View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6082_low_20 (Length: 347)
Name: NF6082_low_20
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6082_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 331
Target Start/End: Complemental strand, 18716418 - 18716098
Alignment:
| Q |
11 |
atcatcaacaacaaaatggaaattttgcaaatgagattcttgttggaagtccagaagattacacttatgtgacttaccatgatgaatctaataaacctat |
110 |
Q |
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| T |
18716418 |
atcatcaccaacaaaatggaaattttgcaaatgagattcttgttggaagtccagaagattacacttatgtgacttaccatgatgaatctaataaacctat |
18716319 |
T |
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| Q |
111 |
aactaaggttttttatgatggtggtgaagaaagtggaattttgaaacatgattgttatacctcaaaaaacatcaacaacaacaacgttggtgttttcata |
210 |
Q |
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| T |
18716318 |
cactaaggttttttatgatggtggtgaagaaagtggaattttgaaacatgattgttatacctcaaaaaacatcaacaacaacaacgttggtgttttcaaa |
18716219 |
T |
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| Q |
211 |
agatccccaccaacacaaactttagctcaagctgaaccatcatatccaaccttggattttctcaattcatgtcatttgtgcaaaaagaatcttcatggca |
310 |
Q |
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| T |
18716218 |
agatccccaccaacacaaactttagctcaagctgaaccatcatatccaaccttggattttctcaattcatgtcatttgtgcaaaaagaatcttcatggca |
18716119 |
T |
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| Q |
311 |
aagacatattcatgtacaggt |
331 |
Q |
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| T |
18716118 |
aagacatattcatgtacaggt |
18716098 |
T |
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