View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6082_low_15 (Length: 389)
Name: NF6082_low_15
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6082_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 31467262 - 31466900
Alignment:
| Q |
18 |
atcttcagatgttatagcacccttgtgcattagttttgtcaccaacatccatttagttgccttagactttgatgaagacacattcaaaaatgacaaaatg |
117 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31467262 |
atcttcaaatgttatagcacccttgtgcattagttttgtcaccaacatccatttagttgccttagactttgatgaagacacattcaaaaatgacaaaatg |
31467163 |
T |
|
| Q |
118 |
aattgaaaaacagacaagttcatcgtaatcacttccctaaacactctaattatagagcaaaggtgatgatcaagttctaaaatttgggacaccccaaatt |
217 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31467162 |
aattgaaaaacagacaagttcattgtaatcacttccctaaacactctaattatagagcaaaggtgatgatcaagttctaaaatttgggacaccccaaatt |
31467063 |
T |
|
| Q |
218 |
tactatccatatgcttcaaacttgcgatcaacttggtgacatttttcttcatcatttttgtgaaaaatttgtattcttccacacttctttcaacacttga |
317 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31467062 |
tactatccatatgcttcaaacttgtgatcaacttggtgacatttttcttcatcagttttgtgaaaaatttgtattcttccacacttctttcaacacttga |
31466963 |
T |
|
| Q |
318 |
atcaccttttcttctccttagacaagagtgaagggctcgaacattttccttgatttgaagaat |
380 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31466962 |
atcaccttttcttctccttagacaagagtgaagggcttgaacattttccttgatttgaagaat |
31466900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 31477108 - 31476752
Alignment:
| Q |
18 |
atcttcagatgttatagcacccttgtgcattagttttgtcaccaacatccatttagttgccttagactttgatgaagacacattcaaaaatgacaaaatg |
117 |
Q |
| |
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||||||| |||||||| | || |||||||| ||||| | ||| ||| ||||||||| || ||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
31477108 |
atcttcacatgttataacccctttgtgcatcagtttagccacaaacttccatttagctgtctttgactttgatgaagacacattcaaaaatgacaaaatg |
31477009 |
T |
|
| Q |
118 |
aattgaaaaacagacaagttcatcgtaatcacttccctaaacactctaattatagagcaaaggtgatgatcaagttctaaaatttgggacaccccaaatt |
217 |
Q |
| |
|
|||||||||||||| |||||||| || ||||||||||| |||||||| | | | ||| ||||||||||||||| |||||| |||| ||||||| |
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|
| T |
31477008 |
aattgaaaaacagataagttcattactatgacttccctaaatactctaatcaaacaagaaaagtgatgatcaagttccaaaattgaagacatgccaaatt |
31476909 |
T |
|
| Q |
218 |
tactatccatatgcttcaaacttgcgatcaacttggtgacatttttcttcatcatttttgtgaaaaatttgtattcttccacacttctttcaacacttga |
317 |
Q |
| |
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|||||| ||| ||||||||| || |||||||||| | |||||||| |||||| |||||||||| |||||||||||| |||||||||||||||||||||| |
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|
| T |
31476908 |
tactattcatgtgcttcaaagatgtgatcaacttgttaacattttttttcatcttttttgtgaagaatttgtattctgccacacttctttcaacacttga |
31476809 |
T |
|
| Q |
318 |
atcaccttttcttctccttagacaagagtgaagggctcgaacattttccttgatttg |
374 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| |
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|
| T |
31476808 |
atcaccttttcttctccttagagaagagtgaagggcttgaacattttccttggtttg |
31476752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 73 - 380
Target Start/End: Complemental strand, 31502417 - 31502110
Alignment:
| Q |
73 |
gttgccttagactttgatgaagacacattcaaaaatgacaaaatgaattgaaaaacagacaagttcatcgtaatcacttccctaaacactctaattatag |
172 |
Q |
| |
|
|||| ||| |||||||||||||||| | |||| ||||||||||||| |||||||| |||||| ||||| | || ||||| ||||||||||||| | || |
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|
| T |
31502417 |
gttgtctttgactttgatgaagacatagtcaagaatgacaaaatgatttgaaaaatagacaaattcattgctatgacttctttaaacactctaatcaaag |
31502318 |
T |
|
| Q |
173 |
agcaaaggtgatgatcaagttctaaaatttgggacaccccaaatttactatccatatgcttcaaacttgcgatcaacttggtgacatttttcttcatcat |
272 |
Q |
| |
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| ||||||| ||||||||||| |||||| |||| ||||||||||||||||| ||||||||| || |||||||||| | |||||||| |||||| | |
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|
| T |
31502317 |
aataaaggtgttgatcaagttccaaaattgaagacatgccaaatttactatccatttgcttcaaagatgtgatcaacttgttaacattttttttcatctt |
31502218 |
T |
|
| Q |
273 |
ttttgtgaaaaatttgtattcttccacacttctttcaacacttgaatcaccttttcttctccttagacaagagtgaagggctcgaacattttccttgatt |
372 |
Q |
| |
|
||||||||| |||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31502217 |
ttttgtgaagaatttgtattgtgtcacacttatttcaacacttgaatcaccttttcttctccttagacaagagtgaagggcttgaacattttccttgatt |
31502118 |
T |
|
| Q |
373 |
tgaagaat |
380 |
Q |
| |
|
|||||||| |
|
|
| T |
31502117 |
tgaagaat |
31502110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 211 - 365
Target Start/End: Original strand, 9301508 - 9301662
Alignment:
| Q |
211 |
ccaaatttactatccatatgcttcaaacttgcgatcaacttggtgacatttttcttcatcatttttgtgaaaaatttgtattcttccacacttctttcaa |
310 |
Q |
| |
|
||||||||||| |||||||| || ||| || ||||||||| |||||||| ||||||||| | |||||||||||||| |||||| | |||||| |||||| |
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|
| T |
9301508 |
ccaaatttactttccatatgttttaaagatgtgatcaactttgtgacattcttcttcatcttctttgtgaaaaatttatattctgctacacttttttcaa |
9301607 |
T |
|
| Q |
311 |
cacttgaatcaccttttcttctccttagacaagagtgaagggctcgaacattttc |
365 |
Q |
| |
|
|||||||| || ||||| || || ||| |||||||||| | | |||||||||| |
|
|
| T |
9301608 |
tgcttgaatctccctttctccttctaagagaagagtgaagtgattgaacattttc |
9301662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 211 - 374
Target Start/End: Original strand, 9305126 - 9305289
Alignment:
| Q |
211 |
ccaaatttactatccatatgcttcaaacttgcgatcaacttggtgacatttttcttcatcatttttgtgaaaaatttgtattcttccacacttctttcaa |
310 |
Q |
| |
|
||||||||||| |||||||| || ||| || ||||||||| |||||||| ||||||||| | |||||||||||||| |||||| | |||||| |||||| |
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| T |
9305126 |
ccaaatttactttccatatgttttaaagatgtgatcaactttgtgacattcttcttcatcttctttgtgaaaaatttatattctgctacacttttttcaa |
9305225 |
T |
|
| Q |
311 |
cacttgaatcaccttttcttctccttagacaagagtgaagggctcgaacattttccttgatttg |
374 |
Q |
| |
|
|||||||| || ||| | || || ||| |||||||||| | | |||||||||| || ||||| |
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|
| T |
9305226 |
tgcttgaatctccctttttccttctaagagaagagtgaagtgattgaacattttctttaatttg |
9305289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 374
Target Start/End: Original strand, 9297293 - 9297456
Alignment:
| Q |
211 |
ccaaatttactatccatatgcttcaaacttgcgatcaacttggtgacatttttcttcatcatttttgtgaaaaatttgtattcttccacacttctttcaa |
310 |
Q |
| |
|
||||||||| | |||||||| || ||| || ||||||||| |||||||| ||||||||| | || ||||||||||| ||||| | |||||| |||||| |
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|
| T |
9297293 |
ccaaatttagtttccatatgttttaaatatgtgatcaactttgtgacattcttcttcatcttcttagtgaaaaatttatattcggctacacttgtttcaa |
9297392 |
T |
|
| Q |
311 |
cacttgaatcaccttttcttctccttagacaagagtgaagggctcgaacattttccttgatttg |
374 |
Q |
| |
|
|||||||| || ||||| || || ||| |||||||||| | | |||||||||| || ||||| |
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|
| T |
9297393 |
tgcttgaatctccctttctccttctaagagaagagtgaagtgattgaacattttctttaatttg |
9297456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 374
Target Start/End: Complemental strand, 9367965 - 9367802
Alignment:
| Q |
211 |
ccaaatttactatccatatgcttcaaacttgcgatcaacttggtgacatttttcttcatcatttttgtgaaaaatttgtattcttccacacttctttcaa |
310 |
Q |
| |
|
||||||||||| |||||||| || ||| || ||||||||| |||||||| ||||||||| | |||||||| ||||| ||||| | |||||| |||||| |
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|
| T |
9367965 |
ccaaatttactttccatatgttttaaagatgtgatcaactttgtgacattcttcttcatcttctttgtgaagaatttatattcggctacacttttttcaa |
9367866 |
T |
|
| Q |
311 |
cacttgaatcaccttttcttctccttagacaagagtgaagggctcgaacattttccttgatttg |
374 |
Q |
| |
|
|||||||| | ||||| || || ||| ||||||||| | | |||||||||| || ||||| |
|
|
| T |
9367865 |
tgcttgaatctgcctttctccttctaagagcagagtgaagtgtttgaacattttctttaatttg |
9367802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 374
Target Start/End: Original strand, 9351655 - 9351818
Alignment:
| Q |
211 |
ccaaatttactatccatatgcttcaaacttgcgatcaacttggtgacatttttcttcatcatttttgtgaaaaatttgtattcttccacacttctttcaa |
310 |
Q |
| |
|
||||||||||| |||||||| || ||| || |||||||| ||||| || ||||||||| | |||||||| ||||| |||||| | |||||| |||||| |
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|
| T |
9351655 |
ccaaatttactttccatatgttttaaagatgtaatcaactttgtgacgttcttcttcatcttctttgtgaagaatttatattctgctacacttttttcaa |
9351754 |
T |
|
| Q |
311 |
cacttgaatcaccttttcttctccttagacaagagtgaagggctcgaacattttccttgatttg |
374 |
Q |
| |
|
||||| || || ||||| || || ||| ||||||||| | | |||||||||| || ||||| |
|
|
| T |
9351755 |
tgcttgattctccctttctccttctaagagaagagtgaattgattgaacattttcgttaatttg |
9351818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 349
Target Start/End: Original strand, 9331927 - 9332065
Alignment:
| Q |
211 |
ccaaatttactatccatatgcttcaaacttgcgatcaacttggtgacatttttcttcatcatttttgtgaaaaatttgtattcttccacacttctttcaa |
310 |
Q |
| |
|
||||||||||| |||||||| || ||| || |||||||| ||||| || ||||||||| | |||||||| ||||| |||||| | |||||| |||||| |
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|
| T |
9331927 |
ccaaatttactttccatatgttttaaagatgtaatcaactttgtgacgttcttcttcatcttctttgtgaagaatttatattctgctacacttttttcaa |
9332026 |
T |
|
| Q |
311 |
cacttgaatcaccttttcttctccttagacaagagtgaa |
349 |
Q |
| |
|
||||| || || ||||| || || ||| ||||||||| |
|
|
| T |
9332027 |
tgcttgattctccctttctccttctaagagaagagtgaa |
9332065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 374
Target Start/End: Complemental strand, 9356749 - 9356586
Alignment:
| Q |
211 |
ccaaatttactatccatatgcttcaaacttgcgatcaacttggtgacatttttcttcatcatttttgtgaaaaatttgtattcttccacacttctttcaa |
310 |
Q |
| |
|
||||||||||| ||||| || || ||| || ||||||||| | |||||||||||||||| | |||||||| ||||| ||||| | ||||| |||| | |
|
|
| T |
9356749 |
ccaaatttactttccatctgttttaaagatgtgatcaactttgcgacatttttcttcatcttctttgtgaagaatttatattcggctacactagtttcga |
9356650 |
T |
|
| Q |
311 |
cacttgaatcaccttttcttctccttagacaagagtgaagggctcgaacattttccttgatttg |
374 |
Q |
| |
|
|||||||| || ||||| || || ||| ||||||||| | | |||||||||| || ||||| |
|
|
| T |
9356649 |
tgcttgaatccccctttctccttctaagagcagagtgaagtgattgaacattttctttaatttg |
9356586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 365
Target Start/End: Original strand, 9288186 - 9288308
Alignment:
| Q |
243 |
gatcaacttggtgacatttttcttcatcatttttgtgaaaaatttgtattcttccacacttctttcaacacttgaatcaccttttcttctccttagacaa |
342 |
Q |
| |
|
||||||||| |||||||| ||||||||| | |||||||| ||||| ||||| | |||||| |||| | |||||||| | ||||| || || || || |
|
|
| T |
9288186 |
gatcaactttgtgacattcttcttcatcttctttgtgaataatttatattcggctacacttgtttcgatgcttgaatctctctttctccttctaagggaa |
9288285 |
T |
|
| Q |
343 |
gagtgaagggctcgaacattttc |
365 |
Q |
| |
|
|||||||||| | |||||||||| |
|
|
| T |
9288286 |
gagtgaagggattgaacattttc |
9288308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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