View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6082_low_19 (Length: 361)
Name: NF6082_low_19
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6082_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 13858359 - 13858595
Alignment:
| Q |
15 |
acttaccaaaacgactgaaattatatactatgtaagattaggacagactttaaaacaattaagagaaacaagtgtatggtagagattacaaagattataa |
114 |
Q |
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| T |
13858359 |
acttaccaaaacgactgaaattatatactatgtaagattaggacagactttaaaacaattaagagaaacaagtgtatggtagagattacaaagattataa |
13858458 |
T |
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| Q |
115 |
aaaatgaataccttgaattattattcctaacagtttttgcatttccaaatgcttctaaaacaggattggactgcataagtgcatatgattagcatagtga |
214 |
Q |
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| T |
13858459 |
aaaatgaataccttgaattattattcctaacagtttttgcatttccaaatgcttctaaaacaggattggactgcataagtgcatatgattagcatagtga |
13858558 |
T |
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| Q |
215 |
gtaataataacatctgaaattattatcggtgtttaca |
251 |
Q |
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| T |
13858559 |
gtaataataacatctgaaattattatcggtgtttaca |
13858595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 13858634 - 13858690
Alignment:
| Q |
292 |
ctttatagacatttggctttcttacctcaagaacttgttgctccacagaccgtccct |
348 |
Q |
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| T |
13858634 |
ctttatagacatttggctttcttacctcaagaacttgttgctccacagaccgtccct |
13858690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 29902724 - 29902788
Alignment:
| Q |
123 |
taccttgaattattattcctaacagtttttgcatttccaaatgcttctaaaacaggattggactg |
187 |
Q |
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| T |
29902724 |
tacctcgaattgttgtttctaacagtctttgcatttccaaaggcttctagaacaggattggactg |
29902788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 35831967 - 35832033
Alignment:
| Q |
124 |
accttgaattattattcctaacagtttttgcatttccaaatgcttctaaaacaggattggactgcat |
190 |
Q |
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| T |
35831967 |
acctggaattgttattcctgacagttttggcattgccaaatgcttccagaactggatttgactgcat |
35832033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 39806318 - 39806253
Alignment:
| Q |
124 |
accttgaattattattcctaacagtttttgcatttccaaatgcttctaaaacaggattggactgca |
189 |
Q |
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| T |
39806318 |
accttgaattattattcctgacagtctttgcattgccaaaagcttctaggacaggatttgactgca |
39806253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 47693871 - 47693811
Alignment:
| Q |
129 |
gaattattattcctaacagtttttgcatttccaaatgcttctaaaacaggattggactgca |
189 |
Q |
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| T |
47693871 |
gaattgttattcctgacagttttagcattaccaaatgcttccaaaactggatttgactgca |
47693811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 26465343 - 26465279
Alignment:
| Q |
123 |
taccttgaattattattcctaacagtttttgcatttccaaatgcttctaaaacaggattggactg |
187 |
Q |
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| T |
26465343 |
taccttgaattgttgtttttcacagttttggcatttccaaatgcttccaacactggattggactg |
26465279 |
T |
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