View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6082_low_14 (Length: 396)
Name: NF6082_low_14
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6082_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 12 - 381
Target Start/End: Complemental strand, 26124215 - 26123849
Alignment:
| Q |
12 |
atacccaacttcaccaattctaagtgatgagataaccaaaaattccaccaacaaaagtgttcttgtaaaggcaattggtgttgatcaagagtctcctgat |
111 |
Q |
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| T |
26124215 |
atactcaacttcaccaattccaagtgatgagataaccaaaaattccaccaacaaaagtgttcttgtaaaggcaattggtgttgatcaagagtctcctgat |
26124116 |
T |
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| Q |
112 |
tgtagtacgaggccatggatatgtagcacaggagaaattccaccaagaacggtatgttgtggaaatcggtgtgtcgatgttacgaaagatgtgaataact |
211 |
Q |
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| T |
26124115 |
tgtagtacgaggccatggatatgtagcacaggagaaattccaccaagaatggtatgttgtggaaatcggtgtgtcgatgttacgaatgatgtgaataact |
26124016 |
T |
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| Q |
212 |
gtgggatttgtggggttatttgtccattagttggaaattttcaatgttgtaatggtatatgttcagacataaatattaacccttttaattgtggaggttg |
311 |
Q |
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| T |
26124015 |
gtgggttttgtggggttatttgtccattagttggaaattttcaatgttgtaatggtatatgttcagacataaatattaacccttttaattgtggaggttg |
26123916 |
T |
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| Q |
312 |
tggaaggatatgtccttttttatgcttgctcggtaggtgtccttttacaccgcctacacccccaccactt |
381 |
Q |
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| T |
26123915 |
tggaaagatatgtcc---tttatgcttgtttggtaggtgtccttttacaccgcctacacccccaccactt |
26123849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 34 - 330
Target Start/End: Original strand, 8298226 - 8298522
Alignment:
| Q |
34 |
agtgatgagataaccaaaaattccaccaacaaaagtgttcttgtaaaggcaattggtgttgatcaagagtctcctgattgtagtacgaggccatggatat |
133 |
Q |
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| T |
8298226 |
agtgatgaaataaacaaaaattccaccaacaccagtgttgttgttgaagcagatagagtagatcaagtatcacctaattgtggtgcaacaccatggatat |
8298325 |
T |
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| Q |
134 |
gtagcacaggagaaattccaccaagaacggtatgttgtggaaatcggtgtgtcgatgttacgaaagatgtgaataactgtgggatttgtggggttatttg |
233 |
Q |
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| T |
8298326 |
gtagtacaggagaatttccaccaagagctttatgttgcagaaatcgttgtgttgatgtaacaaatgatttaaacaattgtgggttttgtggagttatttg |
8298425 |
T |
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| Q |
234 |
tccattagttggaaattttcaatgttgtaatggtatatgttcagacataaatattaacccttttaattgtggaggttgtggaaggatatgtcctttt |
330 |
Q |
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| T |
8298426 |
tccattgatcggtaattggaaatgttgtaacggtgtgtgtacaaacataaattttaacccttttagttgtggtgattgtggaagaacatgtcctttt |
8298522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 326
Target Start/End: Original strand, 16174074 - 16174144
Alignment:
| Q |
256 |
tgttgtaatggtatatgttcagacataaatattaacccttttaattgtggaggttgtggaaggatatgtcc |
326 |
Q |
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| T |
16174074 |
tgttgtaatggtttttgtgcaaacataaatttcgaccctttaaactgtgggggttgtggaaggatatgtcc |
16174144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 326
Target Start/End: Original strand, 16177869 - 16177939
Alignment:
| Q |
256 |
tgttgtaatggtatatgttcagacataaatattaacccttttaattgtggaggttgtggaaggatatgtcc |
326 |
Q |
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| T |
16177869 |
tgttgtaatggtttttgtgcaaacataaatttcgaccctttaaactgtgggggttgtggaaggatatgtcc |
16177939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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