View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6082_high_41 (Length: 243)
Name: NF6082_high_41
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6082_high_41 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 4550847 - 4550623
Alignment:
| Q |
1 |
tcattcggacatttcatcttctgctccactagattggaagttatcatggtgatctgcatccccatgttggtcgtcgagatcgtcatccatgtctaggttc |
100 |
Q |
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| T |
4550847 |
tcattcggacatttcatcttctgctccactagattggaagttatcatggtgatctgcatccccatgttggtcgtcgagatcgtcatccatgtctaggttc |
4550748 |
T |
|
| Q |
101 |
tttgatgaattgccctttaaccttgtataaaccttgaaaggaacacatgtatagggaattatttcgcgaattcaaataaaatggcaagcttaaagataaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4550747 |
tttgatgaattgccctttaaccttgtataaaccttgaaaggaacacatatatagggaattatttcgcgaattcaaataaaatggcaagcttaaagataaa |
4550648 |
T |
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| Q |
201 |
atggttgccatacctcagaatcctt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
4550647 |
atggttgccatacctcagaatcctt |
4550623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 2473699 - 2473775
Alignment:
| Q |
122 |
cttgtataaaccttgaaaggaacacatgtatagggaattatttcgcgaattcaaataaaatggcaagcttaaagata |
198 |
Q |
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|
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2473699 |
cttgtataaaccttgaaaggaacacgtgtatggggaattatttcgcgaattcaaataaaatggcaagcttaaagata |
2473775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 2469440 - 2469516
Alignment:
| Q |
122 |
cttgtataaaccttgaaaggaacacatgtatagggaattatttcgcgaattcaaataaaatggcaagcttaaagata |
198 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
2469440 |
cttgtataaaccttgaaaggaacacgtatatagggaattatttcgcaaattcaaataaaatggcaaccttaaagata |
2469516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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