaaggcaaagactcatcacgttcacacttttgattaaggagtgg 112  Q
    ||||||||||||||||||||   ||||||| ||| ||||||||||| ||||||||||| ||  ||||||   ||| |||||||||| | |  ||||||||    
T  4855343 aaaatgttatcatgtccacatttgtttcctcttcttcattgtcattggattgtgatgatggtgaagacttggcaccttcacactttcggtcgaggagtgg 4855442  T
Q  113 tccacaaagactgggattacctctgtagttgtcctcatcaaagtttgcaaactgtcctatactaggtggtgttccagaaaggttgttgtatgacacattg 212  Q
    ||||||||||  |||||||||||||||| ||||||||   ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4855443 tccacaaagatcgggattacctctgtagctgtcctcaatgaaggttgcaaactgtcctgtactaggtggtgttccagaaaggttgttgtatgacacattg 4855542  T
Q  213 aa 214  Q
    ||    
T  4855543 aa 4855544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 4840837 - 4841071
Alignment:
Q  13 aaaatgttatcatgtccacaacagtttccttttcctcattgtcatttgattgtgatgaaggcaaagactcatcacgttcacacttttgattaaggagtgg 112  Q
    |||| |||||||||||||| |  |||||||||||  | | |||||| ||||||||||| |   |||||||  || ||||||||||| |||| |||| |||    
T  4840837 aaaaagttatcatgtccaccatggtttccttttctccgtcgtcattggattgtgatgatgctgaagactcgacatgttcacactttcgattgaggaatgg 4840936  T
Q  113 tccacaaagactgggattacctctgtagttgtcctcatcaaagtttgcaaactgtcctatactaggtggtgttccagaaaggttgttgtatgacacattg 212  Q
    |||||||||||  ||||||||| ||||||| |||||| |||||  | |||| |||||| ||||||||||||||||||| |||||||||||||||||||||    
T  4840937 tccacaaagaccaggattacctatgtagttttcctcaacaaagcctccaaattgtcctgtactaggtggtgttccagagaggttgttgtatgacacattg 4841036  T
Q  213 aaggttgacaaaaagttcagctgggttagttcatt 247  Q
    ||| ||   |||||||||| |||||||||||||||    
T  4841037 aagatttctaaaaagttcaactgggttagttcatt 4841071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 7143777 - 7143688
Alignment:
Q  125 gggattacctctgtagttgtcctcatcaaagtttgcaaactgtcctatactaggtggtgttccagaaaggttgttgtatgacacattgaag 215  Q
    ||||||||||||||||||||||| | |||||  | | |  |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7143777 gggattacctctgtagttgtccttaacaaagcctccgat-tgtcctatactaggtggtgttccagaaaggttgttgtaagacacattgaag 7143688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 32745008 - 32745046
Alignment:
Q  128 attacctctgtagttgtcctcatcaaagtttgcaaactg 166  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  32745008 attacctctatagttgttctcatcaaagtttgcaaactg 32745046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 4912000 - 4912038
Alignment:
Q  128 attacctctgtagttgtcctcatcaaagtttgcaaactg 166  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  4912000 attacctctatagttgttctcatcaaagtttgcaaactg 4912038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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