View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6082_low_11 (Length: 414)
Name: NF6082_low_11
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6082_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 8974308 - 8974702
Alignment:
| Q |
1 |
gaaattatcaaagattacatacaaagtaactctaactccagttcaatagaaaaaatttctttcaagataacatcttttggtgctaaaccagctcctagcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8974308 |
gaaattatcaaagattacatacaaagtaactctaactccagttcaatagaaaaaatttctttcaagataacatcttttggtgctaaaccagctcctagcg |
8974407 |
T |
|
| Q |
101 |
tggatttttatagttcaagaggtccttcagaaagttgcccaaatgttttgaaacctgacattacaggtcctggtacatcaatcttagctgcatggcctac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8974408 |
tggatttttatagttcaagaggtccttctgaaagttgcccaaatgttttgaaacctgacattacaggtcctggtacatcaatcttagctgcatggcctac |
8974507 |
T |
|
| Q |
201 |
aaatattcctgtgttggagtttgggtcaagtaaagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtagga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8974508 |
aaatattcctgtgttggagtttgggtcacgtaaagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtagga |
8974607 |
T |
|
| Q |
301 |
gcacttttgaaagctgcacatgttgattggagccctgcagctattaggtcagcaatgatgacaacatcagacatatttgataatactaaggaact |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8974608 |
gcacttttgaaagctgcacatgttgattggagccctgcagctattaggtcagcaatgatgacaacatcagacatatttgataatactaaggaact |
8974702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 8 - 398
Target Start/End: Original strand, 8962919 - 8963309
Alignment:
| Q |
8 |
tcaaagattacatacaaagtaactctaactccagttcaatagaaaaaatttctttcaagataacatcttttggtgctaaaccagctcctagcgtggattt |
107 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
8962919 |
tcaaagattacatacatagtaactttaactctagttcaatagaaaaaatgtctttcaagattacatcttttggtgctaaaccagtacctagggtggattt |
8963018 |
T |
|
| Q |
108 |
ttatagttcaagaggtccttcagaaagttgcccaaatgttttgaaacctgacattacaggtcctggtacatcaatcttagctgcatggcctacaaatatt |
207 |
Q |
| |
|
||||||||| ||||| || ||| | ||||| ||| |||| ||||||||||||||||||| ||| ||||| ||||||||||||||||||||| ||||| || |
|
|
| T |
8963019 |
ttatagttctagagggccatcaaagagttgtccatatgtgttgaaacctgacattacagctcccggtacgtcaatcttagctgcatggcctccaaatgtt |
8963118 |
T |
|
| Q |
208 |
cctgtgttggagtttgggtcaagtaaagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttt |
307 |
Q |
| |
|
||||||||||| |||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
8963119 |
cctgtgttggattttgggtctcataaagtcgtcaacaagttcaattttttaactggaacatctatgtcatgtcctcatgttgccggtgtaggagcacttt |
8963218 |
T |
|
| Q |
308 |
tgaaagctgcacatgttgattggagccctgcagctattaggtcagcaatgatgacaacatcagacatatttgataatactaaggaacttat |
398 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8963219 |
tgaaaggagcacatgctgattggagcccgacagctattaggtcggcaatgatgacaacatcagacatatttgataacactaaggaacttat |
8963309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 42 - 394
Target Start/End: Complemental strand, 8946128 - 8945779
Alignment:
| Q |
42 |
ttcaatagaaaaaatttctttcaagataacatcttttggtgctaaaccagctcctagcgtggatttttatagttcaagaggtccttcagaaagttgccca |
141 |
Q |
| |
|
|||||||| ||| || ||||||||| || || |||||| |||||||||| ||| | || | | || |||||| ||||| || ||| | ||||| ||| |
|
|
| T |
8946128 |
ttcaatagcaaatatgtctttcaagttatcaatttttggaactaaaccagcacctggtgtttactcttctagttcgagaggaccatcaaatagttgtcca |
8946029 |
T |
|
| Q |
142 |
aatgttttgaaacctgacattacaggtcctggtacatcaatcttagctgcatggcctacaaatattcctgtgttggagtttgggtcaagtaaagtcttca |
241 |
Q |
| |
|
|||| ||||||||||||||||| | ||||| |||||||||||||||||||||||| ||||| ||||||||||||| || | | ||||||||| |
|
|
| T |
8946028 |
tatgtcttgaaacctgacattacggctcctgatacatcaatcttagctgcatggcccacaaaacttcctgtgttggatcctgtgaccg---aagtcttca |
8945932 |
T |
|
| Q |
242 |
acaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttttgaaagctgcacatgttgattggagccctgcagc |
341 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| ||||| |||||||||||| ||||||||||||||||| |||| || | ||||||||||||||||||||| |
|
|
| T |
8945931 |
acaagttcaaatttttaactggaacatctacgtcatgtcctcatgttgccggtgtaggagcacttttaaaaggagcgcgtgttgattggagccctgcagc |
8945832 |
T |
|
| Q |
342 |
tattaggtcagcaatgatgacaacatcagacatatttgataatactaaggaac |
394 |
Q |
| |
|
||| ||||| ||||| |||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
8945831 |
tataaggtcggcaattatgacaacatcaaacatatatgataatactaaggaac |
8945779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 108 - 399
Target Start/End: Original strand, 8958005 - 8958296
Alignment:
| Q |
108 |
ttatagttcaagaggtccttcagaaagttgcccaaatgttttgaaacctgacattacaggtcctggtacatcaatcttagctgcatggcctacaaatatt |
207 |
Q |
| |
|
||||||||||||||| |||||| | ||||| ||| || |||||||||||||||| || | |||||||||| ||||||||||||||||| |||||| || |
|
|
| T |
8958005 |
ttatagttcaagagggccttcaaatagttgtccatatattttgaaacctgacatcactgctcctggtacaaatatcttagctgcatggcccacaaatgtt |
8958104 |
T |
|
| Q |
208 |
cctgtgttggagtttgggtcaagtaaagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttt |
307 |
Q |
| |
|
|||||| ||| || ||| | ||| ||||||||||||||||| | ||||||||||||||||| ||| |||||||||||| ||||| | ||||||| |
|
|
| T |
8958105 |
cctgtgatgggtttggggactcataagatcttcaacaagttcaatgtgataagtggaacatctatggcatgtcctcatgttgcaggtgtcgcggcacttt |
8958204 |
T |
|
| Q |
308 |
tgaaagctgcacatgttgattggagccctgcagctattaggtcagcaatgatgacaacatcagacatatttgataatactaaggaacttatt |
399 |
Q |
| |
|
|||||| ||||| | ||||||||||||||| || ||| |||| ||||| |||||||| || |||||| |||||||||||||||||| |||| |
|
|
| T |
8958205 |
tgaaaggagcacacggtgattggagccctgccgcgattcggtcggcaattatgacaacgtcggacataattgataatactaaggaacatatt |
8958296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 280 - 394
Target Start/End: Complemental strand, 9948363 - 9948250
Alignment:
| Q |
280 |
cctcatgttgctggtgtaggagcacttttgaaagctgcacatgttgattggagccctgcagctattaggtcagcaatgatgacaacatcagacatatttg |
379 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||| |||||||| |||||||||||| ||||||||||| |||||||||||| |||||||| |
|
|
| T |
9948363 |
cctcatgttgctggtgttggagcacttttgaaaggagcacatgctgattgga-ccctgcagctataaggtcagcaattatgacaacatcaaccatatttg |
9948265 |
T |
|
| Q |
380 |
ataatactaaggaac |
394 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
9948264 |
ataatgctaaggaac |
9948250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 27 - 394
Target Start/End: Complemental strand, 21687306 - 21686942
Alignment:
| Q |
27 |
taactctaactccagttcaatagaaaaaatttctttcaagataacatcttttggtgctaaaccagctcctagcgtggatttttatagttcaagaggtcct |
126 |
Q |
| |
|
|||||||||| | |||||||||| ||| || |||||||||| |||| |||| |||| |||| || | ||||| |||||||||||||| ||||| || || |
|
|
| T |
21687306 |
taactctaacgctagttcaatagcaaacatgtctttcaagaaaacagctttcggtgttaaatcaacacctagtgtggatttttatagctcaaggggacca |
21687207 |
T |
|
| Q |
127 |
tcagaaagttgcccaaatgttttgaaacctgacattacaggtcctggtacatcaatcttagctgcatggcctacaaatattcctgtgttggagtttgggt |
226 |
Q |
| |
|
||| | ||||| ||| |||| |||||||||||||| || | |||||||||||||||||||||||||||||| ||||| ||||||||| | |||||| |
|
|
| T |
21687206 |
tcaaatagttgtccatatgtgttgaaacctgacatcactgctcctggtacatcaatcttagctgcatggcccacaaacgttcctgtgtccaattttggg- |
21687108 |
T |
|
| Q |
227 |
caagtaaagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttttgaaagctgcacatgttga |
326 |
Q |
| |
|
| | ||||||| ||||| |||||||| || ||||||||||||||||| ||| |||||||| ||||||| ||| ||||| |||| ||||| || |
|
|
| T |
21687107 |
--actgaagtctttaacaacttcaatttgatagatggaacatctatgtcatgtccacatgttgcaggtgtagcagcgcttttaaaaggggcacacaatgg |
21687010 |
T |
|
| Q |
327 |
ttggagccctgcagctattaggtcagcaatgatgacaacatcagacatatttgataatactaaggaac |
394 |
Q |
| |
|
||||||||| || |||||||||| ||||| |||||||||||||||||||| || ||||||||||||| |
|
|
| T |
21687009 |
ttggagcccgtcatctattaggtcggcaattatgacaacatcagacatattagacaatactaaggaac |
21686942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 58 - 388
Target Start/End: Complemental strand, 19375989 - 19375659
Alignment:
| Q |
58 |
tctttcaagataacatcttttggtgctaaaccagctcctagcgtggatttttatagttcaagaggtccttcagaaagttgcccaaatgttttgaaacctg |
157 |
Q |
| |
|
|||||||||| |||| |||||||| ||||||| | ||||| || ||| |||||||||||||||| |||||| | | ||| ||| ||| |||||||| | |
|
|
| T |
19375989 |
tctttcaagaaaacaatttttggtgttaaaccaacacctagtgttgatctttatagttcaagagggccttcaaataattgtccatttgtgttgaaacccg |
19375890 |
T |
|
| Q |
158 |
acattacaggtcctggtacatcaatcttagctgcatggcctacaaatattcctgtgttggagtttgggtcaagtaaagtcttcaacaagttcaatttttt |
257 |
Q |
| |
|
|||| || | || ||||||||||||||||||||||||||| |||||| ||| ||||||||| || ||| | |||||||||||||||||||||||| | |
|
|
| T |
19375889 |
acatcactgctcttggtacatcaatcttagctgcatggccaacaaatgttcatgtgttggatttggggacttttaaagtcttcaacaagttcaatttgat |
19375790 |
T |
|
| Q |
258 |
aagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttttgaaagctgcacatgttgattggagccctgcagctattaggtcagcaatg |
357 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||| ||| ||| | ||||||||||| ||||||||||||||||| || |||| ||| | || || || |
|
|
| T |
19375789 |
aagtggaacatctatggcatgtcctcacgttgcaggtatagcattacttttgaaaggagcacatgttgattggagtccgacagcaattcgttctgcgatt |
19375690 |
T |
|
| Q |
358 |
atgacaacatcagacatatttgataatacta |
388 |
Q |
| |
|
|||||||||||||||||| | || ||||||| |
|
|
| T |
19375689 |
atgacaacatcagacataatagacaatacta |
19375659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 58 - 394
Target Start/End: Complemental strand, 34962895 - 34962559
Alignment:
| Q |
58 |
tctttcaagataacatcttttggtgctaaaccagctcctagcgtggatttttatagttcaagaggtccttcagaaagttgcccaaatgttttgaaacctg |
157 |
Q |
| |
|
||||||| || |||| |||||| |||||||||| ||||| || |||| |||||||||||||| || ||| | ||||| ||| ||| |||||||||| |
|
|
| T |
34962895 |
tctttcatgaaaacagtttttggaactaaaccagcacctagtgttgattcatatagttcaagagggccatcatatagttgtccatttgtgttgaaacctg |
34962796 |
T |
|
| Q |
158 |
acattacaggtcctggtacatcaatcttagctgcatggcctacaaatattcctgtgttggagtttgggtcaagtaaagtcttcaacaagttcaatttttt |
257 |
Q |
| |
|
||||||| | |||||||| || |||||||| ||||||||||||||| |||||||| |||| |||| ||| |||| | |||| ||| |||||||| | |
|
|
| T |
34962795 |
acattactgcgcctggtacttcgatcttagcggcatggcctacaaatgttcctgtgatggaatttgagtctcataaaattttcagcaaattcaatttgat |
34962696 |
T |
|
| Q |
258 |
aagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttttgaaagctgcacatgttgattggagccctgcagctattaggtcagcaatg |
357 |
Q |
| |
|
|||||||||||||||| | | ||||||||||| ||||| | || |||||||||| | ||| |||||||||||| ||||| ||| |||| ||||| |
|
|
| T |
34962695 |
aagtggaacatctatggcgtgccctcatgttgcaggtgtcgcggcgcttttgaaaggagtgcatagtgattggagcccagcagcaattcggtcggcaata |
34962596 |
T |
|
| Q |
358 |
atgacaacatcagacatatttgataatactaaggaac |
394 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34962595 |
atgacaacatcagacatatttgataattctaaggaac |
34962559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 374
Target Start/End: Original strand, 49008292 - 49008430
Alignment:
| Q |
236 |
tcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttttgaaag--ctgcacatgttgattggagc |
333 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||| ||||||| ||| || ||||| ||||||| ||||||||| |||| ||||| ||| ||||||| |
|
|
| T |
49008292 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcac-ccttg-ttggagc |
49008389 |
T |
|
| Q |
334 |
cctgcagctattaggtcagcaatgatgacaacatcagacat |
374 |
Q |
| |
|
|| ||||| ||||| || || |||||||||||||||||||| |
|
|
| T |
49008390 |
ccagcagccattagatcggctatgatgacaacatcagacat |
49008430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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