View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6082_low_17 (Length: 382)
Name: NF6082_low_17
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6082_low_17 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 31 - 382
Target Start/End: Original strand, 26880754 - 26881105
Alignment:
| Q |
31 |
tgcatgaatgtaagaaacaaagcaaacttgtcagttaatgaagaccaagaaccaattacgacacgtacctgaacaaatataattttaagaacaattaatc |
130 |
Q |
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| T |
26880754 |
tgcatgaatgtaagaaacaaagcaaacttgtcagttaatgaagaccaagaacaaatcacgatacgtacctgaacacatacaattttaagaagaattaatc |
26880853 |
T |
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| Q |
131 |
acctaaggctcactaccatcagggttgaaaatcctcatcgtatagtcagtgccattgataccaggcaagacaaatataactccatcagcaccaacactga |
230 |
Q |
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|||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
26880854 |
acctcaggctcactaccatcagagttgaaaatcctcattgtatagtcagtgccattgataccaggcaagacaaatataacttcatctgcaccaacactga |
26880953 |
T |
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| Q |
231 |
agttacgatcacagagttgcacagctttcacggaactaatctttggctcagaagagtctctattatcaatctattcataagagaaaatatcataaaaact |
330 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26880954 |
agttacgatcacagagttgcacaactttctcggaactaatctttggctcagaagagtctctattatcgatctattcataagagaaaatatcataaaaact |
26881053 |
T |
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| Q |
331 |
taaaagggagtgttattttatgggaggaatcagagaggaatgtggactcacc |
382 |
Q |
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| T |
26881054 |
taaaagggagtgttattttatgggaggaatcagagaggaatgtggactcacc |
26881105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 131 - 310
Target Start/End: Original strand, 40252464 - 40252643
Alignment:
| Q |
131 |
acctaaggctcactaccatcagggttgaaaatcctcatcgtatagtcagtgccattgataccaggcaagacaaatataactccatcagcaccaacactga |
230 |
Q |
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|||| ||||||||||||||||| ||||||||||||||| ||||| ||||| |||| |||||||||||| ||||| |||||||||||||||||||||| | |
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| T |
40252464 |
acctcaggctcactaccatcagagttgaaaatcctcattgtataatcagtaccatcgataccaggcaatacaaagataactccatcagcaccaacaccaa |
40252563 |
T |
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| Q |
231 |
agttacgatcacagagttgcacagctttcacggaactaatctttggctcagaagagtctctattatcaatctattcataa |
310 |
Q |
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||||||||||||| ||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40252564 |
agttacgatcacatagttgtacagctttctctgaactaatctttggctcagaagagtctctattatcaatctattcataa |
40252643 |
T |
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