View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6082_high_50 (Length: 226)

Name: NF6082_high_50
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6082_high_50
NF6082_high_50
[»] chr4 (16 HSPs)
chr4 (78-226)||(193636-193784)
chr4 (146-222)||(55609052-55609128)
chr4 (145-217)||(36123347-36123418)
chr4 (150-212)||(32224048-32224110)
chr4 (145-222)||(1795868-1795945)
chr4 (145-222)||(49585102-49585179)
chr4 (146-222)||(11546788-11546864)
chr4 (146-222)||(50980698-50980774)
chr4 (152-226)||(31468882-31468956)
chr4 (152-222)||(47015113-47015183)
chr4 (154-223)||(48649625-48649694)
chr4 (146-226)||(44257618-44257697)
chr4 (143-226)||(15522458-15522541)
chr4 (174-222)||(46665110-46665158)
chr4 (146-222)||(19165319-19165396)
chr4 (146-222)||(34363659-34363735)
[»] chr8 (15 HSPs)
chr8 (143-222)||(12656030-12656109)
chr8 (155-226)||(33100367-33100438)
chr8 (144-222)||(67046-67124)
chr8 (152-226)||(6440185-6440259)
chr8 (144-222)||(43715982-43716060)
chr8 (145-222)||(33539513-33539590)
chr8 (152-225)||(39453210-39453283)
chr8 (152-222)||(42786551-42786621)
chr8 (146-222)||(25830133-25830209)
chr8 (152-218)||(35067272-35067338)
chr8 (152-226)||(41639691-41639765)
chr8 (146-222)||(38675711-38675787)
chr8 (152-226)||(5574359-5574433)
chr8 (152-222)||(3413086-3413156)
chr8 (144-222)||(35792146-35792224)
[»] chr5 (12 HSPs)
chr5 (146-216)||(38293245-38293315)
chr5 (147-221)||(32639152-32639226)
chr5 (149-216)||(40364682-40364749)
chr5 (145-221)||(4088552-4088628)
chr5 (146-222)||(22098363-22098439)
chr5 (152-218)||(9168061-9168126)
chr5 (152-218)||(16690611-16690677)
chr5 (154-223)||(14321850-14321919)
chr5 (152-226)||(22529074-22529150)
chr5 (154-215)||(34940748-34940809)
chr5 (152-218)||(38493737-38493803)
chr5 (198-226)||(29687181-29687209)
[»] chr2 (22 HSPs)
chr2 (146-222)||(1040621-1040697)
chr2 (145-226)||(40700299-40700380)
chr2 (145-217)||(29449324-29449395)
chr2 (144-226)||(4319810-4319892)
chr2 (145-222)||(12784283-12784360)
chr2 (145-222)||(17999564-17999641)
chr2 (144-226)||(3771475-3771557)
chr2 (152-222)||(42532632-42532702)
chr2 (145-222)||(45420243-45420320)
chr2 (152-218)||(7084608-7084674)
chr2 (149-222)||(4657409-4657482)
chr2 (145-221)||(40357973-40358049)
chr2 (145-223)||(36190907-36190986)
chr2 (174-222)||(6842475-6842523)
chr2 (152-226)||(12070951-12071025)
chr2 (152-218)||(19843596-19843662)
chr2 (152-218)||(21738511-21738577)
chr2 (174-219)||(18982951-18982996)
chr2 (152-221)||(43658605-43658674)
chr2 (143-218)||(26290735-26290810)
chr2 (145-226)||(14328485-14328566)
chr2 (153-226)||(39309513-39309586)
[»] chr3 (20 HSPs)
chr3 (146-222)||(16479740-16479816)
chr3 (144-226)||(34592168-34592250)
chr3 (149-222)||(23868869-23868942)
chr3 (145-226)||(37894128-37894209)
chr3 (145-222)||(52485580-52485657)
chr3 (143-226)||(26772472-26772556)
chr3 (145-221)||(52100369-52100445)
chr3 (147-222)||(48944599-48944674)
chr3 (145-225)||(45186438-45186518)
chr3 (145-222)||(49761073-49761150)
chr3 (143-212)||(52089819-52089888)
chr3 (143-216)||(54099241-54099314)
chr3 (143-218)||(51698970-51699045)
chr3 (152-218)||(1436928-1436994)
chr3 (143-218)||(33796378-33796453)
chr3 (189-226)||(658736-658773)
chr3 (175-219)||(26550348-26550392)
chr3 (152-216)||(36755944-36756008)
chr3 (152-216)||(43720492-43720556)
chr3 (148-180)||(51771354-51771386)
[»] chr1 (15 HSPs)
chr1 (145-226)||(30973656-30973737)
chr1 (152-225)||(32831061-32831134)
chr1 (144-222)||(12999708-12999786)
chr1 (152-220)||(49446687-49446755)
chr1 (147-222)||(49931661-49931736)
chr1 (152-226)||(29359847-29359921)
chr1 (152-226)||(29877401-29877475)
chr1 (145-218)||(30536099-30536172)
chr1 (138-218)||(34817924-34818004)
chr1 (154-222)||(49020301-49020369)
chr1 (143-218)||(11947907-11947982)
chr1 (152-226)||(30745090-30745164)
chr1 (152-226)||(30766541-30766615)
chr1 (152-226)||(30519518-30519592)
chr1 (144-222)||(33076227-33076305)
[»] chr6 (9 HSPs)
chr6 (145-222)||(31869175-31869252)
chr6 (145-226)||(1376470-1376551)
chr6 (145-226)||(1384218-1384299)
chr6 (150-226)||(27612978-27613054)
chr6 (150-222)||(33651128-33651200)
chr6 (146-206)||(16337142-16337202)
chr6 (147-222)||(13423076-13423151)
chr6 (147-225)||(31760176-31760254)
chr6 (145-218)||(28630210-28630283)
[»] chr7 (11 HSPs)
chr7 (146-222)||(31398232-31398308)
chr7 (154-222)||(41590415-41590483)
chr7 (143-221)||(26018149-26018227)
chr7 (144-222)||(46259979-46260055)
chr7 (152-222)||(35822868-35822938)
chr7 (143-219)||(35457093-35457167)
chr7 (155-222)||(44496699-44496766)
chr7 (140-183)||(48145659-48145702)
chr7 (152-226)||(41430045-41430119)
chr7 (152-226)||(42584906-42584980)
chr7 (150-222)||(41589977-41590046)
[»] scaffold0053 (1 HSPs)
scaffold0053 (146-222)||(12605-12681)
[»] scaffold0662 (1 HSPs)
scaffold0662 (152-222)||(1252-1322)


Alignment Details
Target: chr4 (Bit Score: 129; Significance: 6e-67; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 78 - 226
Target Start/End: Complemental strand, 193784 - 193636
Alignment:
Q  78 ggttcaatcccaattaggaaatgcatgtacctttagtgtgtgaaatgtctcgagtatgattataattagagtagtgttatttgaacatctatttccttga 177  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||    
T  193784 ggttcaatcccaattaggaaatgtatgtacctttagtgtgtgaaatgtctcaagtatgattataattaaagtagtgttatttgaacatctatttgcttga 193685  T
Q  178 caaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  193684 caaccaaatagacaatcatgtttttacaaagaaaaatatgtattgacac 193636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 55609052 - 55609128
Alignment:
Q  146 gagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||| |||||||||    
T  55609052 gagtagtgttatttgaacatctatttgcttgacaaccaaatagacaaccttgtttttacaaagaaaaatatgtattg 55609128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 36123347 - 36123418
Alignment:
Q  145 agagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatg 217  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||    
T  36123347 agagtagtgttatttgaacatctatttgcttgacaatcaaatagacaa-catgtttttacaaagaaaagtatg 36123418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 32224110 - 32224048
Alignment:
Q  150 agtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaa 212  Q
    ||||||||| |||||||||||| ||||||||| ||||||| || |||||||||||||||||||    
T  32224110 agtgttattcgaacatctatttgcttgacaactaaatagataaccatgtttttacaaagaaaa 32224048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 1795868 - 1795945
Alignment:
Q  145 agagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    |||||||||||||||||||||| |||| ||| ||||| |||| ||||| ||  ||||||| |||||||||||||||||    
T  1795868 agagtagtgttatttgaacatcaatttgcttaacaactaaatggacaaccacatttttaccaagaaaagtatgtattg 1795945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 49585179 - 49585102
Alignment:
Q  145 agagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    |||||||||||||||||||||  |||| ||||||||| |||| ||||| ||  ||||||| |||||||||||||||||    
T  49585179 agagtagtgttatttgaacattaatttgcttgacaactaaatggacaaccacatttttaccaagaaaagtatgtattg 49585102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 11546788 - 11546864
Alignment:
Q  146 gagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    ||||||||||||||||||||| |||| |||||||| ||||| ||||| ||  |||||||||| |||| |||||||||    
T  11546788 gagtagtgttatttgaacatcaatttacttgacaatcaaatggacaaccacatttttacaaaaaaaattatgtattg 11546864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 50980774 - 50980698
Alignment:
Q  146 gagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    ||||| |||||||| |||||| |||| || |||||| |||| ||||||||  |||||||||||||||||||||||||    
T  50980774 gagtaatgttatttaaacatcaatttgctggacaactaaatggacaatcacatttttacaaagaaaagtatgtattg 50980698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 31468882 - 31468956
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    ||||||||||| ||| || |  |||||||||| |||||||||||| |||||||||||||||  ||||||||||||    
T  31468882 tgttatttgaatatcaatgtgattgacaaccatatagacaatcatctttttacaaagaaaatcatgtattgacac 31468956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 47015183 - 47015113
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    |||||||||||||||  |||  |||||||||| || ||||||||| ||||||||||||||||||| |||||    
T  47015183 tgttatttgaacatcagtttggttgacaaccacattgacaatcatatttttacaaagaaaagtatctattg 47015113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 48649694 - 48649625
Alignment:
Q  154 ttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattga 223  Q
    ||||||||||||| ||||  |||||||| |||||||||| ||  |||| |||||||||||||||||||||    
T  48649694 ttatttgaacatcaatttgtttgacaactaaatagacaaccacattttaacaaagaaaagtatgtattga 48649625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 44257618 - 44257697
Alignment:
Q  146 gagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    ||||||||| ||||||||||| ||||  |||||||| |||| ||||||||  |||||| ||||||||||||||||| ||||    
T  44257618 gagtagtgt-atttgaacatcaatttgtttgacaactaaatggacaatcacatttttataaagaaaagtatgtattaacac 44257697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 15522541 - 15522458
Alignment:
Q  143 ttagagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    |||||| | ||||||||||||||| || |  |||||||||| || ||||| ||| |||||||||||||||  ||||||||||||    
T  15522541 ttagagcaatgttatttgaacatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaatcatgtattgacac 15522458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 46665110 - 46665158
Alignment:
Q  174 ttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    ||||||||||||| ||||| ||| | |||||||||||||||||||||||    
T  46665110 ttgacaaccaaattgacaaccatatatttacaaagaaaagtatgtattg 46665158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 19165319 - 19165396
Alignment:
Q  146 gagtagtgttatttgaacatctatttccttgacaac-caaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    |||| |||||||||||||||| ||||  |||||||  | ||| ||||| ||| ||||||||||||||| |||||||||    
T  19165319 gagttgtgttatttgaacatcaatttgtttgacaaatctaatggacaaccatatttttacaaagaaaaatatgtattg 19165396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 34363735 - 34363659
Alignment:
Q  146 gagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    |||| ||||||||||||||| |||||  |||||| |  || |||||| ||  || ||||||||||||||||||||||    
T  34363735 gagttgtgttatttgaacatttatttgtttgacagcttaacagacaaccacattattacaaagaaaagtatgtattg 34363659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 12656109 - 12656030
Alignment:
Q  143 ttagagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  12656109 ttagagtagtgttatttgaacatctatttgcttgacaaccaaatagacaaccatgtttttacaaagaaaagtatgcattg 12656030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 33100367 - 33100438
Alignment:
Q  155 tatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    |||||||||||| ||||  ||||||||||||||||||| | | |||||||||||||||||||||||||||||    
T  33100367 tatttgaacatccatttgtttgacaaccaaatagacaaccttatttttacaaagaaaagtatgtattgacac 33100438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 67046 - 67124
Alignment:
Q  144 tagagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    ||||||||||||||||||||||  |||| |||||||||||||||||||| ||  |||||||||||||||  ||||||||    
T  67046 tagagtagtgttatttgaacattaatttgcttgacaaccaaatagacaaccacatttttacaaagaaaatcatgtattg 67124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 6440259 - 6440185
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    ||||||||||||||| | ||  ||||||||||||| ||||| ||| |||||||||||||||||||||||||||||    
T  6440259 tgttatttgaacatcaacttggttgacaaccaaattgacaaccatatttttacaaagaaaagtatgtattgacac 6440185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 43716060 - 43715982
Alignment:
Q  144 tagagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    ||||||||||||||||||||||| |||| ||||||||| |||| ||||| ||  ||||||| |||||||||||||||||    
T  43716060 tagagtagtgttatttgaacatcaatttgcttgacaactaaatggacaaccacatttttaccaagaaaagtatgtattg 43715982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 33539590 - 33539513
Alignment:
Q  145 agagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    |||||||||||||||||||||| |||| ||||||||| |||| ||||| ||  ||||| |||||||||||||||||||    
T  33539590 agagtagtgttatttgaacatcaatttgcttgacaactaaatggacaaccacattttttcaaagaaaagtatgtattg 33539513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 39453210 - 39453283
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgaca 225  Q
    ||||||||||||||| ||||  |||||||||| || ||||||||| ||||||||||||||| ||||||||||||    
T  39453210 tgttatttgaacatcaatttgattgacaaccacattgacaatcatatttttacaaagaaaattatgtattgaca 39453283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 42786551 - 42786621
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    ||||||||||||||| | ||  ||||||||||||| |||||||||| |||||||||||||| |||||||||    
T  42786551 tgttatttgaacatcaacttggttgacaaccaaattgacaatcatgattttacaaagaaaaatatgtattg 42786621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 25830133 - 25830209
Alignment:
Q  146 gagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    ||||||||||||||||||||| ||||  || ||||| |||| ||||| ||  |||||||||||||||||||||||||    
T  25830133 gagtagtgttatttgaacatcaatttgtttaacaactaaatggacaaccacatttttacaaagaaaagtatgtattg 25830209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 35067338 - 35067272
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgt 218  Q
    ||||||||||||||| ||||  |||||||||| || ||||| ||| |||||||||||||||||||||    
T  35067338 tgttatttgaacatcaatttggttgacaaccacattgacaaccatatttttacaaagaaaagtatgt 35067272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 41639691 - 41639765
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    ||||||||||||||| ||||  ||||||||||  | ||||| ||| ||||||||||||||||||||| |||||||    
T  41639691 tgttatttgaacatcaatttggttgacaaccacgttgacaaccatatttttacaaagaaaagtatgtgttgacac 41639765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 38675787 - 38675711
Alignment:
Q  146 gagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    |||| |||||||||||||||||||||  |||| || ||||||||||| |||   |||| ||||||||||||||||||    
T  38675787 gagttgtgttatttgaacatctatttatttgataatcaaatagacaaccataactttaaaaagaaaagtatgtattg 38675711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 5574433 - 5574359
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    ||||||||||||||| ||||  |||||||| | || ||||  ||| |||||||||||||||||||||||| ||||    
T  5574433 tgttatttgaacatcaatttggttgacaactatattgacacccatatttttacaaagaaaagtatgtattaacac 5574359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 3413086 - 3413156
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    ||||||||||||||| ||||  |||||||| | || |||| |||| |||||||||||||||  ||||||||    
T  3413086 tgttatttgaacatcaatttggttgacaacaacattgacagtcatatttttacaaagaaaatcatgtattg 3413156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 35792224 - 35792146
Alignment:
Q  144 tagagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    ||||| ||||||||||||||| | |||| ||||||||| |||| ||||| ||  ||||||  || ||||||||||||||    
T  35792224 tagaggagtgttatttgaacaccaatttgcttgacaactaaatggacaaccacatttttatcaaaaaaagtatgtattg 35792146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 38293245 - 38293315
Alignment:
Q  146 gagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtat 216  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  38293245 gagtagtgttatttgaacatctatttgcttgacaaccaaatagacaatcatgtttttacaaagaaaagtat 38293315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 32639226 - 32639152
Alignment:
Q  147 agtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtatt 221  Q
    ||||||||||||||||||||||||| | |||||| ||||||||||||| | ||||||||||||||||||||||||    
T  32639226 agtagtgttatttgaacatctatttgcatgacaatcaaatagacaatcttatttttacaaagaaaagtatgtatt 32639152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 40364749 - 40364682
Alignment:
Q  149 tagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtat 216  Q
    ||||||||||||||||||||||| |||||||| |||||||| || |||||||||| ||||||||||||    
T  40364749 tagtgttatttgaacatctatttgcttgacaatcaaatagataaccatgtttttagaaagaaaagtat 40364682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 4088628 - 4088552
Alignment:
Q  145 agagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtatt 221  Q
    ||||| |||||||||||||||||||||  ||||||||| |   ||||||||| |||||||||||||| |||||||||    
T  4088628 agagttgtgttatttgaacatctatttttttgacaacctatgtgacaatcatatttttacaaagaaatgtatgtatt 4088552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 22098439 - 22098363
Alignment:
Q  146 gagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    ||||||||||||||||||||| |||| ||||| ||  |||| ||||| ||  |||||||||||||||||||||||||    
T  22098439 gagtagtgttatttgaacatcaatttgcttgataattaaatggacaaccacatttttacaaagaaaagtatgtattg 22098363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 9168061 - 9168126
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgt 218  Q
    ||||||||||||||| ||||  |||||||||| || |||||||||  ||||||||||||||||||||    
T  9168061 tgttatttgaacatcaatttggttgacaaccatattgacaatcat-attttacaaagaaaagtatgt 9168126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 16690677 - 16690611
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgt 218  Q
    ||||||||||| ||| ||||  |||||||||| || ||||| ||| |||||||||||||||||||||    
T  16690677 tgttatttgaatatcaatttggttgacaaccacattgacaaccatatttttacaaagaaaagtatgt 16690611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 14321850 - 14321919
Alignment:
Q  154 ttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattga 223  Q
    ||||||||||||| ||||  |||||||||| || ||||| |||  |||||||||||||| ||||||||||    
T  14321850 ttatttgaacatcaatttaattgacaaccatatggacaaccatacttttacaaagaaaattatgtattga 14321919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 22529150 - 22529074
Alignment:
Q  152 tgttatttgaacatctatttcct--tgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    |||||||| ||||||||||| ||  | ||||| ||||| |||||||||||| ||||||||||| ||| |||||||||    
T  22529150 tgttatttaaacatctatttgctcttcacaactaaataaacaatcatgtttctacaaagaaaactatctattgacac 22529074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 34940809 - 34940748
Alignment:
Q  154 ttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagta 215  Q
    ||||||||||||| ||||  |||||||||| || ||||||||| |||||| |||||||||||    
T  34940809 ttatttgaacatcaatttggttgacaaccacattgacaatcatatttttataaagaaaagta 34940748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 38493803 - 38493737
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgt 218  Q
    ||||||||||||||| ||||  |||||||||| || ||||  ||| |||| ||||||||||||||||    
T  38493803 tgttatttgaacatcaatttggttgacaaccacattgacacccatattttaacaaagaaaagtatgt 38493737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 226
Target Start/End: Complemental strand, 29687209 - 29687181
Alignment:
Q  198 tttttacaaagaaaagtatgtattgacac 226  Q
    |||||||||||||||||||||||||||||    
T  29687209 tttttacaaagaaaagtatgtattgacac 29687181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 1040697 - 1040621
Alignment:
Q  146 gagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  1040697 gagtagtgttatttgaacatctatttgcttgacaatcaaatagacaatcacgtttttacaaagaaaagtatgtattg 1040621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 40700380 - 40700299
Alignment:
Q  145 agagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| ||| |||||||||    
T  40700380 agagtagtgttatttgaacatctatttgcttgacaaccaaatagacaatcatgtttttataaaaaaaaatatatattgacac 40700299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 29449395 - 29449324
Alignment:
Q  145 agagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatg 217  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  29449395 agagtagtgttatttgaacatctatttgcttgacaaccaaatagacaa-catgtttttacaaagaaaagtatg 29449324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 144 - 226
Target Start/End: Complemental strand, 4319892 - 4319810
Alignment:
Q  144 tagagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    |||||||||||||||||||||||||||| ||||||||  ||||||||| ||||||||||| |||||||| |||||||||||||    
T  4319892 tagagtagtgttatttgaacatctatttacttgacaattaaatagacagtcatgtttttataaagaaaattatgtattgacac 4319810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 12784283 - 12784360
Alignment:
Q  145 agagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| |||| ||||    
T  12784283 agagtagtgttatttgaacatctatttgcttgacaactaaatagacaaccatgtttttacaaagaaaaatatgcattg 12784360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 17999564 - 17999641
Alignment:
Q  145 agagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    |||||||||||||||||||||||||||  |||||||| |||||||||| | ||||||||||||||||| |||||||||    
T  17999564 agagtagtgttatttgaacatctatttgtttgacaactaaatagacaaccttgtttttacaaagaaaaatatgtattg 17999641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 144 - 226
Target Start/End: Complemental strand, 3771557 - 3771475
Alignment:
Q  144 tagagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    |||||||||||||||||||| || |||| ||||||||| |||| ||||| ||  |||||||||||||||||| ||||||||||    
T  3771557 tagagtagtgttatttgaacgtcaatttgcttgacaactaaatggacaaccacatttttacaaagaaaagtacgtattgacac 3771475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 42532632 - 42532702
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    |||||||||||||||||||| |||||||||||||||||| |  ||||||||| |||||||| |||||||||    
T  42532632 tgttatttgaacatctatttgcttgacaaccaaatagactactatgtttttataaagaaaaatatgtattg 42532702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 45420320 - 45420243
Alignment:
Q  145 agagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    |||||||||||||||||||||| ||||  |||||||| |||||||||| ||  ||||||||||||||| |||||||||    
T  45420320 agagtagtgttatttgaacatcaatttatttgacaactaaatagacaaccacatttttacaaagaaaaatatgtattg 45420243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 7084608 - 7084674
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgt 218  Q
    ||||||||||||||| ||||  |||||||||| || ||||||||| |||||||||||||||||||||    
T  7084608 tgttatttgaacatcaatttggttgacaaccacattgacaatcatatttttacaaagaaaagtatgt 7084674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 4657482 - 4657409
Alignment:
Q  149 tagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    |||| ||||||||||||| |||| |||||||||||||| ||||||||  ||||||||||||||| | |||||||    
T  4657482 tagtattatttgaacatcaatttgcttgacaaccaaatggacaatcacatttttacaaagaaaattgtgtattg 4657409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 40357973 - 40358049
Alignment:
Q  145 agagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtatt 221  Q
    |||||||| ||||||  ||||| ||||  ||||||| ||||||||||||||| ||||||||||||||| ||||||||    
T  40357973 agagtagtattatttacacatcaatttatttgacaatcaaatagacaatcatatttttacaaagaaaattatgtatt 40358049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 36190907 - 36190986
Alignment:
Q  145 agagtagtgttatttgaacatctatttccttgacaaccaaatagac-aatcatgtttttacaaagaaaagtatgtattga 223  Q
    |||||||||||||||||||||||||||  |||| || |||||| || || |||||||||||||||||||| || ||||||    
T  36190907 agagtagtgttatttgaacatctatttgtttgataatcaaataaacaaaccatgtttttacaaagaaaagcatctattga 36190986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 6842475 - 6842523
Alignment:
Q  174 ttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||||||    
T  6842475 ttgagaaccaaatagacaatcatgtttttataaaaaaaagtatgtattg 6842523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 12071025 - 12070951
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    ||||||||||||||| || |  |||||||||| || ||||| ||| |||||||||||||||  ||||||||||||    
T  12071025 tgttatttgaacatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaatcatgtattgacac 12070951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 19843662 - 19843596
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgt 218  Q
    ||||||||||||||| ||||  ||||||| || || |||||| || |||||||||||||||||||||    
T  19843662 tgttatttgaacatcaatttggttgacaatcatattgacaattatatttttacaaagaaaagtatgt 19843596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 21738511 - 21738577
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgt 218  Q
    ||||||||||||||| ||||  |||||||| | || ||||||||| ||||||||||||||| |||||    
T  21738511 tgttatttgaacatcaatttggttgacaacgacattgacaatcatatttttacaaagaaaaatatgt 21738577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 18982996 - 18982951
Alignment:
Q  174 ttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgta 219  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||||    
T  18982996 ttgacaaccaaatggacaaccatatttttacaaagaaaagtatgta 18982951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 43658605 - 43658674
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtatt 221  Q
    ||||||||||||||  ||||  |||||||||| || |||||  || ||||||||||||||||||||||||    
T  43658605 tgttatttgaacattaatttggttgacaaccatattgacaactatttttttacaaagaaaagtatgtatt 43658674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 26290735 - 26290810
Alignment:
Q  143 ttagagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgt 218  Q
    |||||| | ||||||||||||||| ||||  |||| ||| | || ||||||||| ||||||||||||||| |||||    
T  26290735 ttagagcaatgttatttgaacatcaatttggttgataactacattgacaatcatatttttacaaagaaaaatatgt 26290810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 14328566 - 14328485
Alignment:
Q  145 agagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    |||| |||||||||||||||||  | |  |||||||||| || |||||| || ||||||| |||||||  ||||||||||||    
T  14328566 agagcagtgttatttgaacatcattgtgattgacaaccacatggacaattatatttttactaagaaaatcatgtattgacac 14328485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 39309586 - 39309513
Alignment:
Q  153 gttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    |||||||||| ||| ||||  ||||||| || || || |||||| ||||||||||||||||||| |||| ||||    
T  39309586 gttatttgaaaatcaatttggttgacaatcatattgataatcatatttttacaaagaaaagtatatattaacac 39309513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 16479816 - 16479740
Alignment:
Q  146 gagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||| |||||||||    
T  16479816 gagtagtgttatttgaacatctatttgcttgacaaccaaatagacaaccttgtttttacaaagaaaaatatgtattg 16479740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 144 - 226
Target Start/End: Complemental strand, 34592250 - 34592168
Alignment:
Q  144 tagagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    ||||||||||||||||||||||||||||  ||||||  |||||||||||   |||||||||||||||||||||||||||||||    
T  34592250 tagagtagtgttatttgaacatctatttgtttgacagtcaaatagacaacattgtttttacaaagaaaagtatgtattgacac 34592168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 23868869 - 23868942
Alignment:
Q  149 tagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||  ||||||||    
T  23868869 tagtgttatttgaacatctatttgcttgacaaccaaatagacaatcatatttttacaaggaaaaaaatgtattg 23868942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 37894128 - 37894209
Alignment:
Q  145 agagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    |||||||||||||||||||||| |||| ||||||||| |||| ||||| ||  ||||||| |||||||||||||||||||||    
T  37894128 agagtagtgttatttgaacatcaatttgcttgacaactaaatggacaaccacatttttaccaagaaaagtatgtattgacac 37894209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 52485657 - 52485580
Alignment:
Q  145 agagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    ||||| |||||||||||||||||||||  ||||||||| ||| ||||| ||| |||||||||||||||||||||||||    
T  52485657 agagttgtgttatttgaacatctatttgtttgacaacctaatggacaaccatatttttacaaagaaaagtatgtattg 52485580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 26772556 - 26772472
Alignment:
Q  143 ttagagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttac-aaagaaaagtatgtattgacac 226  Q
    |||||||||||||||||||||||||||||  |||||| |||||||||||| | | ||||||| |||||||| |||||||||||||    
T  26772556 ttagagtagtgttatttgaacatctatttgtttgacatccaaatagacaaccttatttttacaaaagaaaactatgtattgacac 26772472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 52100445 - 52100369
Alignment:
Q  145 agagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtatt 221  Q
    |||||||||||||||||||||| |||| ||||||||  |||| ||||||||| ||||||||||||||| ||||||||    
T  52100445 agagtagtgttatttgaacatcaatttgcttgacaattaaatggacaatcatatttttacaaagaaaaatatgtatt 52100369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 48944599 - 48944674
Alignment:
Q  147 agtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    |||||||||||||||||||| |||| ||||||||| ||||  |||||||| ||||||||||||||| |||||||||    
T  48944599 agtagtgttatttgaacatcaatttgcttgacaactaaatgaacaatcatatttttacaaagaaaaatatgtattg 48944674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 45186438 - 45186518
Alignment:
Q  145 agagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgaca 225  Q
    |||||||||||||| ||||||| ||||  ||||||||||||| ||||| |||  |||||||| ||||||||||||||||||    
T  45186438 agagtagtgttattcgaacatcaatttgtttgacaaccaaatggacaaccatacttttacaacgaaaagtatgtattgaca 45186518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 49761073 - 49761150
Alignment:
Q  145 agagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    ||||||||||||||| |||||| |||| ||||||||| |||| ||||| ||  ||||||||||||||| |||||||||    
T  49761073 agagtagtgttatttcaacatcaatttgcttgacaactaaatggacaaccacatttttacaaagaaaaatatgtattg 49761150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 52089819 - 52089888
Alignment:
Q  143 ttagagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaa 212  Q
    ||||||||||||||||| ||||||||||   |||||||| |||||||||||  | |||||||||||||||    
T  52089819 ttagagtagtgttatttaaacatctattaatttgacaactaaatagacaattttatttttacaaagaaaa 52089888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 54099241 - 54099314
Alignment:
Q  143 ttagagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtat 216  Q
    |||||||| ||||||||||||||| ||||  |||||||  | || ||||||||| |||||||||||||||||||    
T  54099241 ttagagtaatgttatttgaacatcaatttggttgacaattacattgacaatcatatttttacaaagaaaagtat 54099314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 51699045 - 51698970
Alignment:
Q  143 ttagagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgt 218  Q
    |||||| | ||||||||||||||| ||||  |||||||||| || ||||| ||| || ||||||||||||||||||    
T  51699045 ttagagcaatgttatttgaacatcaatttggttgacaaccacattgacaaccatattcttacaaagaaaagtatgt 51698970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 1436994 - 1436928
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgt 218  Q
    ||||||||||||||| ||||  || ||||||| || ||||| ||| |||||||||||||||||||||    
T  1436994 tgttatttgaacatcaatttggtttacaaccacattgacaaccatatttttacaaagaaaagtatgt 1436928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 33796453 - 33796378
Alignment:
Q  143 ttagagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgt 218  Q
    |||||||| ||||||||||| ||| ||||  ||||||| || || ||||| ||| |||||| ||||||||||||||    
T  33796453 ttagagtaatgttatttgaaaatcaatttggttgacaatcacattgacaaccatatttttataaagaaaagtatgt 33796378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 658736 - 658773
Alignment:
Q  189 acaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  658736 acaatcatatttttacaaagaaaattatgtattgacac 658773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 26550392 - 26550348
Alignment:
Q  175 tgacaaccaaatagacaatcatgtttttacaaagaaaagtatgta 219  Q
    |||||||||||| ||||||||  ||||||||||||||||| ||||    
T  26550392 tgacaaccaaatggacaatcacatttttacaaagaaaagtgtgta 26550348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 36755944 - 36756008
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtat 216  Q
    ||||||||||| ||| ||||  ||||||| || || ||||| ||| |||||||||||||||||||    
T  36755944 tgttatttgaatatcaatttgattgacaatcacattgacaaccatatttttacaaagaaaagtat 36756008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 43720556 - 43720492
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtat 216  Q
    |||| |||||||||  ||||  |||||||||| || ||||||||| |||||| ||||||||||||    
T  43720556 tgttctttgaacattaatttggttgacaaccacattgacaatcatatttttataaagaaaagtat 43720492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 51771354 - 51771386
Alignment:
Q  148 gtagtgttatttgaacatctatttccttgacaa 180  Q
    |||||||||||||||||||||||| ||||||||    
T  51771354 gtagtgttatttgaacatctatttgcttgacaa 51771386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 30973737 - 30973656
Alignment:
Q  145 agagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    |||||||||||||||||||||| |||| ||||||||| |||| ||||||||  |||||||||||||||||||||||||||||    
T  30973737 agagtagtgttatttgaacatcaatttgcttgacaactaaatggacaatcacatttttacaaagaaaagtatgtattgacac 30973656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 32831061 - 32831134
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgaca 225  Q
    |||| ||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  32831061 tgttgtttgaacatctatttgcctgacaaccaaatagacaaccatgtttttacaaagaaaagtatggattgaca 32831134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 12999708 - 12999786
Alignment:
Q  144 tagagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    ||||||||||||||||||||||| |||| ||||||||| |||| ||||| ||  ||||||||||||||| |||||||||    
T  12999708 tagagtagtgttatttgaacatcaatttgcttgacaactaaatggacaaccacatttttacaaagaaaaatatgtattg 12999786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 49446687 - 49446755
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtat 220  Q
    ||||||||||||||| |||| ||||||||| |||| ||||||||  ||||||||||||||| |||||||    
T  49446687 tgttatttgaacatcaatttgcttgacaactaaatggacaatcacatttttacaaagaaaaatatgtat 49446755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 49931736 - 49931661
Alignment:
Q  147 agtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    |||||||||||||||||||| |||| ||||| ||| |||| ||||| ||  ||||| |||||||||||||||||||    
T  49931736 agtagtgttatttgaacatcaatttgcttgataactaaatggacaaccacatttttccaaagaaaagtatgtattg 49931661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 29359921 - 29359847
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    ||||||||||||||| ||||  |||||||||| || ||||| ||| |||||| |||||||||||||| |||||||    
T  29359921 tgttatttgaacatcaatttgattgacaaccacattgacaaccatatttttataaagaaaagtatgtgttgacac 29359847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 29877475 - 29877401
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    ||||||||||||||| ||||  ||||||| || || ||||| ||| ||||||||||||||| |||||||||||||    
T  29877475 tgttatttgaacatcaattttattgacaatcatatggacaaccatatttttacaaagaaaattatgtattgacac 29877401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 30536172 - 30536099
Alignment:
Q  145 agagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgt 218  Q
    |||||||||||||||||||||| |||| ||| ||||| |||  ||||| ||  |||||||||||||||||||||    
T  30536172 agagtagtgttatttgaacatcaatttgcttaacaactaaacggacaaccacatttttacaaagaaaagtatgt 30536099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 34817924 - 34818004
Alignment:
Q  138 tataattagagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgt 218  Q
    ||||||||||| | ||||||||||||||| ||||  ||||||| || || ||||| ||| ||||||||||||||| |||||    
T  34817924 tataattagagcaatgttatttgaacatcaatttagttgacaatcatattgacaaccatatttttacaaagaaaaatatgt 34818004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 49020301 - 49020369
Alignment:
Q  154 ttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    ||||||||||||| ||||  ||||||||||||| ||||| ||| ||||||||||||||| ||| |||||    
T  49020301 ttatttgaacatcaatttggttgacaaccaaattgacaaccatatttttacaaagaaaaatatatattg 49020369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 11947982 - 11947907
Alignment:
Q  143 ttagagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgt 218  Q
    |||||||| |||||| |||||||||||||   ||||||| |||||||||| ||| |||||||||| ||||| ||||    
T  11947982 ttagagtaatgttatatgaacatctatttgtgtgacaactaaatagacaaccatatttttacaaataaaagcatgt 11947907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 30745164 - 30745090
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    ||||||||||||||  ||||  |||||||||| |||||||| |||  | |||||||||||| |||||||||||||    
T  30745164 tgttatttgaacattaatttgattgacaaccatatagacaaccatactcttacaaagaaaattatgtattgacac 30745090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 30766615 - 30766541
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    ||||||||||||||  ||||  |||||||||| |||||||| |||  | |||||||||||| |||||||||||||    
T  30766615 tgttatttgaacattaatttgattgacaaccatatagacaaccatactcttacaaagaaaattatgtattgacac 30766541  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 30519518 - 30519592
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    ||||||||||||||| || |  |||||||||| || ||||| ||| |||||||||||||||  ||||||| ||||    
T  30519518 tgttatttgaacatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaatcatgtattaacac 30519592  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 33076305 - 33076227
Alignment:
Q  144 tagagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    ||||| ||||||||||||||||| |||| ||||| ||  |||| ||||| ||   |||||||||||||| |||||||||    
T  33076305 tagagcagtgttatttgaacatcaatttgcttgataattaaatggacaaccacaattttacaaagaaaattatgtattg 33076227  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 31869252 - 31869175
Alignment:
Q  145 agagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||| || ||||||||||||| ||| |||||||||    
T  31869252 agagtagtgttatttgaacatctatttgcttgacaatcaaatagacactcttgtttttacaaaggaaaatatgtattg 31869175  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 1376551 - 1376470
Alignment:
Q  145 agagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    |||||||||||||||||||||| |||| ||||||||| |||| ||||| ||  ||||||||||||||| |||||||||||||    
T  1376551 agagtagtgttatttgaacatcaatttgcttgacaactaaatggacaaccacatttttacaaagaaaaatatgtattgacac 1376470  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 1384299 - 1384218
Alignment:
Q  145 agagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    |||||||||||||||||||||| |||| ||||||||| |||| ||||| ||  ||||||||||||||| |||||||||||||    
T  1384299 agagtagtgttatttgaacatcaatttgcttgacaactaaatggacaaccacatttttacaaagaaaaatatgtattgacac 1384218  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 27613054 - 27612978
Alignment:
Q  150 agtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    ||||||||||||||||||||||  ||||||| ||||| ||||| ||| | ||||||||||||| |||||||||||||    
T  27613054 agtgttatttgaacatctatttgtttgacaatcaaatggacaaccatatgtttacaaagaaaaatatgtattgacac 27612978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 33651200 - 33651128
Alignment:
Q  150 agtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    ||||||||||||||||| ||||  ||||||| ||||||||||| ||| ||||||||||||||| |||||||||    
T  33651200 agtgttatttgaacatccatttgtttgacaatcaaatagacaaccatatttttacaaagaaaattatgtattg 33651128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 16337202 - 16337142
Alignment:
Q  146 gagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaa 206  Q
    ||||||||||||||||||||| ||||  ||||||||||||||||||| ||| |||||||||    
T  16337202 gagtagtgttatttgaacatccatttaattgacaaccaaatagacaaccatatttttacaa 16337142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 13423151 - 13423076
Alignment:
Q  147 agtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    |||||||||||||||||||| ||||  ||||||||||| | |||||  || ||||||||||||||| |||||||||    
T  13423151 agtagtgttatttgaacatccatttatttgacaaccaagtggacaactatatttttacaaagaaaaatatgtattg 13423076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 31760176 - 31760254
Alignment:
Q  147 agtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgaca 225  Q
    |||||||||||||||||||| ||||  |||||||||||||| |||| || |||| |||||| ||| |||| ||||||||    
T  31760176 agtagtgttatttgaacatccatttgtttgacaaccaaataaacaaccacgtttatacaaaaaaatgtatatattgaca 31760254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 28630283 - 28630210
Alignment:
Q  145 agagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgt 218  Q
    |||||| |||||| |||||||||||||   ||||||| |||||||||| ||| |||||||||| ||||| ||||    
T  28630283 agagtaatgttatatgaacatctatttgtgtgacaactaaatagacaaccatatttttacaaataaaagcatgt 28630210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 31398308 - 31398232
Alignment:
Q  146 gagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    |||||||||||||||||||| |||||  ||||||||||||||||||| | ||||||||||||||||| |||||||||    
T  31398308 gagtagtgttatttgaacatttatttgtttgacaaccaaatagacaaccttgtttttacaaagaaaaatatgtattg 31398232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 41590415 - 41590483
Alignment:
Q  154 ttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||| |||||||||    
T  41590415 ttatttgaacatctatttgcttgacaaccaaatagacaaccatgtttttacaaggaaaaatatgtattg 41590483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 26018227 - 26018149
Alignment:
Q  143 ttagagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtatt 221  Q
    |||||||||| |||||||||| ||||||| ||||||||  |||||||||||||| |||||| |||||||||||||||||    
T  26018227 ttagagtagttttatttgaacgtctatttgcttgacaattaaatagacaatcatatttttataaagaaaagtatgtatt 26018149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 46259979 - 46260055
Alignment:
Q  144 tagagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    |||||||||||||||| || ||||||   ||||| || |||||||| || ||||||||||||||||||| |||||||||    
T  46259979 tagagtagtgttatttcaagatctatg--cttgagaatcaaatagataaccatgtttttacaaagaaaaatatgtattg 46260055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 35822868 - 35822938
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    ||||||||||||||| ||||  ||||||||||  | ||||| ||| ||||||||||||||| |||||||||    
T  35822868 tgttatttgaacatcaatttggttgacaaccacgttgacaaccatatttttacaaagaaaaatatgtattg 35822938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 35457093 - 35457167
Alignment:
Q  143 ttagagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgta 219  Q
    |||||| |||||| ||| |||||||| ||  ||||||||||||||||||| |||||||||  ||| |||||||||||    
T  35457093 ttagagaagtgtttttttaacatctacttgtttgacaaccaaatagacaaccatgttttt--aaaaaaaagtatgta 35457167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 44496699 - 44496766
Alignment:
Q  155 tatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    |||||||||||| ||||  |||||||  |||| ||||| ||| ||||||||||||||| |||||||||    
T  44496699 tatttgaacatcaatttgtttgacaattaaatggacaaccatatttttacaaagaaaattatgtattg 44496766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 48145702 - 48145659
Alignment:
Q  140 taattagagtagtgttatttgaacatctatttccttgacaacca 183  Q
    |||| |||||||||||||||||||||| |||| |||||||||||    
T  48145702 taataagagtagtgttatttgaacatcaatttgcttgacaacca 48145659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 41430045 - 41430119
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    ||||||||||||||| || |  |||||||||| || ||||| ||| |||||||||||||||  || |||||||||    
T  41430045 tgttatttgaacatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaatcatatattgacac 41430119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 42584980 - 42584906
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattgacac 226  Q
    ||||||||||||||| || |  |||||||||| || ||||| ||| |||||||||||||||  || |||||||||    
T  42584980 tgttatttgaacatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaatcatctattgacac 42584906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 41589977 - 41590046
Alignment:
Q  150 agtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    ||||||||||||||||  ||||  |||||||| |||||||||||||| |||||| || ||||| |||||||||    
T  41589977 agtgttatttgaacat--atttgtttgacaac-aaatagacaatcatatttttataaggaaaaatatgtattg 41590046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 12681 - 12605
Alignment:
Q  146 gagtagtgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    |||||| |||||||||||||| |||| ||||||||| |||| ||||| ||  ||||||| |||||||||||||||||    
T  12681 gagtagagttatttgaacatcaatttgcttgacaactaaatggacaaccacatttttaccaagaaaagtatgtattg 12605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 1322 - 1252
Alignment:
Q  152 tgttatttgaacatctatttccttgacaaccaaatagacaatcatgtttttacaaagaaaagtatgtattg 222  Q
    |||||||||||||||  |||  |||||||||| || ||||||||| ||||||||||||||||||| |||||    
T  1322 tgttatttgaacatcagtttggttgacaaccacattgacaatcatatttttacaaagaaaagtatctattg 1252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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