View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6082_low_10 (Length: 449)
Name: NF6082_low_10
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6082_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 43420011 - 43419803
Alignment:
| Q |
12 |
acagattatagaacagtaaaattcacatctatgttttgacttgacaccactctttcctacccaattctctcctctcaaatcctttgcctacgcaaagtac |
111 |
Q |
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| T |
43420011 |
acagattatagaacagtaaaattcacatctatgttttgacttgacaccactctttcctacccaattctctcctctcaaatcctttgcctacgcaaagtac |
43419912 |
T |
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| Q |
112 |
ttaaacaagattgtagttacaactatcaacttttgtttaaataataatatttaagtcaagaatatggtcgatggtaattggtaacactaaatatatgatt |
211 |
Q |
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| T |
43419911 |
ttaaacaagattgtagttacaactatcaacttttgtttaaataataatatttaagtcaagaatatggtcgatggtaattggtaacactaaatatatgatt |
43419812 |
T |
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| Q |
212 |
ggaagatgt |
220 |
Q |
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| T |
43419811 |
ggaagatgt |
43419803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 260 - 407
Target Start/End: Complemental strand, 43419756 - 43419609
Alignment:
| Q |
260 |
ccaattacaattttgtaaactaataataaggcaaagtactaatactaatagaacttgtccaaagaaatagggccatataacccaagtagtctcacaacta |
359 |
Q |
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| T |
43419756 |
ccaattacaattttgtaaactaataataaggcaaagtactaatactaatagaacttgtccaaagaaatagggccatataacccaagtagtctcacaacta |
43419657 |
T |
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| Q |
360 |
tctagaaggattagacgttagacttacctacaaagcaacctaaaaata |
407 |
Q |
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| T |
43419656 |
tctagaaagattagacgttagacttacctacaaagcaacctaaaaata |
43419609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 362 - 431
Target Start/End: Complemental strand, 43419588 - 43419519
Alignment:
| Q |
362 |
tagaaggattagacgttagacttacctacaaagcaacctaaaaatagcacaaaactttgatgtatgtcct |
431 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43419588 |
tagaaggattagacgtgagacttacctacaaagcaacctaaaaatagcacaaaactttgatgtatatcct |
43419519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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