View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6082_low_29 (Length: 252)
Name: NF6082_low_29
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6082_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 7761463 - 7761707
Alignment:
| Q |
1 |
cattttcatcaacagttaggagacatttactaacaaatactcgtataactgggaaaaaatcacaagcttcttgtatccttttaacataatcccatctttc |
100 |
Q |
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| T |
7761463 |
cattttcatcaacagttaagagacatttactaacaaatactcgtataactgggaaaaaatcacaagcttcttgtatccttttaacataatcccatctttc |
7761562 |
T |
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| Q |
101 |
ccctttgaaaaaacaagcaatgtccagaaaagctttttgttccaagtcagataggccattgtagctgatttccaatacaccctgaatctcagcatctgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7761563 |
ccctttgaaaaaacaagcaatgtccagaaaagctttttgttccaagtcagataggccattgtagctgatttccaatacaccctgaatctcagcatctgga |
7761662 |
T |
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| Q |
201 |
acctttctatatctctgcaattcaatatccgattcctctctgctc |
245 |
Q |
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| T |
7761663 |
acctttctatatctctgcaattcaatatcccattcctctatgctc |
7761707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 7837880 - 7838107
Alignment:
| Q |
1 |
cattttcatcaacagttaggagacatttactaacaaatactcgtataactgggaaaaaatcacaagcttcttgtatccttttaacataatcccatctttc |
100 |
Q |
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|||||||||||||| ||| |||||||| |||||||| ||||||||||||||| | ||| ||||||| || |||||||||||||||||||||||||||| |
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| T |
7837880 |
cattttcatcaacaattaacagacatttgctaacaaagactcgtataactgggtagaaaccacaagcatcgagtatccttttaacataatcccatctttc |
7837979 |
T |
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| Q |
101 |
ccctttgaaaaaacaagcaatgtccagaaaagctttttgttccaagtcagataggccattgtagctgatttccaatacaccctgaatctcagcatctgga |
200 |
Q |
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| T |
7837980 |
gcctttgaaaaaacaagcaatgtccagaaaaactttctggtccaagtcagataggcctttgtagctgatttccagtacactttgaatctcagcatctgga |
7838079 |
T |
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| Q |
201 |
acctttctatatctctgcaattcaatat |
228 |
Q |
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| T |
7838080 |
acctttctatatttctgcagttcaatat |
7838107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 7754364 - 7754598
Alignment:
| Q |
1 |
cattttcatcaacagttaggagacatttactaacaaatactcgtataactgggaaaaaatcacaagcttcttgtatccttttaacataatcccatctttc |
100 |
Q |
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|
|||||||||||||||||| ||||||||||||| ||| |||||||||||||| | ||||||||||| ||| ||||||||||| |||||||||||||||| |
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| T |
7754364 |
cattttcatcaacagttatgagacatttactattaaacgctcgtataactgggtagaaatcacaagcgtctagtatccttttagcataatcccatctttc |
7754463 |
T |
|
| Q |
101 |
ccctttgaaaaaacaagcaatgtccagaaaagctttttgttccaagtcagataggccattgtagctgatttccaatacaccctgaatctcagcatctgga |
200 |
Q |
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||||||||| ||||| || ||||| |||||| ||| || ||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||| |
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| T |
7754464 |
ccctttgaagaaacacgcgatgtctagaaaaattttctggtccaagtcagataggcctttgtagctgatttccattacaccttgaatctcagcatctggg |
7754563 |
T |
|
| Q |
201 |
acctttctatatctctgcaattcaatatccgattc |
235 |
Q |
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|||||||||||| |||| | |||||||||| |||| |
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| T |
7754564 |
acctttctatatttctgaagttcaatatcccattc |
7754598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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