View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6082_low_23 (Length: 314)
Name: NF6082_low_23
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6082_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 47436480 - 47436191
Alignment:
| Q |
1 |
attgtatcattataatttgatgattctttgagcacatgtatgcatgcagacacaacaggaacttcaccaaaatgatctt--gggggatgagaatgataag |
98 |
Q |
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| T |
47436480 |
attgtatcattataatttgatgattctttgagcacatgtatgcatgcagacacaacaggaacttcaccaaaatgatcttttgagggatgagaatgataag |
47436381 |
T |
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| Q |
99 |
cttcgtgctgaaaatgagatctataagggggcactaaaagacactttatgtacaaattgtactggtccaatttctattggtgaaatgtcatctaacgaca |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47436380 |
cttcgtgctgaaaatgagatctataagggggcactaaaagacactttatgtacaaattgtactggtccaatttctattggtgaaatgtcatctaacgaca |
47436281 |
T |
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| Q |
199 |
atcaacttagaattgagaatgctagattaaaggttgaggtatatatacttttaaattgcttatttatagtctctactataaaacaattta |
288 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47436280 |
atcagcttagaattgagaatgctagattaaaggttgaggtatatatacttttaaattgcttatttatagtctctactataaaacaattta |
47436191 |
T |
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