View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6082_high_5 (Length: 674)
Name: NF6082_high_5
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6082_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 538; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 666
Target Start/End: Original strand, 25985506 - 25986170
Alignment:
| Q |
1 |
accacttcaaattttctgattctcccagattcagcttctccatctcatttgttatttacttcttcaaaccttcatttgcttgttctttgttaagtttctt |
100 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| || |
|
|
| T |
25985506 |
accactccaaattttctaattctcccagattcagcttctccatctcatttgttatttacttcttcaaaccctcatttgcttcttctttgttaagtttgtt |
25985605 |
T |
|
| Q |
101 |
tgcatatttgaagagaaaaatggtaaaatttcaaaaaattgtgataaggtctttctatgtttctaatttctcctgtgatagtgttacgaatagaccatag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25985606 |
tgcatatttgaagagaaaaatggtaaaatttcaaaaaattgtgataaggtcttcctatgtttctaatttctcctatgatagtgttacgaatagaccatag |
25985705 |
T |
|
| Q |
201 |
ttttaagagcgttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccctgttagtacttttcggattttaaaatccaga |
300 |
Q |
| |
|
||||||||| |||| ||||| |||||||||||||||||||||| |||| |||||||| ||||||||| |||||||||||| |||||||||||||||| | |
|
|
| T |
25985706 |
ttttaagagtgttatttttcccatcctactgtcttctcacgcgtcctgcaaaaattttaaaaatacct-tgttagtactttccggattttaaaatccaaa |
25985804 |
T |
|
| Q |
301 |
caaaatcaatatgacaagggcctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatatccctgttt |
400 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
25985805 |
caaaatcgatatgacaagggcctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatacccctgttt |
25985904 |
T |
|
| Q |
401 |
gtcattctctaacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaataatttgat |
500 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| |
|
|
| T |
25985905 |
gtcattctctaacaaaggctttgtaagatcttccaaactgttgctactctttagtgttgctgtaccataggaacttactggtggtactaaagaatctgat |
25986004 |
T |
|
| Q |
501 |
ggtttactagttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgagctggaccataacttgaggtgcttgcactagcttccgacacag |
600 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25986005 |
ggtttactagttggtgcttgagtagattcaacactcttaggtttatgttgtttgttagctggatcataatttgaggtgcttgcactagcttccgacacag |
25986104 |
T |
|
| Q |
601 |
cttttgctccactagaagattgattattgatattaatcgaagtggaagtttcattcctatattctt |
666 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
25986105 |
cttttgctccactagaagattgattattgatattaatcgaagtggaagtctcattcctattttctt |
25986170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 205 - 666
Target Start/End: Complemental strand, 18239407 - 18238946
Alignment:
| Q |
205 |
aagagcgttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccctgttagtacttttcggattttaaaatccagacaaa |
304 |
Q |
| |
|
||||| |||||||||| || ||||||||||||| || | ||||| ||||||| ||||||||||||||||||| |||| ||||||||||||||| || ||| |
|
|
| T |
18239407 |
aagagtgttacttttcccaccctactgtcttctaacacaccctgcaaaaattccaaaaatacccctgttagtgctttccggattttaaaatccggataaa |
18239308 |
T |
|
| Q |
305 |
atcaatatgacaagggcctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatatccctgtttgtca |
404 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
18239307 |
atcgatatgacaagggtctgctcttttcttcaatatgacgctttttctcttccaatttctcccccatcttcttccccaaatcaaatacccctgtttgtca |
18239208 |
T |
|
| Q |
405 |
ttctctaacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaataatttgatggtt |
504 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
18239207 |
ttctctaacaaaggctttgtaagatcttccaaactgttgctactctttagtgttgttgtaccagaggaacttactggtggtactaaagaatctgatggtt |
18239108 |
T |
|
| Q |
505 |
tactagttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgagctggaccataacttgaggtgcttgcactagcttccgacacagcttt |
604 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
18239107 |
tactagttggtgcttgagtagattctacactcttaggtttttgttgtttgttagctggaccataacttgaggtgcttgcactagcatccgacctagcttt |
18239008 |
T |
|
| Q |
605 |
tgctccactagaagattgattattgatattaatcgaagtggaagtttcattcctatattctt |
666 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
18239007 |
tgctccactagaagattgattattggtattaatcgaagtggaagtctcattcctattttctt |
18238946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 397 - 666
Target Start/End: Complemental strand, 34575923 - 34575654
Alignment:
| Q |
397 |
gtttgtcattctctaacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaataatt |
496 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||| ||| |||||||||| |||||||| |||||||| ||| |
|
|
| T |
34575923 |
gtttgtcattctctaacaaaggctttgtaagatcttccaaactgttgctgctctttagtgttcctgcaccagaggaatttactggtagtactaaagaatc |
34575824 |
T |
|
| Q |
497 |
tgatggtttactagttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgagctggaccataacttgaggtgcttgcactagcttccgac |
596 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34575823 |
tgatgatttactagttggtgcttgagtagattcaacactcttaggtttttgttgtttgttagctggaccataacttgaggtgcttgcactagcttccgac |
34575724 |
T |
|
| Q |
597 |
acagcttttgctccactagaagattgattattgatattaatcgaagtggaagtttcattcctatattctt |
666 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
34575723 |
ctagcttttgctccactagaagattgattattggtgttaatcgaagtggaagtctcattcctattttctt |
34575654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 320 - 394
Target Start/End: Complemental strand, 34576184 - 34576110
Alignment:
| Q |
320 |
gcctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatatcc |
394 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34576184 |
gcctgctcttttcttcaagatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaacatcc |
34576110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 45046310 - 45046362
Alignment:
| Q |
212 |
ttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaat |
264 |
Q |
| |
|
||||||||| || ||||| |||||||| |||||||||||||| || ||||||| |
|
|
| T |
45046310 |
ttacttttcccaccctacggtcttctcccgcgccctgtaaaatttccaaaaat |
45046362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 45567350 - 45567402
Alignment:
| Q |
212 |
ttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaat |
264 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||||||| |||||||||| |
|
|
| T |
45567350 |
ttactttttccatcctacgatcttctcatgcgccctgtaaaattttcaaaaat |
45567402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 50890245 - 50890305
Alignment:
| Q |
211 |
gttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccctg |
271 |
Q |
| |
|
|||||||||| | ||| ||| |||||||| ||||||| ||||||||||||||||| |||| |
|
|
| T |
50890245 |
gttacttttcctaccctgctgccttctcacacgccctgcaaaaatttcaaaaatactcctg |
50890305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 211 - 666
Target Start/End: Original strand, 12716057 - 12716512
Alignment:
| Q |
211 |
gttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccctgttagtacttttcggattttaaaatccagacaaaatcaat |
310 |
Q |
| |
|
|||||||||| || ||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| | ||||||||||||| || |||||| || |
|
|
| T |
12716057 |
gttacttttcccaccctactgtcttcttacgcgccctgcaaaaatttcaaaaatacccctgttagtgctttccagattttaaaatccggataaaatcgat |
12716156 |
T |
|
| Q |
311 |
atgacaagggcctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatatccctgtttgtcattctct |
410 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
12716157 |
atgacaagggtcagctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatacccctgtttttcattctct |
12716256 |
T |
|
| Q |
411 |
aacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaataatttgatggtttactag |
510 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
12716257 |
aacaaaggctttgtaagatcttccaaactgttgctactctttagtgttgctgtaccagagaaacttactggtggtactaaagaatatgatggtttactag |
12716356 |
T |
|
| Q |
511 |
ttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgagctggaccataacttgaggtgcttgcactagcttccgacacagcttttgctcc |
610 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12716357 |
ttggtgcttgagtagattcaacactcttaggtttttattgtttgttagctggaccataacttgaggtgcttgcactagcttccgacacaacttttgctca |
12716456 |
T |
|
| Q |
611 |
actagaagattgattattgatattaatcgaagtggaagtttcattcctatattctt |
666 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
12716457 |
attagaagattgattattgatattaatcgaagtggaagtctcattcctattttctt |
12716512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 584 - 660
Target Start/End: Complemental strand, 42711364 - 42711288
Alignment:
| Q |
584 |
actagcttccgacacagcttttgctccactagaagattgattattgatattaatcgaagtggaagtttcattcctat |
660 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||| || |||||||||||||||| |||||||||| |
|
|
| T |
42711364 |
actagcttccgacctagctcttgctccactagaagattgattattggtaataatcgaagtggaagtctcattcctat |
42711288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 26982752 - 26982696
Alignment:
| Q |
211 |
gttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacc |
267 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26982752 |
gttactttttacaccctactgtcttctcacgcgccctacaaaaatttcaaaaatacc |
26982696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 265
Target Start/End: Complemental strand, 3733960 - 3733901
Alignment:
| Q |
206 |
agagcgttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaata |
265 |
Q |
| |
|
|||| |||||||||| ||| |||||| ||||||||||| ||| |||||||||||||||| |
|
|
| T |
3733960 |
agagtgttacttttcccattctactgcattctcacgcgctctgcaaaaatttcaaaaata |
3733901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 206 - 660
Target Start/End: Original strand, 31074361 - 31074814
Alignment:
| Q |
206 |
agagcgttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccctgttagtacttttcggattttaaaatccagacaaaa |
305 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||| ||||| |||| || ||||||||||||||||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
31074361 |
agagtgttacttttcccatcctactgtcttctcacgcaccctgcaaaa-ttccaaaaatacccctgttagtgctttccggattttaaaatccggacaaaa |
31074459 |
T |
|
| Q |
306 |
tcaatatgacaagggcctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatatccctgtttgtcat |
405 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| |
|
|
| T |
31074460 |
tcgatatgacaagggtctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaaacaaatacctctgtttgtcat |
31074559 |
T |
|
| Q |
406 |
tctctaacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaataatttgatggttt |
505 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| | |
|
|
| T |
31074560 |
tctctaacaaaggctttgtaagatcttccaaactgttgctactctttagtgttgctataccagaggaacttactggtggtactaaagaatctgatggtgt |
31074659 |
T |
|
| Q |
506 |
actagttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgagctggaccataacttgaggtgcttgcactagcttccgacacagctttt |
605 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31074660 |
actagttggtgcttgagtagattcaacactcttaggtttttgttgtttgttagctggaccataacttgaggtgcttgcactagcttccgacctagctttt |
31074759 |
T |
|
| Q |
606 |
gctccactagaagattgattattgatattaatcgaagtggaagtttcattcctat |
660 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
31074760 |
gctccactagaagattgattattggtattaatcgaagtggaagtctcattcctat |
31074814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 204 - 655
Target Start/End: Complemental strand, 9677161 - 9676710
Alignment:
| Q |
204 |
taagagcgttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccctgttagtacttttcggattttaaaatccagacaa |
303 |
Q |
| |
|
|||||| |||||||||| || |||||||||||||||||||||||| |||||||| |||||||||||||||||| ||| | |||||||||||| ||||| |
|
|
| T |
9677161 |
taagagtgttacttttcccaccctactgtcttctcacgcgccctgcaaaaattttaaaaatacccctgttagtgttttcctgattttaaaatctggacaa |
9677062 |
T |
|
| Q |
304 |
aatcaatatgacaagggcctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatatccctgtttgtc |
403 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
9677061 |
aatcgatatgacaagggcctgcttttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatatccctgtttttc |
9676962 |
T |
|
| Q |
404 |
attctctaacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaataatttgatggt |
503 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
9676961 |
attctctaacaaaggctttgtaagatcttccaaactgttgctactctttagtgttgttgttccagaggaacttactggtggtactaaagaatctgatggt |
9676862 |
T |
|
| Q |
504 |
ttactagttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgagctggaccataacttgaggtgcttgcactagcttccgacacagctt |
603 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
9676861 |
ttactagttggtgtttgagtagattcaacactcttaggtttttgttgtttgttagctggaccataacttgaggtgcttgcgctagcttccgacacagatt |
9676762 |
T |
|
| Q |
604 |
ttgctccactagaagattgattattgatattaatcgaagtggaagtttcatt |
655 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
9676761 |
ttgctccactagaagattgattattgatattaatccaagtggaagtctcatt |
9676710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 201 - 666
Target Start/End: Complemental strand, 35740755 - 35740291
Alignment:
| Q |
201 |
ttttaagagcgttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccctgttagtacttttcggattttaaaatccaga |
300 |
Q |
| |
|
|||||| || |||||||||| || |||||||||||||||||||||||| |||| |||||||||||||| ||||||| |||||| ||||||| ||||| || |
|
|
| T |
35740755 |
ttttaaaagtgttacttttcccaccctactgtcttctcacgcgccctgcaaaagtttcaaaaatacccatgttagtgcttttcagattttagaatccgga |
35740656 |
T |
|
| Q |
301 |
caaaatcaatatgacaagggcctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatatccctgttt |
400 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
35740655 |
caaaatcgatatgacaagggtctgctgttttcttcaatatgacgtcttta-tcttccaatttctccctcatcttcttcctcaaatcaaatacccctgttt |
35740557 |
T |
|
| Q |
401 |
gtcattctctaacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaataatttgat |
500 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||| |||| ||||| |||||||||||||||||| ||||||||||||||||||||||| ||| |||| |
|
|
| T |
35740556 |
gtcattctctaacaaaggctttgtaagatctttcaaactgttactactttttagtgttgctgtaccataggaacttactggtggtactaaagaatctgat |
35740457 |
T |
|
| Q |
501 |
ggtttactagttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgagctggaccataacttgaggtgcttgcactagcttccgacacag |
600 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || || |
|
|
| T |
35740456 |
ggattactagttggtgcttgagtagattcaacactcttaggtttttgttgtttgttagctggaccataacttgaggtgcatgcactagcttccaacctag |
35740357 |
T |
|
| Q |
601 |
cttttgctccactagaagattgattattgatattaatcgaagtggaagtttcattcctatattctt |
666 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||| |||||||||| |||||||||| ||||| |
|
|
| T |
35740356 |
cttttgctccacaagaagattgattattggtattaatcaaagtggaagtctcattcctattttctt |
35740291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 24167086 - 24167154
Alignment:
| Q |
203 |
ttaagagcgttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccctg |
271 |
Q |
| |
|
||||||| ||||||||| || || ||| ||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
24167086 |
ttaagagtattacttttcccactctgctgccttctcacgcgtcctgcaaaaatttcaaaaatacccctg |
24167154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 267
Target Start/End: Original strand, 16414015 - 16414076
Alignment:
| Q |
206 |
agagcgttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacc |
267 |
Q |
| |
|
|||| |||| ||||| || ||| ||||||||||||||||| || ||||||| |||||||||| |
|
|
| T |
16414015 |
agagtgttatttttcccaccctgctgtcttctcacgcgccttgcaaaaattccaaaaatacc |
16414076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 211 - 666
Target Start/End: Complemental strand, 35421955 - 35421500
Alignment:
| Q |
211 |
gttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccctgttagtacttttcggattttaaaatccagacaaaatcaat |
310 |
Q |
| |
|
||||||||| || ||||||||||||||||||| || ||||||| |||||||| |||||||| |||||||||||||||||| | ||||||||| || |
|
|
| T |
35421955 |
gttactttttccaccctactgtcttctcacgcgttttgcaaaaattccaaaaatatatctgttagtgcttttcggattttaaaattcggacaaaatcgat |
35421856 |
T |
|
| Q |
311 |
atgacaagggcctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatatccctgtttgtcattctct |
410 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35421855 |
atgacaagggtctgctcttttcttcaatatgacgccttttctcttccaatttctcctccatcttcttcctcaaatcaaatagccctgtttgtcattctct |
35421756 |
T |
|
| Q |
411 |
aacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaataatttgatggtttactag |
510 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
35421755 |
aacaaaggctttgtaagatcttccaaactgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaagaatctgatggtttactag |
35421656 |
T |
|
| Q |
511 |
ttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgagctggaccataacttgaggtgcttgcactagcttccgacacagcttttgctcc |
610 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
35421655 |
ttggtgcttgagtagattcaacactcttaggtttttgttgtttgttagctgaaccataacttgaggtgcttgcactagcttccgacctaacttttgctcc |
35421556 |
T |
|
| Q |
611 |
actagaagattgattattgatattaatcgaagtggaagtttcattcctatattctt |
666 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
35421555 |
actagaagattgattattggtgttaatcgaagtggaagtctcattcctattttctt |
35421500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 211 - 531
Target Start/End: Original strand, 53667625 - 53667944
Alignment:
| Q |
211 |
gttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccctgttagtacttttcggattttaaaatccagacaaaatcaat |
310 |
Q |
| |
|
||||||| || || ||||||||||||| |||||||||| |||| ||| |||||||||| ||||||| |||| ||||||||||||||||||||||||| | |
|
|
| T |
53667625 |
gttacttatcccaccctactgtcttcttacgcgccctgcaaaatttt-aaaaatacccttgttagtgctttccggattttaaaatccagacaaaatcgac |
53667723 |
T |
|
| Q |
311 |
atgacaagggcctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatatccctgtttgtcattctct |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
53667724 |
atgacaagggcctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatacccctgtttatcattctcc |
53667823 |
T |
|
| Q |
411 |
aacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaataatttgatggtttactag |
510 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
53667824 |
aacaaaggctttgtaagatcttccaaactgttgctactctttagtgttgctgtaccagtggaacttactggtggtactaaagaatctgatggtttactag |
53667923 |
T |
|
| Q |
511 |
ttgatgcttgagtagattcaa |
531 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
53667924 |
ttggtgcttgagtagattcaa |
53667944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 557 - 666
Target Start/End: Original strand, 53667944 - 53668053
Alignment:
| Q |
557 |
agctggaccataacttgaggtgcttgcactagcttccgacacagcttttgctccactagaagattgattattgatattaatcgaagtggaagtttcattc |
656 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
53667944 |
agctggaccataacttgaggtgcttgcactagcttccgacacagcttttgctccactagaagattgattattgatattaatcgaagtggaagtctcattc |
53668043 |
T |
|
| Q |
657 |
ctatattctt |
666 |
Q |
| |
|
|||| ||||| |
|
|
| T |
53668044 |
ctattttctt |
53668053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 42660144 - 42660202
Alignment:
| Q |
212 |
ttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccct |
270 |
Q |
| |
|
||||||||| || |||| || |||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
42660144 |
ttacttttcccaccctattgccttctcgcgcgccctgtaaaattttcaaaaatacccct |
42660202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 233 - 271
Target Start/End: Original strand, 17646923 - 17646961
Alignment:
| Q |
233 |
cttctcacgcgccctgtaaaaatttcaaaaatacccctg |
271 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
17646923 |
cttctcacgcgccctgcaaaaatttcaataatacccctg |
17646961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 211 - 666
Target Start/End: Original strand, 10900768 - 10901223
Alignment:
| Q |
211 |
gttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccctgttagtacttttcggattttaaaatccagacaaaatcaat |
310 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||| || | |||||||||||||| | ||||||| |||||||||||||||||||| ||||||||| || |
|
|
| T |
10900768 |
gttacttttcccatcatactgtcttctcacgcgctctacagaaatttcaaaaatatctttgttagtgcttttcggattttaaaatccggacaaaatcgat |
10900867 |
T |
|
| Q |
311 |
atgacaagggcctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatatccctgtttgtcattctct |
410 |
Q |
| |
|
|||||||||| || |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10900868 |
atgacaagggtctactcttttcttcaatatgatgctttttctcttccaatttctcccccatcttcttcctcaaatcaaatactcctgtttgtcattctct |
10900967 |
T |
|
| Q |
411 |
aacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaataatttgatggtttactag |
510 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
10900968 |
aacaaaggttttgtaagatcttccaaactgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaagaatctgatggtttactag |
10901067 |
T |
|
| Q |
511 |
ttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgagctggaccataacttgaggtgcttgcactagcttccgacacagcttttgctcc |
610 |
Q |
| |
|
||| | |||||||| ||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
10901068 |
ttggttcttgagtaaattcaacactcttagatttttattgtttgttagctggaccataacttgaggtgcttgcactaacttccgacctagcttttgctcc |
10901167 |
T |
|
| Q |
611 |
actagaagattgattattgatattaatcgaagtggaagtttcattcctatattctt |
666 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
10901168 |
actagaagattgattattagtattaatcgaagtggaagtctcattcctattttctt |
10901223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 302; Significance: 1e-169; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 252 - 666
Target Start/End: Complemental strand, 5197238 - 5196836
Alignment:
| Q |
252 |
aaatttcaaaaatacccctgttagtacttttcggattttaaaatccagacaaaatcaatatgacaagggcctgctcttttcttcaatatgacgccttttc |
351 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5197238 |
aaatttcaaaaatacccctgttagtgctttccggattt------------aaaatcaatatgacaagggcatgctcttttcttcaatatgacgccttttc |
5197151 |
T |
|
| Q |
352 |
tcttccaatttctcccccatcttcttcctcaaatcaaatatccctgtttgtcattctctaacaaaggttttgtaagatcttccaaattgttgctactctt |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
5197150 |
tcttccaatttctcccccatcttcttcctcaaatcaaatacccctgtttgtcattctctaacaaaggctttgtaagatcttccaaactgttgctactctt |
5197051 |
T |
|
| Q |
452 |
tagtgttgctgtaccagaggaacttactggtggtactaaataatttgatggtttactagttgatgcttgagtagattcaacactcttaggtttttgttgt |
551 |
Q |
| |
|
|||||||| ||||||| |||||||||||| |||||||||| ||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5197050 |
tagtgttgttgtaccaaaggaacttactgatggtactaaagaatctgatggtttactagttggtgcttgagaagattcaacactcttaggtttttgttgt |
5196951 |
T |
|
| Q |
552 |
ttgtgagctggaccataacttgaggtgcttgcactagcttccgacacagcttttgctccactagaagattgattattgatattaatcgaagtggaagttt |
651 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5196950 |
ttgttagctggaccataacttgaggtgcttgcactagctttcgacacagcttttgctccactagaagattgattattgatattaatcgaagtggaagtct |
5196851 |
T |
|
| Q |
652 |
cattcctatattctt |
666 |
Q |
| |
|
||||| ||| ||||| |
|
|
| T |
5196850 |
cattcatattttctt |
5196836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 206 - 343
Target Start/End: Original strand, 31382313 - 31382451
Alignment:
| Q |
206 |
agagcgttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaa-atacccctgttagtacttttcggattttaaaatccagacaaa |
304 |
Q |
| |
|
|||| ||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||| || |||||||||||| |||||| |
|
|
| T |
31382313 |
agagtgttactttttccaccctactgtcttctcacgcgccctgtaaaaatttaaaaaaatacccctgttagtgctttccgaattttaaaatccggacaaa |
31382412 |
T |
|
| Q |
305 |
atcaatatgacaagggcctgctcttttcttcaatatgac |
343 |
Q |
| |
|
||| |||||||||||| | |||||||||||||||||||| |
|
|
| T |
31382413 |
atcgatatgacaagggtcagctcttttcttcaatatgac |
31382451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 569 - 666
Target Start/End: Original strand, 31382450 - 31382547
Alignment:
| Q |
569 |
acttgaggtgcttgcactagcttccgacacagcttttgctccactagaagattgattattgatattaatcgaagtggaagtttcattcctatattctt |
666 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| |||||||||||||||||| ||||||| |||||||||||||| |||| |||||||||| ||||| |
|
|
| T |
31382450 |
acttgaggtgcttgcactaacttccgacctagctcttgctccactagaagatttattattggtattaatcgaagtgaaagtctcattcctattttctt |
31382547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 26881144 - 26881209
Alignment:
| Q |
226 |
ctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccctgttagtacttttcggatttta |
291 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
26881144 |
ctactgtcttctcacgcgccctgcaaaaatttcaaaaatacccctgttagtgcttttcagatttta |
26881209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 322 - 666
Target Start/End: Complemental strand, 5641102 - 5640758
Alignment:
| Q |
322 |
ctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatatccctgtttgtcattctctaacaaaggttt |
421 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || |
|
|
| T |
5641102 |
ctgctcttttcttcaatatgacgtcttttctcttccaatttctcccccatcttcttcctcaaatcaaatacccatgtttgtcattctctaacaaaggctt |
5641003 |
T |
|
| Q |
422 |
tgtaagatcttccaaattgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaataatttgatggtttactagttgatgcttga |
521 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | ||||||||||||||| ||||||| |
|
|
| T |
5641002 |
tgtaagatcttccaaactcttgctactctttagtgttgttgtaccagaggaacttactggtggtactaaagaatctaatggtttactagttggtgcttga |
5640903 |
T |
|
| Q |
522 |
gtagattcaacactcttaggtttttgttgtttgtgagctggaccataacttgaggtgcttgcactagcttccgacacagcttttgctccactagaagatt |
621 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||| |
|
|
| T |
5640902 |
gtagattcaacactcttagctttttgttgtttgttagctggaccataacttgaggtgcttgcactagcttccgacctagctttttctccactaaaagatt |
5640803 |
T |
|
| Q |
622 |
gattattgatattaatcgaagtggaagtttcattcctatattctt |
666 |
Q |
| |
|
| |||||| ||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
5640802 |
ggttattggtattaatcgaagtggaagtctcattcctattttctt |
5640758 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 1711623 - 1711585
Alignment:
| Q |
233 |
cttctcacgcgccctgtaaaaatttcaaaaatacccctg |
271 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
1711623 |
cttctcacgcgccctgcaaaaatttcataaatacccctg |
1711585 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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