View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6082_low_27 (Length: 269)
Name: NF6082_low_27
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6082_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 4550966 - 4551220
Alignment:
| Q |
1 |
cattttttatgtctaatttaacctaatgcatatactttcagattgtaggcagctgttaaattaacagagattttgtttacacacgtttataatagaaaat |
100 |
Q |
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| T |
4550966 |
cattttttatgtctaatttaacctaatgcatatactttgagattgtaggcagctgttaaattaacagagattttgtttacacacgtttataatagaaaat |
4551065 |
T |
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| Q |
101 |
gtcgagaaataatgaaattttaaagcatgttagtctccatggaatcctgtcattgccctgaatgttttttgtgaacatttttagcactctcgagactcaa |
200 |
Q |
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| T |
4551066 |
gtcgagaaataatgaaattttaaagcatgttagtctccatggaatcctgtcattgccctgaa---tttttgtgaacatttttagcactctcgagactcaa |
4551162 |
T |
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| Q |
201 |
ttataatgtccttgcccatttctccttgcactccaatatatacgtgtttatatatttt |
258 |
Q |
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| T |
4551163 |
ttataatgtccttgcccatttctccttgcactccaatatatacgtgtttatatttttt |
4551220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 2473556 - 2473440
Alignment:
| Q |
3 |
ttttttatgtctaatttaacctaatgcatatactttcagattgtaggcagctgttaaattaacagagattttgtttac-acacgtttataatagaaaatg |
101 |
Q |
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||||||||||| | || ||||||||||| |||||| |||||| ||||||||||||||||| |||||| ||||| ||||||||||||| ||||||| |
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| T |
2473556 |
ttttttatgtccatttcaacctaatgcacatacttacagattttaggcagctgttaaatt------gattttatttacaacacgtttataatcgaaaatg |
2473463 |
T |
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| Q |
102 |
tcgagaaataatgaaattttaaa |
124 |
Q |
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|| ||||||||| |||||||||| |
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| T |
2473462 |
tcaagaaataattaaattttaaa |
2473440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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