View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6082_low_21 (Length: 325)
Name: NF6082_low_21
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6082_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 4840360 - 4840541
Alignment:
| Q |
4 |
cgagtgagaagaaaaagcatgcagaaaacgacttctattagttcgacagtttcgtcaaagggtgcagtgaatgaatttgtatgagatgatgggttagggt |
103 |
Q |
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| T |
4840360 |
cgagtgagaaggaaaagcatgcagaaaacgacttctattagttcgacagtttcgtcaaagggtgcagtgaatgaatttgtatgagatgatgggttagggt |
4840459 |
T |
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| Q |
104 |
tctattgagaagaatttctgagtggagatgagacggttcagtgagaagttgagatgatggcatatggtttgaagggttcgga |
185 |
Q |
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| T |
4840460 |
tctattgagaagaatttctgggtggagatgagagggttcagtgagaagttgagatgatggcatatggtttgaagggttcgga |
4840541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 4837187 - 4837215
Alignment:
| Q |
186 |
ctacaaaaagcatgcatgaatacttatgc |
214 |
Q |
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| T |
4837187 |
ctacaaaaagcatgcatgaatacttatgc |
4837215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 4 - 188
Target Start/End: Original strand, 14360772 - 14360956
Alignment:
| Q |
4 |
cgagtgagaagaaaaagcatgcagaaaacgacttctattagttcgacagtttcgtcaaagggtgcagtgaatgaatttgtatgagatgatgggttagggt |
103 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14360772 |
cgagtgagaaggaaaagcgtgcagaaaacgacttctattagttcgtcagtttcgtcaaagggtgcagtgaatgaatttgtatgagatgatgggttagggt |
14360871 |
T |
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| Q |
104 |
tctattgagaagaatttctgagtggagatgagacggttcagtgagaagttgagatgatggcatatggtttgaagggttcggacta |
188 |
Q |
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| T |
14360872 |
tctattgagaagaatttctgggtggagatgagagggttcagtgagaagttgagatgatggcatatggtttgaagggttcggacta |
14360956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 4 - 188
Target Start/End: Original strand, 13069608 - 13069792
Alignment:
| Q |
4 |
cgagtgagaagaaaaagcatgcagaaaacgacttctattagttcgacagtttcgtcaaagggtgcagtgaatgaatttgtatgagatgatgggttagggt |
103 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13069608 |
cgagtgagaaggaaaagcgtgcagaaaacgacttctattagttcgacagtttcatcaaagggtgcagtgaatgaattcgtatgagatgatgggttagggt |
13069707 |
T |
|
| Q |
104 |
tctattgagaagaatttctgagtggagatgagacggttcagtgagaagttgagatgatggcatatggtttgaagggttcggacta |
188 |
Q |
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| T |
13069708 |
tctattgagaagaatttctgggtggagatgagagggttcagtgagaagttgagatgatggcatatggtttgaagggttcggacta |
13069792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 4 - 188
Target Start/End: Complemental strand, 28157537 - 28157353
Alignment:
| Q |
4 |
cgagtgagaagaaaaagcatgcagaaaacgacttctattagttcgacagtttcgtcaaagggtgcagtgaatgaatttgtatgagatgatgggttagggt |
103 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28157537 |
cgagtgagaaggaaaagcgtgcagaaaacgacttctattagttcgacagtttcatcaaagggtgcagtgaatgaattcgtatgagatgatgggttagggt |
28157438 |
T |
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| Q |
104 |
tctattgagaagaatttctgagtggagatgagacggttcagtgagaagttgagatgatggcatatggtttgaagggttcggacta |
188 |
Q |
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|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28157437 |
tctattgagaagaatttctgggtggagatgagagggttcagtgagaagttgagatgatgacatatggtttgaagggttcggacta |
28157353 |
T |
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