View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6082_high_45 (Length: 238)
Name: NF6082_high_45
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6082_high_45 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 3989928 - 3989707
Alignment:
| Q |
1 |
cgtactaattttaaagaatgatgacgggttttaaggtactgtttgaaggaaaatacacaagacatgctcacatcacctaattaagtctagttttaaggtg |
100 |
Q |
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| T |
3989928 |
cgtactaattttaaagaatgatgacgggttttaaggtactgtttgaaggaaaatacacaagacatgctcacatcacctaattaagtctagttttaaggcg |
3989829 |
T |
|
| Q |
101 |
tgttgttatcagatctttaaagcgacaacctcatctggnnnnnnnnttgttctgtatcctctgtactatatttacttatcacgcataagcacatacgcac |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3989828 |
tgttgttatcagatctttaaagcgacaacctcatct-gaaaaaaatttgttctgtatcgtctgtactatatttacttatcacgcataagcacatacgcac |
3989730 |
T |
|
| Q |
201 |
ttccgttttcttaccaaaagaat |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
3989729 |
ttccgttttcttaccaaaagaat |
3989707 |
T |
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