View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6082_low_35 (Length: 248)
Name: NF6082_low_35
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6082_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 40662218 - 40661998
Alignment:
| Q |
11 |
atttgttagtgtttttacaatatctttttgctctcttatatgaccttatttaagtgcnnnnnnnnnnngttgctcttggggaaatgtttagaatgctgga |
110 |
Q |
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| T |
40662218 |
attttttattgtttttacaatatctttttgctctcttatatgaccttatttaagtgcttttttttt--gttgctcttggggaaatgtttagaatgctgga |
40662121 |
T |
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| Q |
111 |
tctcaagggttcaacccaggcttgattgttctcctggttattggtgggttgctgttgacatttctcattggaaattatgcgctctacgtctatgcacaga |
210 |
Q |
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| T |
40662120 |
tctcaagggttcaacccagacttgattgttctcctcgttattggtgggttgctgttgacatttctcattggaaattatgcggtctacgtctatgcacaga |
40662021 |
T |
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| Q |
211 |
aggccctccctcccagaaaaaag |
233 |
Q |
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||||||||||||||||||||||| |
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| T |
40662020 |
aggccctccctcccagaaaaaag |
40661998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 34 - 233
Target Start/End: Complemental strand, 40675751 - 40675554
Alignment:
| Q |
34 |
ctttttgctctcttatatgaccttatttaagtgcnnnnnnnnnnngttgctcttggggaaatgtttagaatgctggatctcaagggttcaacccaggctt |
133 |
Q |
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| T |
40675751 |
ctttttgctctgttatatgaccttatttaagtgcttttttttt--gttgctcttggggaaatgtttagaatgctggatctcaagggttcaacccaggctt |
40675654 |
T |
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| Q |
134 |
gattgttctcctggttattggtgggttgctgttgacatttctcattggaaattatgcgctctacgtctatgcacagaaggccctccctcccagaaaaaag |
233 |
Q |
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| T |
40675653 |
gattgttctcctggttattggtgggttgctgttgacatttctcattggaaattacgcgctctacgtttatgcacagaaggccctccctcctagaaaaaag |
40675554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 89 - 233
Target Start/End: Complemental strand, 40656866 - 40656722
Alignment:
| Q |
89 |
gggaaatgtttagaatgctggatctcaagggttcaacccaggcttgattgttctcctggttattggtgggttgctgttgacatttctcattggaaattat |
188 |
Q |
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||||||| ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
40656866 |
gggaaatatttagaaagctggatctcaagggttcaacccaggcttagtagttctcctggttattggtgggctgctgttgacattcctcattggaaattat |
40656767 |
T |
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| Q |
189 |
gcgctctacgtctatgcacagaaggccctccctcccagaaaaaag |
233 |
Q |
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||||| || || ||||||||||||||||||||||| ||||||||| |
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| T |
40656766 |
gcgctttatgtttatgcacagaaggccctccctcctagaaaaaag |
40656722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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