View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6082_high_46 (Length: 238)
Name: NF6082_high_46
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6082_high_46 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 27536766 - 27536979
Alignment:
| Q |
5 |
tgttacaaagagagaaaactgaagctaataatagaaggttgttacagggctatagagcaaaagacagataaggctaaaacatatttacaacttacgaatc |
104 |
Q |
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| T |
27536766 |
tgttacagagagagaaaactgaagctaataatagaaggttgttacagggctatagagcaaaagacagataaggctaaaacatatttacaacttacgaatc |
27536865 |
T |
|
| Q |
105 |
caaaattattaacataaagatagaatagcagtaactatattgtgagaactacaataaaaagcagtgataatatatagcaaaatccatctgcaaaactatg |
204 |
Q |
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| T |
27536866 |
caaaattattaacataaagatagaatagcagtaactatattgtgagaactacaataaaaagccgtgata----atagcaaaatccatctgcaaaactatg |
27536961 |
T |
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| Q |
205 |
gacttaatttgaagtggg |
222 |
Q |
| |
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|||||||||||||||||| |
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| T |
27536962 |
gacttaatttgaagtggg |
27536979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 15643303 - 15643506
Alignment:
| Q |
13 |
agagagaaaactgaagctaataatagaaggttgttacagggctatagagcaaaagacagataaggctaaaacatatttacaacttacgaatccaaaatta |
112 |
Q |
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||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15643303 |
agagagaaaactgaagctaataatagaagattgttatagg-ctatagagcaaaagacagataaggctaaaacatatttacaacttacgaatccaaaatta |
15643401 |
T |
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| Q |
113 |
ttaacataaagatagaatagcagtaactatattgtgagaactacaataaaaagcagtgataatatatagcaaaatccatctgcaaaactatggacttaat |
212 |
Q |
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|| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15643402 |
ttgacataaa-atagaatcgcagtaactatattgtgagaactacaataaaaagcagtgata----atagcaaaatccatctgcaaaactatggacttaat |
15643496 |
T |
|
| Q |
213 |
ttgaagtggg |
222 |
Q |
| |
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|||||||||| |
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| T |
15643497 |
ttgaagtggg |
15643506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 15654604 - 15654811
Alignment:
| Q |
8 |
tacaaagagagaaaactgaagctaataatagaaggttgttacagggctatagagcaaaagacagataaggctaaaacatatttacaacttacgaatccaa |
107 |
Q |
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|||| ||||| |||||||||||||| ||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15654604 |
tacagagagacaaaactgaagctaaaaatagaaggttgttacatggttatagacgaaaagacagataaggctaaaacatatttacaacttaagaatccaa |
15654703 |
T |
|
| Q |
108 |
aattattaacataaagatagaatagcagtaactatattgtgagaactacaataaaaagcagtgataatatatagcaaaatccatctgcaaaactatggac |
207 |
Q |
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| T |
15654704 |
aattattaacataaa-atagaatagcagtaactatattgtgagaactacaataaaaaacagtgata----atagcaaaatccatctacaaaactatggac |
15654798 |
T |
|
| Q |
208 |
ttaatttgaagtg |
220 |
Q |
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||||||||||||| |
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| T |
15654799 |
ttaatttgaagtg |
15654811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 44 - 222
Target Start/End: Original strand, 4303339 - 4303513
Alignment:
| Q |
44 |
tgttacagggctatagagcaaaagacagataaggctaaaacatatttacaacttacgaatccaaaattattaacataaagatagaatagcagtaactata |
143 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| |||||| |
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| T |
4303339 |
tgttacagggctatagaggaaaagacagataaggctaaaacagatttacaacttacgaatccaaaattactaacagaaagatagaatagcagcaactatg |
4303438 |
T |
|
| Q |
144 |
ttgtgagaactacaataaaaagcagtgataatatatagcaaaatccatctgcaaaactatggacttaatttgaagtggg |
222 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| ||||||| |||||||||||| |
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| T |
4303439 |
ttgtgagaactccaataaaaagcagtgataataa----caaaatccagctgcaaaacggtggacttcatttgaagtggg |
4303513 |
T |
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