View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6082_low_36 (Length: 247)

Name: NF6082_low_36
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6082_low_36
NF6082_low_36
[»] chr2 (23 HSPs)
chr2 (112-238)||(13238674-13238800)
chr2 (115-234)||(35316822-35316941)
chr2 (110-234)||(23259441-23259565)
chr2 (115-234)||(28564889-28565008)
chr2 (115-201)||(45625038-45625124)
chr2 (115-187)||(11864913-11864985)
chr2 (117-231)||(2063353-2063467)
chr2 (158-226)||(30709115-30709183)
chr2 (123-227)||(36929720-36929823)
chr2 (151-234)||(374990-375073)
chr2 (151-238)||(8988848-8988935)
chr2 (118-194)||(40640706-40640783)
chr2 (151-234)||(23459841-23459924)
chr2 (119-238)||(30857642-30857760)
chr2 (151-220)||(13780509-13780579)
chr2 (136-234)||(21454476-21454572)
chr2 (117-234)||(19908777-19908892)
chr2 (117-206)||(35315527-35315615)
chr2 (124-227)||(15709772-15709874)
chr2 (117-227)||(38397085-38397194)
chr2 (151-220)||(40254144-40254214)
chr2 (117-234)||(36758823-36758939)
chr2 (120-200)||(4446860-4446940)
[»] chr1 (27 HSPs)
chr1 (109-238)||(50294016-50294145)
chr1 (110-238)||(48327108-48327235)
chr1 (115-234)||(50484383-50484502)
chr1 (115-234)||(12151764-12151883)
chr1 (115-238)||(23861911-23862037)
chr1 (115-186)||(12380836-12380907)
chr1 (115-186)||(12384903-12384974)
chr1 (116-234)||(40328275-40328390)
chr1 (117-238)||(18976265-18976386)
chr1 (115-205)||(7840638-7840728)
chr1 (115-195)||(45978041-45978121)
chr1 (115-226)||(32361266-32361377)
chr1 (151-234)||(52280034-52280117)
chr1 (161-238)||(24977233-24977310)
chr1 (170-234)||(12380924-12380988)
chr1 (170-234)||(12384991-12385055)
chr1 (168-228)||(24413294-24413354)
chr1 (158-234)||(39426207-39426283)
chr1 (117-227)||(32618805-32618913)
chr1 (176-238)||(44483760-44483822)
chr1 (151-220)||(6948825-6948896)
chr1 (19-67)||(52724313-52724361)
chr1 (151-234)||(30077639-30077722)
chr1 (151-220)||(18107316-18107386)
chr1 (115-181)||(30860728-30860794)
chr1 (108-204)||(27982079-27982174)
chr1 (168-228)||(32887792-32887852)
[»] chr8 (24 HSPs)
chr8 (110-238)||(28069712-28069840)
chr8 (115-234)||(30426628-30426747)
chr8 (115-232)||(36991355-36991472)
chr8 (115-234)||(10672473-10672590)
chr8 (113-238)||(44859126-44859249)
chr8 (115-233)||(10652576-10652694)
chr8 (115-234)||(40695207-40695325)
chr8 (120-234)||(41511259-41511373)
chr8 (117-238)||(45113263-45113385)
chr8 (112-234)||(6014191-6014314)
chr8 (117-200)||(37966405-37966487)
chr8 (115-173)||(5033310-5033368)
chr8 (150-238)||(24102009-24102097)
chr8 (151-234)||(26749543-26749626)
chr8 (115-234)||(28318855-28318980)
chr8 (150-201)||(12177575-12177626)
chr8 (150-201)||(12422003-12422054)
chr8 (168-206)||(5033109-5033147)
chr8 (151-220)||(17867654-17867724)
chr8 (158-228)||(36748494-36748563)
chr8 (161-233)||(34612562-34612634)
chr8 (124-227)||(18689495-18689597)
chr8 (151-234)||(1937149-1937233)
chr8 (176-220)||(11090512-11090556)
[»] chr7 (28 HSPs)
chr7 (115-238)||(9559013-9559136)
chr7 (110-235)||(4888463-4888588)
chr7 (115-238)||(18198249-18198372)
chr7 (115-234)||(21151149-21151268)
chr7 (115-234)||(45260386-45260505)
chr7 (115-234)||(12139323-12139443)
chr7 (115-234)||(16366515-16366634)
chr7 (115-234)||(47226035-47226152)
chr7 (110-234)||(44647959-44648085)
chr7 (120-238)||(25084690-25084810)
chr7 (123-234)||(7362565-7362676)
chr7 (117-238)||(33450499-33450621)
chr7 (120-238)||(989122-989239)
chr7 (117-238)||(47500243-47500365)
chr7 (113-189)||(47271105-47271180)
chr7 (152-238)||(32915949-32916035)
chr7 (120-228)||(29631051-29631156)
chr7 (120-238)||(34985909-34986028)
chr7 (151-234)||(47799895-47799978)
chr7 (158-220)||(19027685-19027748)
chr7 (158-220)||(20726888-20726951)
chr7 (152-226)||(7373872-7373946)
chr7 (151-220)||(14696752-14696822)
chr7 (161-217)||(46802336-46802392)
chr7 (151-220)||(30102504-30102574)
chr7 (117-238)||(7712329-7712449)
chr7 (124-181)||(33608845-33608901)
chr7 (151-195)||(35737149-35737193)
[»] chr5 (26 HSPs)
chr5 (115-238)||(18625380-18625503)
chr5 (115-234)||(35660568-35660687)
chr5 (110-234)||(37266728-37266852)
chr5 (115-238)||(13032111-13032234)
chr5 (112-234)||(11775790-11775912)
chr5 (115-234)||(32129576-32129695)
chr5 (120-234)||(4895699-4895813)
chr5 (110-234)||(14349800-14349924)
chr5 (110-234)||(40753116-40753240)
chr5 (115-234)||(34827189-34827308)
chr5 (115-234)||(39902412-39902531)
chr5 (117-227)||(29340999-29341108)
chr5 (128-234)||(8440943-8441049)
chr5 (151-234)||(36290599-36290682)
chr5 (115-226)||(43309113-43309224)
chr5 (173-234)||(4592797-4592858)
chr5 (168-228)||(43222129-43222189)
chr5 (119-206)||(18653386-18653472)
chr5 (136-206)||(3057135-3057204)
chr5 (152-206)||(27428877-27428931)
chr5 (117-227)||(31546490-31546599)
chr5 (117-234)||(32793371-32793487)
chr5 (141-201)||(1475640-1475700)
chr5 (151-234)||(41660103-41660186)
chr5 (117-194)||(10242889-10242965)
chr5 (151-238)||(3041302-3041390)
[»] chr3 (21 HSPs)
chr3 (115-234)||(19830390-19830509)
chr3 (115-234)||(27033648-27033767)
chr3 (115-234)||(34373828-34373947)
chr3 (115-238)||(43719906-43720029)
chr3 (115-234)||(2229980-2230099)
chr3 (114-234)||(46167390-46167510)
chr3 (115-215)||(24754673-24754773)
chr3 (115-215)||(24763670-24763770)
chr3 (115-220)||(40851785-40851890)
chr3 (130-234)||(34373559-34373663)
chr3 (117-238)||(48084812-48084934)
chr3 (129-234)||(550790-550894)
chr3 (151-234)||(31523663-31523746)
chr3 (136-234)||(12402963-12403061)
chr3 (115-164)||(24647905-24647954)
chr3 (128-234)||(566746-566852)
chr3 (151-234)||(42613077-42613160)
chr3 (151-234)||(49679265-49679348)
chr3 (117-204)||(33632849-33632935)
chr3 (118-204)||(28229365-28229450)
chr3 (158-238)||(40810357-40810438)
[»] chr6 (26 HSPs)
chr6 (115-234)||(4804445-4804564)
chr6 (110-234)||(21159323-21159447)
chr6 (115-238)||(13089708-13089831)
chr6 (112-238)||(27826531-27826657)
chr6 (117-234)||(12412634-12412751)
chr6 (115-234)||(17944159-17944278)
chr6 (115-234)||(1249107-1249224)
chr6 (115-234)||(7162081-7162200)
chr6 (114-234)||(227521-227642)
chr6 (115-193)||(32737895-32737973)
chr6 (117-201)||(1516168-1516251)
chr6 (117-201)||(1518257-1518340)
chr6 (174-234)||(29698160-29698220)
chr6 (151-234)||(24484876-24484959)
chr6 (117-234)||(13888483-13888601)
chr6 (119-234)||(2800574-2800689)
chr6 (151-234)||(2142288-2142371)
chr6 (120-227)||(7215816-7215923)
chr6 (117-191)||(1515503-1515576)
chr6 (158-238)||(32254033-32254113)
chr6 (151-220)||(7098190-7098260)
chr6 (151-220)||(7545648-7545718)
chr6 (124-181)||(28696624-28696680)
chr6 (168-204)||(20228516-20228552)
chr6 (168-204)||(22122500-22122536)
chr6 (124-180)||(30460875-30460930)
[»] chr4 (41 HSPs)
chr4 (115-234)||(19901877-19901996)
chr4 (115-234)||(56558276-56558395)
chr4 (115-234)||(34778418-34778537)
chr4 (115-244)||(33247089-33247218)
chr4 (115-234)||(3952129-3952248)
chr4 (115-234)||(5416425-5416543)
chr4 (115-234)||(5763121-5763240)
chr4 (115-241)||(12312434-12312561)
chr4 (115-234)||(23610639-23610758)
chr4 (115-230)||(24073617-24073732)
chr4 (115-234)||(18206999-18207118)
chr4 (115-234)||(33262511-33262630)
chr4 (124-234)||(30567898-30568008)
chr4 (115-234)||(38079679-38079798)
chr4 (115-201)||(12153184-12153270)
chr4 (117-234)||(47922327-47922445)
chr4 (115-204)||(52018790-52018879)
chr4 (115-234)||(39862514-39862633)
chr4 (117-227)||(23474115-23474224)
chr4 (115-180)||(33524313-33524378)
chr4 (151-233)||(56269071-56269153)
chr4 (152-234)||(56453816-56453898)
chr4 (121-228)||(34927488-34927596)
chr4 (151-234)||(5524444-5524527)
chr4 (129-238)||(47922052-47922157)
chr4 (151-233)||(1015849-1015931)
chr4 (151-228)||(36688183-36688260)
chr4 (151-234)||(37002246-37002329)
chr4 (151-234)||(42010114-42010197)
chr4 (151-201)||(5361456-5361506)
chr4 (188-234)||(12241440-12241486)
chr4 (151-220)||(17493013-17493083)
chr4 (172-234)||(25442190-25442252)
chr4 (151-220)||(32146513-32146583)
chr4 (151-220)||(46238977-46239047)
chr4 (151-220)||(53526099-53526169)
chr4 (151-220)||(55160365-55160435)
chr4 (158-220)||(25219006-25219070)
chr4 (141-200)||(26428999-26429059)
chr4 (182-234)||(31862246-31862298)
chr4 (168-228)||(38865280-38865340)
[»] scaffold0012 (1 HSPs)
scaffold0012 (115-234)||(208060-208179)
[»] scaffold0035 (1 HSPs)
scaffold0035 (110-238)||(16351-16479)
[»] scaffold0008 (1 HSPs)
scaffold0008 (115-231)||(9160-9276)
[»] scaffold0250 (1 HSPs)
scaffold0250 (115-238)||(7140-7267)
[»] scaffold0006 (1 HSPs)
scaffold0006 (116-195)||(73817-73896)
[»] scaffold0456 (1 HSPs)
scaffold0456 (115-201)||(13709-13796)
[»] scaffold0009 (1 HSPs)
scaffold0009 (117-234)||(6396-6513)
[»] scaffold0126 (1 HSPs)
scaffold0126 (117-206)||(22404-22492)
[»] scaffold0664 (1 HSPs)
scaffold0664 (151-220)||(4695-4765)
[»] scaffold0171 (1 HSPs)
scaffold0171 (161-234)||(17311-17384)
[»] scaffold0062 (1 HSPs)
scaffold0062 (124-227)||(58684-58786)


Alignment Details
Target: chr2 (Bit Score: 99; Significance: 6e-49; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 112 - 238
Target Start/End: Complemental strand, 13238800 - 13238674
Alignment:
Q  112 ggatgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatc 211  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||| | ||    
T  13238800 ggatgaagatcctctccatttggcaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccaccaagtgggtc 13238701  T
Q  212 ccaccatcagtaattatattttatttt 238  Q
    ||||||||| |||||||||||||||||    
T  13238700 ccaccatcattaattatattttatttt 13238674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 35316941 - 35316822
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| | |||||    
T  35316941 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtggatcctaccactaagtgggtccca 35316842  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  35316841 ccatcattaattatatttta 35316822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 23259441 - 23259565
Alignment:
Q  110 tgggatgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtaga 209  Q
    |||| ||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||||| | ||||| ||    
T  23259441 tggggtgaagatcctctccatttggcaaaataaatggtgttttgcaagttggagagagatagacacaaaaaatagctggtgggtcctactactaagtgga 23259540  T
Q  210 tcccaccatcagtaattatatttta 234  Q
    ||||||||||| |||||||||||||    
T  23259541 tcccaccatcattaattatatttta 23259565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 28565008 - 28564889
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||||||||| |||||||| |||  |||||| ||||| ||||||||||||||||||||||||||||||||| ||||| | |||||    
T  28565008 tgaagatcctctccatttggcaaaataaatggagttttttaagttgtagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtccca 28564909  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  28564908 ccatcattaattatatttta 28564889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 45625038 - 45625124
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccat 201  Q
    ||||||||||||||||||||||||| |||||||| ||| ||||||||||||| |||||||||| ||||| || |||||||| |||||    
T  45625038 tgaagatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacaagaaataaattgtgggtcccaccat 45625124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 11864985 - 11864913
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatg 187  Q
    ||||||||||||||||||  ||||| |||||||| ||| ||||||||||||| ||||||||||||||||||||    
T  11864985 tgaagatcctctccatttatcaaaataaatggagttttacaagttggagagagatagacacaaaaaatagatg 11864913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 231
Target Start/End: Complemental strand, 2063467 - 2063353
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatgg-tgggtcctaccattaagtagatcccac 215  Q
    |||||||||| |||||| ||||| |||| ||| ||||||| ||||||||| ||||||||||||||||||||| | ||||||||||  |||| | | ||||    
T  2063467 aagatcctcttcatttgacaaaataaatagag-tttgcaatttggagagagatagacacaaaaaatagatggtttggtcctaccaccaagtgggttccac 2063369  T
Q  216 catcagtaattatatt 231  Q
    ||||| |||| |||||    
T  2063368 catcattaataatatt 2063353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 30709183 - 30709115
Alignment:
Q  158 ttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaatt 226  Q
    ||||||||| ||||||||| |||||||||  |||||||||||| ||||| ||||||||||||| |||||    
T  30709183 ttggagagagatagacacataaaatagatattgggtcctaccactaagtggatcccaccatcattaatt 30709115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 36929823 - 36929720
Alignment:
Q  123 ctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagt 222  Q
    |||||||||| |||||| |||||||| | ||||| ||||||||| ||||||||| ||||||| | ||| ||||||||||||| | ||| || |||||| |    
T  36929823 ctctccatttagcaaaataaatggag-tatgcaatttggagagagatagacacataaaataggtagtgtgtcctaccattaaatggattccgccatcatt 36929725  T
Q  223 aatta 227  Q
    |||||    
T  36929724 aatta 36929720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 375073 - 374990
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||||| ||||||||| ||||||||||||||||  ||||||||||||  | ||||| | ||||||||||| ||||||| |||||    
T  375073 ttgcaatttggagagagatagacacaaaaaataagtggtgggtcctattactaagtgggtcccaccatcattaattatttttta 374990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 8988935 - 8988848
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatattttatttt 238  Q
    |||||| ||||||||| ||||||||||||||||  || | ||||||| || ||||| | ||||||||||| ||||||| |||||||||    
T  8988935 ttgcaatttggagagagatagacacaaaaaataagtgataggtcctatcactaagtgggtcccaccatcattaattattttttatttt 8988848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 40640783 - 40640706
Alignment:
Q  118 agatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaa-aatagatggtgggtc 194  Q
    ||||||||||||||||  |||| |||||||| ||||||| ||||||||| ||| | |||||| |||||||||||||||    
T  40640783 agatcctctccatttgttaaaataaatggagttttgcaatttggagagagatatatacaaaagaatagatggtgggtc 40640706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 23459841 - 23459924
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||||| ||||||||| ||||||||||||||||  ||| |||||||| || ||| | | ||||||||||| ||||||| |||||    
T  23459841 ttgcaatttggagagagatagacacaaaaaataagtggcgggtcctatcactaaatgggtcccaccatcattaattatttttta 23459924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 238
Target Start/End: Original strand, 30857642 - 30857760
Alignment:
Q  119 gatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccat 218  Q
    ||||||||||||||  ||||| |||||||| | || || ||| |||||  ||||||||||||||||||  ||| |||||| ||||| | |||| ||||||    
T  30857642 gatcctctccatttcacaaaataaatggag-tatgtaatttgaagagaggtagacacaaaaaatagataatggatcctactattaaatggatcacaccat 30857740  T
Q  219 cagtaattatattttatttt 238  Q
    || ||||||| || ||||||    
T  30857741 cattaattattttatatttt 30857760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 13780579 - 13780509
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaa-tagatggtgggtcctaccattaagtagatcccaccatca 220  Q
    |||||| ||||||||| |||||||||||||| ||  |||||||||||| || ||||| |||||||||||||    
T  13780579 ttgcaatttggagagagatagacacaaaaaaataagtggtgggtcctatcactaagtggatcccaccatca 13780509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 234
Target Start/End: Original strand, 21454476 - 21454572
Alignment:
Q  136 aaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||| |||||||| |||| || || |||||| ||||||||||||| ||||| ||||||| ||||||||||| | | ||||||||| ||||||| |||||    
T  21454476 aaaataaatggag-tttgtaatttagagagagatagacacaaaaa-tagattgtgggtcataccattaagtgggttccaccatcattaattatttttta 21454572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 234
Target Start/End: Complemental strand, 19908892 - 19908777
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccacc 216  Q
    |||||||||| ||||||  | || |||||||| | ||||| |||||| || ||||||||| ||||||||| ||| |||||||  |||||| | |||||||    
T  19908892 aagatcctcttcatttgatataataaatggag-tatgcaatttggag-gagatagacacataaaatagatagtgagtcctacttttaagtgggtcccacc 19908795  T
Q  217 atcagtaattatatttta 234  Q
    |||| ||||||| |||||    
T  19908794 atcattaattatttttta 19908777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 35315615 - 35315527
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagt 206  Q
    ||||||||||||||||   |||| ||||||| |  ||||| ||||||||| ||| ||||||| ||||| |||||||||||| ||||||||    
T  35315615 aagatcctctccatttataaaaataaatgga-agatgcaatttggagagagataaacacaaacaataggtggtgggtcctatcattaagt 35315527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 15709874 - 15709772
Alignment:
Q  124 tctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagta 223  Q
    |||| |||| |||||| ||||||| || ||||| ||||||||| ||| ||| | ||||||||| |||| |||||||||||||| | | ||| ||||| ||    
T  15709874 tctcgatttagcaaaataaatgga-atatgcaatttggagagagataaacatataaaatagatagtggatcctaccattaagtgggttccatcatcatta 15709776  T
Q  224 atta 227  Q
    ||||    
T  15709775 atta 15709772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 227
Target Start/End: Complemental strand, 38397194 - 38397085
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccacc 216  Q
    |||||||||||||||| | | || ||| |||| | ||||| ||| ||||| ||||||| | ||||||||| |||||| |||| |||||||   |||||||    
T  38397194 aagatcctctccattttgtataataaacggag-tatgcaatttgaagagagatagacaaataaaatagatagtgggtgctactattaagtgagtcccacc 38397096  T
Q  217 atcagtaatta 227  Q
    |||| ||||||    
T  38397095 atcaataatta 38397085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 40254144 - 40254214
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaa-aatagatggtgggtcctaccattaagtagatcccaccatca 220  Q
    |||||| |||| |||| |||||||||||| ||||  |||||||||||| || ||||| |||||||||||||    
T  40254144 ttgcaatttggggagagatagacacaaaataataagtggtgggtcctatcactaagtggatcccaccatca 40254214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 234
Target Start/End: Original strand, 36758823 - 36758939
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccacc 216  Q
    ||||||||||||||||   |||| ||||||| | |||||| ||||||||| ||||||||||||| ||  |||||| ||||| | ||| || | | ||||     
T  36758823 aagatcctctccatttataaaaataaatgga-agttgcaatttggagagagatagacacaaaaagtaagtggtggatcctatctttaggtgggttccaca 36758921  T
Q  217 atcagtaattatatttta 234  Q
    |||| ||||||| |||||    
T  36758922 atcattaattatttttta 36758939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 4446860 - 4446940
Alignment:
Q  120 atcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctacca 200  Q
    ||||||||||||||  |||| |||||||  | | ||| ||| ||||| ||||||||| ||||||||| |||| ||||||||    
T  4446860 atcctctccatttgataaaataaatggaagtgtacaatttgaagagagatagacacataaaatagatagtggatcctacca 4446940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 109 - 238
Target Start/End: Original strand, 50294016 - 50294145
Alignment:
Q  109 gtgggatgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtag 208  Q
    ||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |    
T  50294016 gtggggtgaagatcctcttcatttggcaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgg 50294115  T
Q  209 atcccaccatcagtaattatattttatttt 238  Q
    |||| ||||||| |||||||||||||||||    
T  50294116 atcctaccatcattaattatattttatttt 50294145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 110 - 238
Target Start/End: Original strand, 48327108 - 48327235
Alignment:
Q  110 tgggatgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtaga 209  Q
    |||| |||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| ||||| |     
T  48327108 tggggtgaagatcatctccatttggcaaaataaatggagatttgcaagttggagagagatagacaaaaaaaatagatggtgagtcctaccactaagtggg 48327207  T
Q  210 tcccaccatcagtaattatattttatttt 238  Q
    | ||||||||| |||||||||||||||||    
T  48327208 t-ccaccatcattaattatattttatttt 48327235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 50484502 - 50484383
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| | |||| ||||| | |||||    
T  50484502 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtacaaccactaagtgggtccca 50484403  T
Q  215 ccatcagtaattatatttta 234  Q
    || ||| |||||||||||||    
T  50484402 ccgtcattaattatatttta 50484383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 12151883 - 12151764
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    |||||||| |||||||||||||||| |||||||| ||||| ||||||||||| | ||||||||||||||||| ||||||||||||| ||||| | |||||    
T  12151883 tgaagatcttctccatttggcaaaataaatggagttttgccagttggagagagaaagacacaaaaaatagattgtgggtcctaccactaagtgggtccca 12151784  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  12151783 ccatcattaattatatttta 12151764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 115 - 238
Target Start/End: Original strand, 23861911 - 23862037
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgg---gtcctaccattaagtagatc 211  Q
    |||| |||||||| |||| |||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||    |||||||| ||||| ||||    
T  23861911 tgaatatcctctctatttagcaaaataaatgaagttttgcaagttggagagagatagacacaaaaaatagatggtggtgaatcctaccactaagtggatc 23862010  T
Q  212 ccaccatcagtaattatattttatttt 238  Q
    ||||||||| |||||||||||||||||    
T  23862011 ccaccatcattaattatattttatttt 23862037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 12380836 - 12380907
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagat 186  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||    
T  12380836 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 12380907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 12384903 - 12384974
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagat 186  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||    
T  12384903 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 12384974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 234
Target Start/End: Complemental strand, 40328390 - 40328275
Alignment:
Q  116 gaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccac 215  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||  |||||||| ||||||||||||||||||| |||| ||||| | | ||||    
T  40328390 gaagatcctctccatttggcaaaataaatggagttttgcaaattggagag--atagacac-aaaaatagatggtgggtcccaccactaagtgggttccac 40328294  T
Q  216 catcagtaattatatttta 234  Q
    ||||| || ||||||||||    
T  40328293 catcattagttatatttta 40328275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 117 - 238
Target Start/End: Original strand, 18976265 - 18976386
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaa-aatagatggtgggtcctaccattaagtagatcccac 215  Q
    |||||||||||||||||  |||| |||| ||| ||||||| ||||||||| |||||||||||| |||||||||||| ||| |||||||||||| |||||     
T  18976265 aagatcctctccatttgctaaaataaattgagttttgcaatttggagagagatagacacaaaagaatagatggtggatccaaccattaagtaggtcccat 18976364  T
Q  216 catcagtaattatattttatttt 238  Q
    ||||| ||||||| |||||||||    
T  18976365 catcattaattat-ttttatttt 18976386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 205
Target Start/End: Original strand, 7840638 - 7840728
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaag 205  Q
    |||||||||| | ||||||||| || |||||||| |||| |||||||||||| |||||||||| ||||||||| |||||||||||||||||    
T  7840638 tgaagatcctattcatttggcagaataaatggagttttgtaagttggagagagatagacacaagaaatagatgatgggtcctaccattaag 7840728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 195
Target Start/End: Complemental strand, 45978121 - 45978041
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcc 195  Q
    ||||||||||||| |||||  |||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||    
T  45978121 tgaagatcctctctatttgataaaataaatggagttttgcaagttggagagagatagatacaaaaaatagatggtgggtcc 45978041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 226
Target Start/End: Original strand, 32361266 - 32361377
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    |||| |||||||||||||||  ||| || | ||| |||| |||||||||||| || ||||||||| ||||||||||| |||||| | ||||||| |||||    
T  32361266 tgaaaatcctctccatttggtgaaataattagagttttgtaagttggagagagatggacacaaaagatagatggtggatcctactactaagtaggtccca 32361365  T
Q  215 ccatcagtaatt 226  Q
     ||||| |||||    
T  32361366 tcatcattaatt 32361377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 52280034 - 52280117
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||||| ||||||||| ||||||| ||||||||  |||||||||||| || ||||| ||||||||||||| ||||||| |||||    
T  52280034 ttgcaatttggagagagatagacataaaaaataagtggtgggtcctatcactaagtggatcccaccatcattaattatttttta 52280117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 24977310 - 24977233
Alignment:
Q  161 gagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatattttatttt 238  Q
    |||||| |||||||||||||||||||||||| |||||||| ||||| | | |||| |||| || ||||||||||||||    
T  24977310 gagagagatagacacaaaaaatagatggtggatcctaccactaagtgggttccacaatcattagttatattttatttt 24977233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 12380924 - 12380988
Alignment:
Q  170 agacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||||||||||||||||||||||| |||||| |||||   ||||||||||| |||||||||||||    
T  12380924 agacacaaaaaatagatggtgggttctaccactaagtgagtcccaccatcattaattatatttta 12380988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 12384991 - 12385055
Alignment:
Q  170 agacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||||||||||||||||||||||| |||||| |||||   ||||||||||| |||||||||||||    
T  12384991 agacacaaaaaatagatggtgggttctaccactaagtgagtcccaccatcattaattatatttta 12385055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 24413294 - 24413354
Alignment:
Q  168 atagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattat 228  Q
    ||||||||||||||| |||||||||||||| |||||| | | ||||||||||| |||||||    
T  24413294 atagacacaaaaaatggatggtgggtcctatcattaaatgggtcccaccatcattaattat 24413354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 39426283 - 39426207
Alignment:
Q  158 ttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    ||||||||| ||||||||| ||||||||| ||||||||||||| ||| | | |||||| |||| ||||||| |||||    
T  39426283 ttggagagagatagacacataaaatagatagtgggtcctaccactaattgggtcccactatcattaattatttttta 39426207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 227
Target Start/End: Complemental strand, 32618913 - 32618805
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccacc 216  Q
    |||||||||| ||||||||| || |||||||| | | ||| ||||||||| || |||| | ||| ||||| |||| |||||| ||||||||| |||||||    
T  32618913 aagatcctcttcatttggcataataaatggag-tatccaatttggagagagatggacatataaa-tagatagtggatcctactattaagtaggtcccacc 32618816  T
Q  217 atcagtaatta 227  Q
    |||| ||||||    
T  32618815 atcattaatta 32618805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 44483822 - 44483760
Alignment:
Q  176 aaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatattttatttt 238  Q
    |||||| |||| ||||||||||||||||| | ||| ||||||||| ||||||| |||||||||    
T  44483822 aaaaaaaagattgtgggtcctaccattaaatggattccaccatcattaattattttttatttt 44483760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 6948825 - 6948896
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaataga--tggtgggtcctaccattaagtagatcccaccatca 220  Q
    |||||| ||||||||| ||||||| |||||||| |  |||||||||||| || ||||| |||||||||||||    
T  6948825 ttgcaatttggagagagatagacaaaaaaaatataagtggtgggtcctatcactaagtggatcccaccatca 6948896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 52724313 - 52724361
Alignment:
Q  19 gaccaaatgtagcgtttactatttaggcacatacaaaaagacatttatc 67  Q
    |||||||| ||| ||||||| |||||||||||||||||||||| |||||    
T  52724313 gaccaaatctagtgtttactctttaggcacatacaaaaagacacttatc 52724361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 30077639 - 30077722
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||||| ||||||||| ||||||||||||||||  |||||||| ||| || |||||   |||||| |||| ||||||| |||||    
T  30077639 ttgcaatttggagagagatagacacaaaaaataagtggtgggttctatcactaagtgagtcccactatcattaattatttttta 30077722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 18107316 - 18107386
Alignment:
Q  151 ttgcaagttggagagaaatagacac-aaaaaatagatggtgggtcctaccattaagtagatcccaccatca 220  Q
    |||||| ||||||||| |||||||| ||||||||  |||||||||||| || ||| | |||||||||||||    
T  18107316 ttgcaatttggagagagatagacacaaaaaaataagtggtgggtcctatcactaaatggatcccaccatca 18107386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 30860728 - 30860794
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaa 181  Q
    |||||||| ||  ||||| ||||||  ||||||| ||||||||||||||||| ||||||| ||||||    
T  30860728 tgaagatcttcatcatttagcaaaatgaatggagttttgcaagttggagagatatagacataaaaaa 30860794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 204
Target Start/End: Complemental strand, 27982174 - 27982079
Alignment:
Q  108 cgtgggatgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaa 204  Q
    |||||| | ||||||||||||||||   |||| ||||||| |  ||||| ||||||||| ||||||| |||||||| ||| ||||||| | ||||||    
T  27982174 cgtggggttaagatcctctccatttataaaaataaatgga-agatgcaatttggagagatatagacataaaaaatatatgttgggtcccatcattaa 27982079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 32887792 - 32887852
Alignment:
Q  168 atagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattat 228  Q
    ||||||||| |||||| || |||| |||||||||||| | | ||||||||||| |||||||    
T  32887792 atagacacataaaataaatagtggatcctaccattaaatgggtcccaccatcattaattat 32887852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 110 - 238
Target Start/End: Complemental strand, 28069840 - 28069712
Alignment:
Q  110 tgggatgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtaga 209  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| |     
T  28069840 tggggtgaagatcctctccatttggcaaaataaatggagatttgcaagttggagagagaaagacacaaaaaatagatggtgggtcctaccactaagtggg 28069741  T
Q  210 tcccaccatcagtaattatattttatttt 238  Q
    ||||||||||| |||||||||||||||||    
T  28069740 tcccaccatcattaattatattttatttt 28069712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 30426628 - 30426747
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    |||||| |||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| | |||||    
T  30426628 tgaagaccctctccatttggcaaaataaatggtgttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtccca 30426727  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  30426728 ccatcattaattatatttta 30426747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 115 - 232
Target Start/End: Complemental strand, 36991472 - 36991355
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| || ||||||||| |||||||||||| ||||| | |||||    
T  36991472 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacataagaaatagatgatgggtcctaccactaagtgggtccca 36991373  T
Q  215 ccatcagtaattatattt 232  Q
    |||||| |||||||||||    
T  36991372 ccatcattaattatattt 36991355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 10672473 - 10672590
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||| ||||||||||||||||| |||||||| |||||||||||||||||  ||||||||||||||||||||||| |||||||| |||||   |||||    
T  10672473 tgaagattctctccatttggcaaaataaatggagttttgcaagttggagaga--tagacacaaaaaatagatggtggatcctaccactaagtgagtccca 10672570  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  10672571 ccatcattaattatatttta 10672590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 113 - 238
Target Start/End: Original strand, 44859126 - 44859249
Alignment:
Q  113 gatgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcc 212  Q
    ||||||||||||||| ||||| ||||| |||||||| |||||||||| |||||| ||||||   ||||||||||||||||| |||||| ||||| | |||    
T  44859126 gatgaagatcctctctatttgacaaaataaatggagttttgcaagttagagagagatagact--aaaaatagatggtgggttctaccactaagtgggtcc 44859223  T
Q  213 caccatcagtaattatattttatttt 238  Q
    |||||||| |||||||||||||||||    
T  44859224 caccatcattaattatattttatttt 44859249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 115 - 233
Target Start/End: Original strand, 10652576 - 10652694
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    |||||||||||||||||||| |||| |||||| | ||||||||||||||||| ||||| ||||||||| ||||||||||| ||| | ||| | | |||||    
T  10652576 tgaagatcctctccatttggtaaaataaatggtgttttgcaagttggagagagatagatacaaaaaattgatggtgggtcatactactaattgggtccca 10652675  T
Q  215 ccatcagtaattatatttt 233  Q
    |||||| ||||||||||||    
T  10652676 ccatcattaattatatttt 10652694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 40695207 - 40695325
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    |||||||| ||||||||| |||||| |||||||| |||| |||||||||||| |||||||||||||||||||||| |||||||||| |||||   | |||    
T  40695207 tgaagatcttctccatttagcaaaataaatggag-tttggaagttggagagagatagacacaaaaaatagatggtaggtcctaccactaagtgagttcca 40695305  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| || ||||||||||    
T  40695306 ccatcattagttatatttta 40695325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 41511373 - 41511259
Alignment:
Q  120 atcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatc 219  Q
    ||||||||| |||  ||||| |||||||| ||||||||||||| ||| ||||| | ||||||||||| |||||||||| || ||||| | | ||||||||    
T  41511373 atcctctccgtttaacaaaataaatggagttttgcaagttggaaagagatagatataaaaaatagatagtgggtcctatcactaagtggtttccaccatc 41511274  T
Q  220 agtaattatatttta 234  Q
    | |||||||||||||    
T  41511273 attaattatatttta 41511259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 238
Target Start/End: Complemental strand, 45113385 - 45113263
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaa-aatagatggtgggtcctaccattaagtagatcccac 215  Q
    |||||||||||||||||  |||| |||| | | ||||||| ||||||||| |||||||||||| |||||||||||||||| |||| |||||   |||||     
T  45113385 aagatcctctccatttgctaaaataaattgtgttttgcaatttggagagacatagacacaaaagaatagatggtgggtccaaccactaagtgtgtcccat 45113286  T
Q  216 catcagtaattatattttatttt 238  Q
    ||||| ||||||| |||||||||    
T  45113285 catcattaattattttttatttt 45113263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 6014314 - 6014191
Alignment:
Q  112 ggatgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaa-aatagatggtgggtcctaccattaagtagat 210  Q
    |||| |||||||||||||||||  |||| |||| ||| ||||||| ||||||| | |||||||||||| |||||||| | |||||||||||||||| |||    
T  6014314 ggattaagatcctctccatttgctaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtggat 6014215  T
Q  211 cccaccatcagtaattatatttta 234  Q
    || |  |||| ||||||| |||||    
T  6014214 cctattatcattaattatgtttta 6014191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 37966405 - 37966487
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctacca 200  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||| ||||| ||| ||||||||||||||| || ||||||||||    
T  37966405 aagatcctctccatttggcaaaataaatgga-atttgcaatttgaagagagataaacacaaaaaatagattgtaggtcctacca 37966487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 5033368 - 5033310
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagac 173  Q
    |||||||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  5033368 tgaagatcctttccatttggcaaaataaatggagttttgcaagttggagagagatagac 5033310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 24102097 - 24102009
Alignment:
Q  150 tttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatattttatttt 238  Q
    ||||||||||  ||||| ||||||| |||||||||||||||| |||||||| |||||   | ||||||||| ||||||||||| |||||    
T  24102097 tttgcaagtttaagagagatagacataaaaaatagatggtggatcctaccactaagtgagttccaccatcattaattatatttcatttt 24102009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 26749543 - 26749626
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||||| ||||||||| ||||||||||||||||  || ||||||||| || ||||| | ||||||||||| ||||||| |||||    
T  26749543 ttgcaatttggagagagatagacacaaaaaataagtgatgggtcctatcactaagtgggtcccaccatcattaattatttttta 26749626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 28318855 - 28318980
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaata------gatggtgggtcctaccattaagtag 208  Q
    |||||||| |||  |||||| |||| |||||||| |||||||||| |||||| ||| ||| ||||||||      ||| ||||||||||||| ||||| |    
T  28318855 tgaagatcttctttatttggtaaaataaatggagttttgcaagtttgagagagatatacaaaaaaaataaaaaaagatagtgggtcctaccactaagtgg 28318954  T
Q  209 atcccaccatcagtaattatatttta 234  Q
     ||| ||||||| |||||||||||||    
T  28318955 gtccaaccatcattaattatatttta 28318980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 12177575 - 12177626
Alignment:
Q  150 tttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccat 201  Q
    ||||||||||||||||| ||||| |||||||||||||||||| ||| |||||    
T  12177575 tttgcaagttggagagagatagatacaaaaaatagatggtggatcccaccat 12177626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 12422003 - 12422054
Alignment:
Q  150 tttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccat 201  Q
    ||||||||||||||||| ||||| |||||||||||||||||| ||| |||||    
T  12422003 tttgcaagttggagagagatagatacaaaaaatagatggtggatcccaccat 12422054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 5033147 - 5033109
Alignment:
Q  168 atagacacaaaaaatagatggtgggtcctaccattaagt 206  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  5033147 atagacacaaaaaatagatggtgggtcctaccactaagt 5033109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 17867654 - 17867724
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaa-tagatggtgggtcctaccattaagtagatcccaccatca 220  Q
    |||||| ||||||||| |||||||||||||| ||  |||||||||||| || ||||| |||||||||||||    
T  17867654 ttgcaatttggagagagatagacacaaaaaaataagtggtgggtcctatcactaagtggatcccaccatca 17867724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 36748494 - 36748563
Alignment:
Q  158 ttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattat 228  Q
    ||||||| | ||||||||||||| ||||  | ||||||||||||||||| ||||||||||||| |||||||    
T  36748494 ttggagatagatagacacaaaaa-tagacagcgggtcctaccattaagtggatcccaccatcattaattat 36748563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 34612634 - 34612562
Alignment:
Q  161 gagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttt 233  Q
    |||||| ||||||||||||||||  |||||||||||| || ||||| | || |||||||| ||||||| ||||    
T  34612634 gagagagatagacacaaaaaataagtggtgggtcctatcactaagtgggtctcaccatcattaattatttttt 34612562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 18689597 - 18689495
Alignment:
Q  124 tctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagta 223  Q
    |||| |||| |||||| ||||||| || ||||| ||||||||| ||| ||| | ||||||||| |||| |||||||||||||| | | ||| ||||| ||    
T  18689597 tctcgatttagcaaaataaatgga-atatgcaatttggagagagataaacatataaaatagatagtggatcctaccattaagtgggttccatcatcatta 18689499  T
Q  224 atta 227  Q
    ||||    
T  18689498 atta 18689495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 1937149 - 1937233
Alignment:
Q  151 ttgcaagttggagagaaatagacac-aaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||||| ||||||||| |||||||| |||||| |  |||||||||||| || ||||  | ||||||||||| ||||||| |||||    
T  1937149 ttgcaatttggagagagatagacacaaaaaaacaagtggtgggtcctatcactaagcgggtcccaccatcattaattatttttta 1937233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 11090556 - 11090512
Alignment:
Q  176 aaaaaatagatggtgggtcctaccattaagtagatcccaccatca 220  Q
    ||||||||  |||||||||||| |||||||| |||||||||||||    
T  11090556 aaaaaataagtggtgggtcctatcattaagtggatcccaccatca 11090512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 115 - 238
Target Start/End: Original strand, 9559013 - 9559136
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| | |||||    
T  9559013 tgaagatcctctccatttggcaaaataaatggagatttgcaagttggagagagatagatacaaaaaatagatggtgggtcctaccactaagtgggtccca 9559112  T
Q  215 ccatcagtaattatattttatttt 238  Q
    |||||| |||||||||||||||||    
T  9559113 ccatcattaattatattttatttt 9559136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 110 - 235
Target Start/End: Complemental strand, 4888588 - 4888463
Alignment:
Q  110 tgggatgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtaga 209  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||     
T  4888588 tggggtgaagatcctctccatttgacaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagatagtgggtcctaccactaagtagg 4888489  T
Q  210 tcccaccatcagtaattatattttat 235  Q
    ||||||||||| ||||||||||||||    
T  4888488 tcccaccatcattaattatattttat 4888463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 18198372 - 18198249
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||||||||| |||||||| ||||||| ||||||| |||||||||||||||||||||||||||| || ||| |||||   |||||    
T  18198372 tgaagatcctctccatttggcaaaataaatggagttttgcaaattggagataaatagacacaaaaaatagatggtgggttctgccactaagtgagtccca 18198273  T
Q  215 ccatcagtaattatattttatttt 238  Q
    |||||| |||||||||||||||||    
T  18198272 ccatcattaattatattttatttt 18198249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 21151268 - 21151149
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| |||||||||| || |||||||| ||||| | |||||    
T  21151268 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggaggatcctaccactaagtgggtccca 21151169  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  21151168 ccatcattaattatatttta 21151149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 45260386 - 45260505
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||||||||||||||| |||| |||||||| ||||| |||||||    
T  45260386 tgaagatcctctccatttggcaaaataaattgagttttgcaagttggagagagatagacacaaaaaatagattgtggatcctaccactaagtggatccca 45260485  T
Q  215 ccatcagtaattatatttta 234  Q
     ||||| |||||||||||||    
T  45260486 tcatcattaattatatttta 45260505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 12139443 - 12139323
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagt-agatccc 213  Q
    ||||||| |||| |||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  | ||||    
T  12139443 tgaagattctcttcatttggcaaaataaatgaagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccattaagtggggtccc 12139344  T
Q  214 accatcagtaattatatttta 234  Q
    ||||||| |||||||||||||    
T  12139343 accatcattaattatatttta 12139323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 16366634 - 16366515
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||| || ||||||||||||| |||||||| |||||   |||||    
T  16366634 tgaagatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacataagaaatagatggtggatcctaccactaagtgtgtccca 16366535  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  16366534 ccatcattaattatatttta 16366515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 47226035 - 47226152
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| |||||||||||  ||||||||||| |||| ||| | | |||||    
T  47226035 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagataaacacaaaaaat--atggtgggtcccaccactaaatgggtccca 47226132  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  47226133 ccatcattaattatatttta 47226152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 44648085 - 44647959
Alignment:
Q  110 tgggatgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtag- 208  Q
    |||| ||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| ||| |||| ||||| |     
T  44648085 tggggtgaagatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtggatccgaccactaagtggg 44647986  T
Q  209 -atcccaccatcagtaattatatttta 234  Q
      |||| |||||| |||||||||||||    
T  44647985 tctccctccatcattaattatatttta 44647959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 120 - 238
Target Start/End: Original strand, 25084690 - 25084810
Alignment:
Q  120 atcctctccatttggcaaaagaaa--tggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccacca 217  Q
    ||||||||||||||| |||| |||  |  || |||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||| | ||||||||    
T  25084690 atcctctccatttggaaaaaaaaaaataaagttttgtaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccacca 25084789  T
Q  218 tcagtaattatattttatttt 238  Q
    ||| |||||||||||||||||    
T  25084790 tcattaattatattttatttt 25084810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 123 - 234
Target Start/End: Complemental strand, 7362676 - 7362565
Alignment:
Q  123 ctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagt 222  Q
    ||||||||||| ||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||||||||| ||||| ||| | | | ||||||||| |    
T  7362676 ctctccatttgacaaaataaatggagttttgcaaattggagagagatagacacaaaaaatagatggtgggtcgtaccactaaatgggttccaccatcatt 7362577  T
Q  223 aattatatttta 234  Q
    ||||||||||||    
T  7362576 aattatatttta 7362565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 117 - 238
Target Start/End: Complemental strand, 33450621 - 33450499
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaa-aatagatggtgggtcctaccattaagtagatcccac 215  Q
    |||||||||||||||||  |||| |||| ||| ||||||| ||||||||| |||||||||||| |||||||||||||||| |||| ||||| | |||||     
T  33450621 aagatcctctccatttgctaaaataaattgagttttgcaatttggagagagatagacacaaaagaatagatggtgggtccaaccactaagtgggtcccat 33450522  T
Q  216 catcagtaattatattttatttt 238  Q
    ||||| ||||||| |||||||||    
T  33450521 catcattaattattttttatttt 33450499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 238
Target Start/End: Complemental strand, 989239 - 989122
Alignment:
Q  120 atcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatc 219  Q
    |||||||||||||| ||||  |||||||| ||||||| ||||||||| |||||||||||||||| || ||||||||||||| ||||||| ||| |||||     
T  989239 atcctctccatttgacaaattaaatggag-tttgcaatttggagagagatagacacaaaaaatatatagtgggtcctaccactaagtaggtccaaccata 989141  T
Q  220 agtaattatattttatttt 238  Q
    | ||||||| || ||||||    
T  989140 attaattattttatatttt 989122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 238
Target Start/End: Original strand, 47500243 - 47500365
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaa-aatagatggtgggtcctaccattaagtagatcccac 215  Q
    ||||||||||||||||   |||| |||| ||| |||| || ||||||||| |||||||||||| |||||||||||||||| |||| ||||| | |||||     
T  47500243 aagatcctctccatttactaaaataaattgagttttgtaatttggagagagatagacacaaaagaatagatggtgggtccaaccactaagtgggtcccat 47500342  T
Q  216 catcagtaattatattttatttt 238  Q
    ||||| ||||||| |||||||||    
T  47500343 catcattaattattttttatttt 47500365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 47271105 - 47271180
Alignment:
Q  113 gatgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggt 189  Q
    |||||||||||||||||||| |||||| |||||||| ||||||| ||||||||| ||||||||||||||| ||||||    
T  47271105 gatgaagatcctctccatttagcaaaataaatggag-tttgcaatttggagagagatagacacaaaaaattgatggt 47271180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 32916035 - 32915949
Alignment:
Q  152 tgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatattttatttt 238  Q
    ||||| ||| ||||| |||||||||||||||| || |||||||||||||||||||   |||||||||||  ||||||||||| ||||    
T  32916035 tgcaatttgaagagagatagacacaaaaaataaatagtgggtcctaccattaagtgagtcccaccatcatgaattatattttttttt 32915949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 228
Target Start/End: Complemental strand, 29631156 - 29631051
Alignment:
Q  120 atcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatc 219  Q
    ||||||||||||||| |||| |||||||| ||||||| ||| |||||  ||||||||||| |||||| |||||||| |||| || |||| |||||| |||    
T  29631156 atcctctccatttggtaaaataaatggag-tttgcaatttgaagaga--tagacacaaaacatagatagtgggtccaaccactatgtaggtcccactatc 29631060  T
Q  220 agtaattat 228  Q
    | |||||||    
T  29631059 attaattat 29631051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 238
Target Start/End: Original strand, 34985909 - 34986028
Alignment:
Q  120 atcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaa-aatagatggtgggtcctaccattaagtagatcccaccat 218  Q
    |||||||| |||||  |||| |||| ||| ||||||| ||||||||| |||||||||||| |||||||||||||||  |||| ||| |   ||||| |||    
T  34985909 atcctctcaatttgctaaaataaattgagttttgcaatttggagagagatagacacaaaagaatagatggtgggtcaaaccactaaatgagtcccatcat 34986008  T
Q  219 cagtaattatattttatttt 238  Q
    || ||||||| |||||||||    
T  34986009 cattaattattttttatttt 34986028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 47799895 - 47799978
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||||| ||||||||| ||||||||||||||||  || ||||||||| || ||||| | ||||||||||| ||||||| |||||    
T  47799895 ttgcaatttggagagagatagacacaaaaaataagtgatgggtcctatcactaagtgggtcccaccatcattaattatttttta 47799978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 19027685 - 19027748
Alignment:
Q  158 ttggagagaaatagacacaaaaaa-tagatggtgggtcctaccattaagtagatcccaccatca 220  Q
    ||||||||| |||||||||||||| || ||||||||||||| || ||||| |||||||||||||    
T  19027685 ttggagagagatagacacaaaaaaataaatggtgggtcctatcactaagtggatcccaccatca 19027748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 20726951 - 20726888
Alignment:
Q  158 ttggagagaaatagacacaaaaaa-tagatggtgggtcctaccattaagtagatcccaccatca 220  Q
    ||||||||| |||||||||||||| || ||||||||||||| || ||||| |||||||||||||    
T  20726951 ttggagagagatagacacaaaaaaataaatggtgggtcctatcactaagtggatcccaccatca 20726888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 7373946 - 7373872
Alignment:
Q  152 tgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaatt 226  Q
    ||||| ||||||||| ||||  ||||||||||||  ||||||| ||| |||||||||||||||| |||| |||||    
T  7373946 tgcaatttggagagagataggtacaaaaaatagacagtgggtcttactattaagtagatcccactatcattaatt 7373872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 14696752 - 14696822
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaa-tagatggtgggtcctaccattaagtagatcccaccatca 220  Q
    |||||| ||||||||| |||||||||||||| ||  |||||||||||| || ||||| |||||||||||||    
T  14696752 ttgcaatttggagagagatagacacaaaaaaataagtggtgggtcctatcactaagtggatcccaccatca 14696822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 46802336 - 46802392
Alignment:
Q  161 gagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccacca 217  Q
    |||||| ||||||| |||||||||| |||||||||||||| ||||| | ||||||||    
T  46802336 gagagagatagacataaaaaatagacggtgggtcctaccactaagtgggtcccacca 46802392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 30102574 - 30102504
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaa-tagatggtgggtcctaccattaagtagatcccaccatca 220  Q
    |||||| ||||||||| ||||||| |||||| ||  |||||||||||| || ||||| |||||||||||||    
T  30102574 ttgcaatttggagagagatagacaaaaaaaaataagtggtgggtcctatcactaagtggatcccaccatca 30102504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 238
Target Start/End: Original strand, 7712329 - 7712449
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccacc 216  Q
    ||||||||||||||||   |||| ||||||| |  ||||| || |||||| ||||| ||| || |||||| ||| ||||||||||||||| | | |||||    
T  7712329 aagatcctctccatttataaaaataaatgga-agatgcaatttagagagagatagagacataagatagatagtgagtcctaccattaagtgggtgccacc 7712427  T
Q  217 atcagtaattatattttatttt 238  Q
    |||  ||||||  |||||||||    
T  7712428 atctttaattactttttatttt 7712449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 33608845 - 33608901
Alignment:
Q  124 tctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaa 181  Q
    ||||||||||| |||| |||||||| ||||||| ||||||||| ||| ||||||||||    
T  33608845 tctccatttggtaaaataaatggag-tttgcaatttggagagagataaacacaaaaaa 33608901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 35737193 - 35737149
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaatagatggtgggtcc 195  Q
    |||||| ||||||||| ||||||||||||||||  ||||||||||    
T  35737193 ttgcaatttggagagagatagacacaaaaaataagtggtgggtcc 35737149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 115 - 238
Target Start/End: Original strand, 18625380 - 18625503
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| | |||||    
T  18625380 tgaagatcctctccatttggcaaaataaatggagatttgcaagttggagagagaaagacacaaaaaatagatggtgggtcctaccactaagtgggtccca 18625479  T
Q  215 ccatcagtaattatattttatttt 238  Q
    |||||| |||||||||||||||||    
T  18625480 ccatcattaattatattttatttt 18625503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 35660568 - 35660687
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| | |||||    
T  35660568 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtccca 35660667  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  35660668 ccatcattaattatatttta 35660687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 37266852 - 37266728
Alignment:
Q  110 tgggatgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtaga 209  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |     
T  37266852 tggggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcataccactaagtggg 37266753  T
Q  210 tcccaccatcagtaattatatttta 234  Q
    ||||||||||| |||||||||||||    
T  37266752 tcccaccatcattaattatatttta 37266728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 13032234 - 13032111
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| |||||||||||| ||||||||| ||| | | |||||    
T  13032234 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgagtcctaccactaaatgggtccca 13032135  T
Q  215 ccatcagtaattatattttatttt 238  Q
    |||||| |||||||||||||||||    
T  13032134 ccatcattaattatattttatttt 13032111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 11775912 - 11775790
Alignment:
Q  112 ggatgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatc 211  Q
    ||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| | ||    
T  11775912 ggatgaagatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtggatcctaccactaagtgggtc 11775813  T
Q  212 ccaccatcagtaattatatttta 234  Q
    ||||| ||| |||||||||||||    
T  11775812 ccaccgtcattaattatatttta 11775790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 32129576 - 32129695
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||||||||| |||||||| |||  |||||||||||| |||||||| |||||||||||||||||||||||| ||||| | |||||    
T  32129576 tgaagatcctctccatttggcaaaataaatggagttttataagttggagagagatagacaccaaaaatagatggtgggtcctaccactaagtgggtccca 32129675  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  32129676 ccatcattaattatatttta 32129695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 120 - 234
Target Start/End: Original strand, 4895699 - 4895813
Alignment:
Q  120 atcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatc 219  Q
    |||||||  ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| | ||||||||||    
T  4895699 atcctctttatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatc 4895798  T
Q  220 agtaattatatttta 234  Q
    | |||||||||||||    
T  4895799 attaattatatttta 4895813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 14349924 - 14349800
Alignment:
Q  110 tgggatgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtaga 209  Q
    |||| ||||||||||||| |||||| |||| |||||||| |||| |||||||||||| | ||||||||||||||||||||||||||||||| ||||| |     
T  14349924 tggggtgaagatcctctctatttggtaaaataaatggagttttgtaagttggagagagacagacacaaaaaatagatggtgggtcctaccactaagtggg 14349825  T
Q  210 tcccaccatcagtaattatatttta 234  Q
    ||||||||||| |||||||||||||    
T  14349824 tcccaccatcattaattatatttta 14349800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 40753116 - 40753240
Alignment:
Q  110 tgggatgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtaga 209  Q
    |||| ||||||||||||| ||||||||||| ||||  || ||||||||||||||| | |||||||||||||||| |||||||||||||||| ||||| |     
T  40753116 tggggtgaagatcctctctatttggcaaaataaataaagttttgcaagttggagaaagatagacacaaaaaatatatggtgggtcctaccactaagtggg 40753215  T
Q  210 tcccaccatcagtaattatatttta 234  Q
    ||||||||||| |||||||||||||    
T  40753216 tcccaccatcattaattatatttta 40753240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 34827308 - 34827189
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    |||||||| ||||||||| |||||| |||||||| | ||||||||||||||| ||||||| |||||||||||||||| |||||||| ||||| | |||||    
T  34827308 tgaagatcatctccatttagcaaaataaatggagttatgcaagttggagagagatagacaaaaaaaatagatggtggatcctaccactaagtgggtccca 34827209  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||  |||||||||||||    
T  34827208 ccatctttaattatatttta 34827189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 39902531 - 39902412
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||| ||||||||||||| ||||| |||||||| ||| ||||||||||||| ||| |||||| |||||||||||||||||||||| ||| | ||| |||    
T  39902531 tgaagttcctctccatttgacaaaataaatggagttttacaagttggagagagataaacacaagaaatagatggtgggtcctaccactaaatggattcca 39902432  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  39902431 ccatcattaattatatttta 39902412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 227
Target Start/End: Complemental strand, 29341108 - 29340999
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccacc 216  Q
    |||||||||||||||||| | || |||||||| | ||||| ||||||||| ||||||||| ||||||||| ||||||||||| ||||||| | |||||||    
T  29341108 aagatcctctccatttggtataataaatggag-tatgcaatttggagagagatagacacagaaaatagatagtgggtcctactattaagtgggtcccacc 29341010  T
Q  217 atcagtaatta 227  Q
    |||| ||||||    
T  29341009 atcattaatta 29340999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 128 - 234
Target Start/End: Original strand, 8440943 - 8441049
Alignment:
Q  128 catttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaatta 227  Q
    |||||||||||| |||||||| ||||||||||||||  | |||||||| |||||||||||||| | | ||||| |||||   ||||||||||| ||||||    
T  8440943 catttggcaaaataaatggagttttgcaagttggaggtagatagacaccaaaaatagatggtgcgacataccactaagtgtgtcccaccatcattaatta 8441042  T
Q  228 tatttta 234  Q
    |||||||    
T  8441043 tatttta 8441049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 36290682 - 36290599
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||||| || ||||| ||||||||||||| ||||||| |||||    
T  36290682 ttgcaatttggagagagatagacacaaaaaataagtggtgggtcctatcactaagtggatcccaccatcattaattatttttta 36290599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 226
Target Start/End: Complemental strand, 43309224 - 43309113
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||  |||||  |||| |||||||| ||||||||||||||||| ||||||| ||||||||||| |||| || ||||||||| | | | |||    
T  43309224 tgaagatcctctttatttgataaaataaatggagttttgcaagttggagagagatagacataaaaaatagatagtggatcttaccattaaatgggttcca 43309125  T
Q  215 ccatcagtaatt 226  Q
    |||||| |||||    
T  43309124 ccatcattaatt 43309113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 4592858 - 4592797
Alignment:
Q  173 cacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||||||||||||||||||||| ||||| ||||| | ||||||||||| |||||||||||||    
T  4592858 cacaaaaaatagatggtgggtcttaccactaagtgggtcccaccatcattaattatatttta 4592797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 43222189 - 43222129
Alignment:
Q  168 atagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattat 228  Q
    ||||||||||||||||||||||||||| || |||||| | ||||||||||||| |||||||    
T  43222189 atagacacaaaaaatagatggtgggtcttatcattaaatggatcccaccatcattaattat 43222129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 206
Target Start/End: Complemental strand, 18653472 - 18653386
Alignment:
Q  119 gatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagt 206  Q
    ||||||||| | ||| ||||| |||||||| ||||||| ||| ||||| ||||||||||||||||||| ||| || ||||||||||||    
T  18653472 gatcctctcaaattgtcaaaataaatggag-tttgcaatttgaagagagatagacacaaaaaatagatagtgagttctaccattaagt 18653386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 3057135 - 3057204
Alignment:
Q  136 aaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagt 206  Q
    |||| ||||||| |||||||| ||||| ||| ||| |||||||||||||||||||| ||||||||||||||    
T  3057135 aaaataaatgga-atttgcaatttggatagagataaacacaaaaaatagatggtggatcctaccattaagt 3057204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 27428877 - 27428931
Alignment:
Q  152 tgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagt 206  Q
    ||||| ||||| ||| |||||||||||||||||||||||  ||||||||||||||    
T  27428877 tgcaatttggaaagagatagacacaaaaaatagatggtgaatcctaccattaagt 27428931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 227
Target Start/End: Complemental strand, 31546599 - 31546490
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccacc 216  Q
    |||||| || |||||||||| || |||||||| | ||||| ||| |||||  |||||| | ||||||||||||||| ||||| ||||||| ||||||| |    
T  31546599 aagatcatccccatttggcataataaatggag-tatgcaatttgaagagaggtagacatataaaatagatggtgggccctactattaagtggatcccatc 31546501  T
Q  217 atcagtaatta 227  Q
    || | ||||||    
T  31546500 ataattaatta 31546490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 234
Target Start/End: Complemental strand, 32793487 - 32793371
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccacc 216  Q
    |||||||| || |||| |||||| |||||||| ||| ||| || |||||| ||| |||||||||||||||| ||  || ||| | ||||||| ||||||     
T  32793487 aagatcctatctatttagcaaaataaatggag-tttacaatttagagagagatatacacaaaaaatagatgatgattcttactactaagtaggtcccaca 32793389  T
Q  217 atcagtaattatatttta 234  Q
    ||||  ||||||||||||    
T  32793388 atcatcaattatatttta 32793371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 1475640 - 1475700
Alignment:
Q  141 aaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccat 201  Q
    |||||| | |||||||||| |||||||||||| ||||||||||| | |||||||| |||||    
T  1475640 aaatggtgttttgcaagtttgagagaaatagatacaaaaaatagctagtgggtcccaccat 1475700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 41660186 - 41660103
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||  | || || || | ||||||||||| ||||||| |||||    
T  41660186 ttgcaatttggagagagatagacacaaaaaataagtggtgggtctcatcactaggtgggtcccaccatcattaattatttttta 41660103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 10242965 - 10242889
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtc 194  Q
    |||| ||||||||||| |||||| |  ||| | ||||||  ||||||||||||| |||| ||||||||||||||||||    
T  10242965 aagaacctctccatttagcaaaataggtggtg-tttgcactttggagagaaataaacacgaaaaatagatggtgggtc 10242889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 3041302 - 3041390
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaataga-tggtgggtcctaccattaagtagatcccaccatcagtaattatattttatttt 238  Q
    |||||| ||||||||| ||||| ||||||||   | |||||||||||| || ||||  | ||||||||||| ||||||| |||||||||    
T  3041302 ttgcaatttggagagagatagatacaaaaaaacaagtggtgggtcctatcactaagcgggtcccaccatcattaattattttttatttt 3041390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 19830390 - 19830509
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  19830390 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggggagaaatagacacaaaaaatagatggtgggtcctaccattaagtgggtccca 19830489  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  19830490 ccatcattaattatatttta 19830509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 27033767 - 27033648
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    |||||||| ||||||||||  |||| |||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||| |||||||    
T  27033767 tgaagatcatctccatttgataaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggtcctaccactaagtggatccca 27033668  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  27033667 ccatcattaattatatttta 27033648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 34373947 - 34373828
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||| ||||||||||||||||| |||| | | ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| |||||    
T  34373947 tgaagattctctccatttggcaaaataaattgtgttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaattaggtccca 34373848  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  34373847 ccatcattaattatatttta 34373828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 115 - 238
Target Start/End: Original strand, 43719906 - 43720029
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||  ||||| |||||||| ||||||||||||||||| |||||||||||||||| || ||||||||||||| ||||| | |||||    
T  43719906 tgaagatcctctccatttaacaaaataaatggagttttgcaagttggagagagatagacacaaaaaataaattgtgggtcctaccactaagtgggtccca 43720005  T
Q  215 ccatcagtaattatattttatttt 238  Q
    |||||| |||||||||||||||||    
T  43720006 ccatcattaattatattttatttt 43720029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 2230099 - 2229980
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    |||| |||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| | | |||    
T  2230099 tgaacatcctctccatttggcaaaataattggagttttgcaagttggagagagatagacacaaaaaatagatgatgggtcctaccactaagtggtttcca 2230000  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  2229999 ccatcattaattatatttta 2229980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 114 - 234
Target Start/End: Complemental strand, 46167510 - 46167390
Alignment:
Q  114 atgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccc 213  Q
    ||||| ||||||||||||| |||||| |||||||| |||| |||||||||||| |||||||||||||||| |||||||||||||||| ||||| |||||     
T  46167510 atgaacatcctctccatttagcaaaataaatggagttttgtaagttggagagagatagacacaaaaaatatatggtgggtcctaccactaagtggatcct 46167411  T
Q  214 accatcagtaattatatttta 234  Q
    ||||| | |||||||||||||    
T  46167410 accattattaattatatttta 46167390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 115 - 215
Target Start/End: Complemental strand, 24754773 - 24754673
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||| ||||||||||||  ||||||||| ||||| | |||||    
T  24754773 tgaagatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacacaaaatagatggtatgtcctaccactaagtgggtccca 24754674  T
Q  215 c 215  Q
    |    
T  24754673 c 24754673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 115 - 215
Target Start/End: Complemental strand, 24763770 - 24763670
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||| ||||||||||||  ||||||||| ||||| | |||||    
T  24763770 tgaagatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacacaaaatagatggtatgtcctaccactaagtgggtccca 24763671  T
Q  215 c 215  Q
    |    
T  24763670 c 24763670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 115 - 220
Target Start/End: Complemental strand, 40851890 - 40851785
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||| ||||| ||||| |||||||| ||||||||||||||| | |||||||||||||||||||||||||| | |||| ||||| | ||| |    
T  40851890 tgaagatcctctcaatttgacaaaataaatggagttttgcaagttggagaaagatagacacaaaaaatagatggtgggttcaaccactaagtgggtccta 40851791  T
Q  215 ccatca 220  Q
    ||||||    
T  40851790 ccatca 40851785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 130 - 234
Target Start/End: Original strand, 34373559 - 34373663
Alignment:
Q  130 tttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattata 229  Q
    |||||||||| |||| ||| ||||||||||  | ||| |||||||| |||||||||||||||||||||||| ||||| | ||||||||||| ||||||||    
T  34373559 tttggcaaaataaatagagttttgcaagttccatagagatagacactaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattata 34373658  T
Q  230 tttta 234  Q
    |||||    
T  34373659 tttta 34373663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 238
Target Start/End: Complemental strand, 48084934 - 48084812
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaa-aatagatggtgggtcctaccattaagtagatcccac 215  Q
    |||||||||||||||||  |||| |||| ||| ||||||| |||| |||| |||||||||||| |||||||||||||||| |||| ||||| | |||||     
T  48084934 aagatcctctccatttgctaaaataaattgagttttgcaatttggggagagatagacacaaaagaatagatggtgggtccaaccactaagtgggtcccat 48084835  T
Q  216 catcagtaattatattttatttt 238  Q
    ||||| ||||||| |||||||||    
T  48084834 catcattaattattttttatttt 48084812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 234
Target Start/End: Original strand, 550790 - 550894
Alignment:
Q  129 atttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattat 228  Q
    ||||||||||| |||||||| ||||||| ||||||| | ||| | |||||||||||||||||| ||||| |||||||| | ||||||||| | || ||||    
T  550790 atttggcaaaataaatggag-tttgcaatttggagaaagatatatacaaaaaatagatggtggatcctatcattaagtgggtcccaccattattatttat 550888  T
Q  229 atttta 234  Q
    ||||||    
T  550889 atttta 550894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 31523663 - 31523746
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||||| ||||||||| ||||||||||||||||  ||||||||||||  | ||||| | ||||||||||| ||||||| |||||    
T  31523663 ttgcaatttggagagagatagacacaaaaaataagtggtgggtcctattactaagtgggtcccaccatcattaattatttttta 31523746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 234
Target Start/End: Complemental strand, 12403061 - 12402963
Alignment:
Q  136 aaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||| |||| ||| ||||||||||||||||| ||||| | ||||| |||||||||| | |||||| |||||   ||||||||| | |||||||||||||    
T  12403061 aaaataaatagagttttgcaagttggagagagatagatataaaaattagatggtggattctaccactaagtgagtcccaccattattaattatatttta 12402963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 24647954 - 24647905
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggaga 164  Q
    ||||||||||||||||||| ||||| |||||||| |||||||||||||||    
T  24647954 tgaagatcctctccatttgacaaaataaatggagttttgcaagttggaga 24647905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 234
Target Start/End: Original strand, 566746 - 566852
Alignment:
Q  128 catttggcaaaagaaatggagatttgcaagttggagagaaatagacac-aaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaatt 226  Q
    |||||||||||| |||||||| ||||||| ||||||||| ||||| || |||||||| |||| || ||||| |||||||| | ||||||| | | || ||    
T  566746 catttggcaaaataaatggag-tttgcaatttggagagagatagatacaaaaaaatatatggcggatcctatcattaagtgggtcccacctttattattt 566844  T
Q  227 atatttta 234  Q
    ||||||||    
T  566845 atatttta 566852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 42613160 - 42613077
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||||| ||| ||||| ||||||| ||||||||  |||||||||||| || ||||| | ||||||||||| ||||||| |||||    
T  42613160 ttgcaatttgaagagagatagacaaaaaaaataagtggtgggtcctatcactaagtgggtcccaccatcattaattatttttta 42613077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 49679265 - 49679348
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||||| ||||||||| ||||||||||||||||  ||| |||||||| || ||| | | ||||||||||| ||||||| |||||    
T  49679265 ttgcaatttggagagagatagacacaaaaaataagtggcgggtcctatcactaaatgggtcccaccatcattaattatttttta 49679348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 204
Target Start/End: Complemental strand, 33632935 - 33632849
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaa 204  Q
    |||||| ||||||||||| | || ||||||||   ||||| ||||||||| ||||||||| ||||||||| |||| |||||| |||||    
T  33632935 aagatcttctccatttggtataataaatggag-catgcaatttggagagagatagacacataaaatagatagtggatcctactattaa 33632849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 28229365 - 28229450
Alignment:
Q  118 agatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaa 204  Q
    |||||||||||||||   |||| |||||||| | ||||| | ||| ||| ||||||||||||||||| ||||| |||||| ||||||    
T  28229365 agatcctctccatttattaaaataaatggag-tgtgcaattaggaaagatatagacacaaaaaataggtggtgagtcctatcattaa 28229450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 40810357 - 40810438
Alignment:
Q  158 ttggagagaaatagacacaaaa-aatagatggtgggtcctaccattaagtagatcccaccatcagtaattatattttatttt 238  Q
    ||||||||| ||| ||| |||| |||||||||||||||  |||| ||||| | ||||| ||||| ||||||| |||||||||    
T  40810357 ttggagagagataaacaaaaaagaatagatggtgggtctaaccactaagtgggtcccatcatcattaattattttttatttt 40810438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 4804564 - 4804445
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||| | |||||    
T  4804564 tgaagatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtccca 4804465  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  4804464 ccatcattaattatatttta 4804445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 21159323 - 21159447
Alignment:
Q  110 tgggatgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtaga 209  Q
    |||| |||||||||||||||||||  |||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |     
T  21159323 tggggtgaagatcctctccatttgttaaaataaatgaagttttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccactaagtggg 21159422  T
Q  210 tcccaccatcagtaattatatttta 234  Q
    ||||||||||| |||||||||||||    
T  21159423 tcccaccatcattaattatatttta 21159447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 115 - 238
Target Start/End: Original strand, 13089708 - 13089831
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||||||||| |||||| | ||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| |  ||||    
T  13089708 tgaagatcctctccatttggcaaaataaatggtgttttgcaagttggagagagatagacacaaaatatagatggtgggtcctaccactaagtgggcccca 13089807  T
Q  215 ccatcagtaattatattttatttt 238  Q
    |||||| |||||||||||||||||    
T  13089808 ccatcattaattatattttatttt 13089831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 112 - 238
Target Start/End: Complemental strand, 27826657 - 27826531
Alignment:
Q  112 ggatgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatc 211  Q
    ||||||||||||||||||||||| |||| || || ||||||||||| | |||||| ||||||||||||||||||||||||||||||||| ||||| | ||    
T  27826657 ggatgaagatcctctccatttggtaaaataactgaagatttgcaaggttgagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtc 27826558  T
Q  212 ccaccatcagtaattatattttatttt 238  Q
    ||||||||| |||||||||||||||||    
T  27826557 ccaccatcattaattatattttatttt 27826531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 117 - 234
Target Start/End: Complemental strand, 12412751 - 12412634
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccacc 216  Q
    |||||| |||||||||||||||| |||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||| | | |||||    
T  12412751 aagatcttctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggtcctaccactaagtgggttccacc 12412652  T
Q  217 atcagtaattatatttta 234  Q
    |||| |||||||||||||    
T  12412651 atcattaattatatttta 12412634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 17944278 - 17944159
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    |||||||||||| |||||||||||| |||||||| |||| |||||||||||| |||||||||||||||||||||| |||||||||| ||| | | |||||    
T  17944278 tgaagatcctcttcatttggcaaaataaatggagttttgtaagttggagagagatagacacaaaaaatagatggtaggtcctaccactaaatgggtccca 17944179  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  17944178 ccatcattaattatatttta 17944159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 1249107 - 1249224
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||||||||| |||||||| |||| |||||||||||| | |||||  |||||||||||||||||||||||| ||||| | |||||    
T  1249107 tgaagatcctctccatttggcaaaataaatggagttttgtaagttggagagagacagaca--aaaaatagatggtgggtcctaccactaagtgggtccca 1249204  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  1249205 ccatcattaattatatttta 1249224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 7162200 - 7162081
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    |||||||| ||||||||||  |||| |||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||| | ||||| | |||||    
T  7162200 tgaagatcatctccatttgataaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggtcctactactaagtgggtccca 7162101  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  7162100 ccatcattaattatatttta 7162081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 114 - 234
Target Start/End: Original strand, 227521 - 227642
Alignment:
Q  114 atgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaa-aatagatggtgggtcctaccattaagtagatcc 212  Q
    ||||||||||||||||||||  |||| |||||||| ||||||  ||||||||| |||||||||||| ||||||||||||||||||||| ||||| |||||    
T  227521 atgaagatcctctccatttgctaaaataaatggagttttgcattttggagagagatagacacaaaagaatagatggtgggtcctaccactaagtggatcc 227620  T
Q  213 caccatcagtaattatatttta 234  Q
    || ||||| | ||||| |||||    
T  227621 catcatcattgattatttttta 227642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 32737973 - 32737895
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggt 193  Q
    ||||||||||||||||||||||||| |||| ||| |||||| |||||||||| ||||||||||||||||||||||||||    
T  32737973 tgaagatcctctccatttggcaaaataaatagagttttgcaggttggagagagatagacacaaaaaatagatggtgggt 32737895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 1516168 - 1516251
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccat 201  Q
    |||||||| |||||||||||||| |||||||| ||||||| ||||||||| || || |||||||||||||||||| ||| |||||    
T  1516168 aagatcctatccatttggcaaaataaatggag-tttgcaatttggagagagatggatacaaaaaatagatggtggatcccaccat 1516251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 1518257 - 1518340
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccat 201  Q
    |||||||| |||||||||||||| |||||||| ||||||| ||||||||| || || |||||||||||||||||| ||| |||||    
T  1518257 aagatcctatccatttggcaaaataaatggag-tttgcaatttggagagagatggatacaaaaaatagatggtggatcccaccat 1518340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 29698220 - 29698160
Alignment:
Q  174 acaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||||||||||||||||| |||||||||||||| | ||||||||||| |||||||||||||    
T  29698220 acaaaaaatagatggtggatcctaccattaagtgggtcccaccatcattaattatatttta 29698160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 24484959 - 24484876
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||||| || ||||| | ||||||||||| ||||||| |||||    
T  24484959 ttgcaatttggagagagatagacacaaaaaataagtggtgggtcctatcactaagtgggtcccaccatcattaattatttttta 24484876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 234
Target Start/End: Original strand, 13888483 - 13888601
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaa-aatagatggtgggtcctaccattaagtagatcccac 215  Q
    ||||||||||| || ||  |||| |||| ||| ||||||| ||||||||| ||| |||||||| |||||||||||| |||||||||||| | | |||||     
T  13888483 aagatcctctcaatatgctaaaataaatagagttttgcaatttggagagagatatacacaaaataatagatggtggttcctaccattaactgggtcccat 13888582  T
Q  216 catcagtaattatatttta 234  Q
    ||||| ||||||| |||||    
T  13888583 catcattaattatttttta 13888601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 234
Target Start/End: Original strand, 2800574 - 2800689
Alignment:
Q  119 gatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccat 218  Q
    |||||||||||||||  ||||  |||||| ||   ||| ||||||||| ||||||||| ||||||||| |||| || ||||||||||| | |||||||||    
T  2800574 gatcctctccatttgataaaattaatggaaatacacaatttggagagagatagacacataaaatagatagtggatcataccattaagtgggtcccaccat 2800673  T
Q  219 cagtaattatatttta 234  Q
    || | ||||| |||||    
T  2800674 cattgattatttttta 2800689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 2142288 - 2142371
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||| | ||||| || | | ||||||||| ||||||| |||||    
T  2142288 ttgcaatttggagagagatagacacaaaaaataagtggtgggtcccatcattaggtgggttccaccatcattaattatttttta 2142371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 227
Target Start/End: Original strand, 7215816 - 7215923
Alignment:
Q  120 atcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatc 219  Q
    ||||||||||||||  |||| |||||||  |   ||| ||||||||| ||||||||| ||||||||| ||||||||||||| ||| | | |||||| |||    
T  7215816 atcctctccatttgataaaataaatggaagtgcacaatttggagagagatagacacataaaatagatagtgggtcctaccactaattgggtcccactatc 7215915  T
Q  220 agtaatta 227  Q
    | ||||||    
T  7215916 attaatta 7215923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 1515503 - 1515576
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgg 191  Q
    |||||||| || ||||||||||| |||||||| ||||||| ||||||||| || || | ||||||||||||||||    
T  1515503 aagatcctatcaatttggcaaaataaatggag-tttgcaatttggagagagatggataaaaaaaatagatggtgg 1515576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 32254033 - 32254113
Alignment:
Q  158 ttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatattttatttt 238  Q
    |||||| || ||||||| |||||| || |||||||||||| ||||||||   |||||| |||| ||||||| |||||||||    
T  32254033 ttggagggagatagacaaaaaaaaaaggtggtgggtcctatcattaagtgagtcccactatcattaattattttttatttt 32254113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 7098190 - 7098260
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaa-tagatggtgggtcctaccattaagtagatcccaccatca 220  Q
    |||||| ||||||||| ||||||| |||||| ||  |||||||||||| || ||||| |||||||||||||    
T  7098190 ttgcaatttggagagagatagacaaaaaaaaataagtggtgggtcctatcactaagtggatcccaccatca 7098260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 7545718 - 7545648
Alignment:
Q  151 ttgcaagttggagagaaatagacac-aaaaaatagatggtgggtcctaccattaagtagatcccaccatca 220  Q
    |||||| ||||||||| |||||||| ||||||||  |||||||||||| || ||||| |||||||| ||||    
T  7545718 ttgcaatttggagagagatagacaccaaaaaataagtggtgggtcctatcactaagtggatcccactatca 7545648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 28696624 - 28696680
Alignment:
Q  124 tctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaa 181  Q
    |||||||||||||||| |||| ||| ||||||| ||||||||| ||||||| ||||||    
T  28696624 tctccatttggcaaaataaattgag-tttgcaatttggagagagatagacaaaaaaaa 28696680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 20228516 - 20228552
Alignment:
Q  168 atagacacaaaaaatagatggtgggtcctaccattaa 204  Q
    |||||||||||||||||||||||||||| | ||||||    
T  20228516 atagacacaaaaaatagatggtgggtcccatcattaa 20228552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 22122500 - 22122536
Alignment:
Q  168 atagacacaaaaaatagatggtgggtcctaccattaa 204  Q
    |||||||||||||||||||||||||||| | ||||||    
T  22122500 atagacacaaaaaatagatggtgggtcccatcattaa 22122536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 30460930 - 30460875
Alignment:
Q  124 tctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaa 180  Q
    |||||||||| ||||| |||||||| ||||||| ||||||| | |||||||||||||    
T  30460930 tctccatttgacaaaataaatggag-tttgcaatttggagaaagatagacacaaaaa 30460875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 19901877 - 19901996
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    |||||||||||||||||||| |||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| | |||||    
T  19901877 tgaagatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtccca 19901976  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  19901977 ccatcattaattatatttta 19901996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 56558395 - 56558276
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| || ||||| | |||||    
T  56558395 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctatcactaagtgggtccca 56558296  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  56558295 ccatcattaattatatttta 56558276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 34778537 - 34778418
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||| |||||||| ||||| | |||||    
T  34778537 tgaagatcctctccatttggcaaaataaatggagttttgcaagttgaagagagatagacacaaaaaatagatggtggatcctaccactaagtgggtccca 34778438  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  34778437 ccatcattaattatatttta 34778418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 115 - 244
Target Start/End: Original strand, 33247089 - 33247218
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| ||||||||||||||| |||||| ||| | | | |||    
T  33247089 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggttctaccactaaatgggttcca 33247188  T
Q  215 ccatcagtaattatattttattttcttcga 244  Q
    |||||| ||||||||||||||||| |||||    
T  33247189 ccatcattaattatattttatttttttcga 33247218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 3952129 - 3952248
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||||||||| |||||||| || |||||||||||||| ||||||| ||||||||||||||||||||||||| ||||| | || ||    
T  3952129 tgaagatcctctccatttggcaaaataaatggagtttggcaagttggagagagatagacaaaaaaaatagatggtgggtcctaccactaagtgggtctca 3952228  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  3952229 ccatcattaattatatttta 3952248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 5416425 - 5416543
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||| |||||||||| ||||||||||||| ||||| | |||||    
T  5416425 tgaagatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacac-aaaaatagattgtgggtcctaccactaagtgggtccca 5416523  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  5416524 ccatcattaattatatttta 5416543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 5763121 - 5763240
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||| ||||||||||| | |||||| ||| ||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| | |||||    
T  5763121 tgaagatcctctcaatttggcaaaatatatggagttttacaagttggagagagatagaaacaaaaaatagatggtgggtcctaccactaagtgggtccca 5763220  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  5763221 ccatcattaattatatttta 5763240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 241
Target Start/End: Original strand, 12312434 - 12312561
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagac-acaaaaaatagatggtgggtcctaccattaagtagatccc 213  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||| | |||||||||||||||| |||||||| ||||| | ||||    
T  12312434 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacaaaaaaaaatagatggtggatcctaccactaagtgggtccc 12312533  T
Q  214 accatcagtaattatattttattttctt 241  Q
    | ||||| ||||||||||||| ||||||    
T  12312534 atcatcattaattatattttactttctt 12312561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 23610758 - 23610639
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    |||||||||||||||||||  |||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| | |||||    
T  23610758 tgaagatcctctccatttgataaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcataccactaagtgggtccca 23610659  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| ||| |||||||||    
T  23610658 ccatcattaaatatatttta 23610639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 230
Target Start/End: Complemental strand, 24073732 - 24073617
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||| ||||| | ||||     
T  24073732 tgaagatcctccccatttggcaaaataaatggagatttgtaagttggagagagatagacacaacaaatagatggtgggtcctaccactaagtgggtcccg 24073633  T
Q  215 ccatcagtaattatat 230  Q
    |||||| |||||||||    
T  24073632 ccatcattaattatat 24073617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 18206999 - 18207118
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||| ||||| ||||| || |||||||||| |||||| ||||||| ||||||||||||||||||||||||| ||||| | |||||    
T  18206999 tgaagatcctctccatttgacaaaataaatgtagttttgcaagttagagagagatagacaaaaaaaatagatggtgggtcctaccactaagtgggtccca 18207098  T
Q  215 ccatcagtaattatatttta 234  Q
     ||||| |||||||||||||    
T  18207099 tcatcattaattatatttta 18207118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 33262511 - 33262630
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||| ||||||||||| |||| | | |||||||||| |||||| |||||||||||||||||||||||| |||||||| ||| ||| |||||    
T  33262511 tgaagatcctctctatttggcaaaataaattgtgttttgcaagttagagagagatagacacaaaaaatagatggtggatcctaccactaaataggtccca 33262610  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  33262611 ccatcattaattatatttta 33262630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 124 - 234
Target Start/End: Complemental strand, 30568008 - 30567898
Alignment:
Q  124 tctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagta 223  Q
    |||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| | | ||| ||||| ||    
T  30568008 tctccatttggcaaaataaatggagttttgcaagttgaagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggttccatcatcatta 30567909  T
Q  224 attatatttta 234  Q
    |||||||||||    
T  30567908 attatatttta 30567898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 38079679 - 38079798
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||  ||||| |||||||| ||||| |||| |||||| |||||||||| |||||||||||||||||||| | ||||| ||| |||    
T  38079679 tgaagatcctctccatttaacaaaataaatggagttttgctagtttgagagagatagacacaagaaatagatggtgggtcctactactaagtggattcca 38079778  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  38079779 ccatcattaattatatttta 38079798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 12153270 - 12153184
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccat 201  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| |||||    
T  12153270 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaattagatggtgggtcccaccat 12153184  T

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Target: chr4; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 234
Target Start/End: Original strand, 47922327 - 47922445
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaa-aatagatggtgggtcctaccattaagtagatcccac 215  Q
    |||||||||||||||||  |||| |||| ||| ||||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||||| | |||||     
T  47922327 aagatcctctccatttgctaaaataaattgagttttgcaatttggagagatatagacacaaaagaatagatggtgggtcctaccactaagtgggtcccat 47922426  T
Q  216 catcagtaattatatttta 234  Q
    ||||  ||||||| |||||    
T  47922427 catctataattatttttta 47922445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 52018879 - 52018790
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaa 204  Q
    |||||||||||||||||| |||||| |||||||| ||||||||||||||||| ||||| |||||||||| || |||| ||| ||||||||    
T  52018879 tgaagatcctctccatttagcaaaataaatggagttttgcaagttggagagagatagatacaaaaaataaatagtggatcccaccattaa 52018790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 39862633 - 39862514
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    |||||||||||||||||||  |||| |||| ||  |||||||||| |||||| ||||||||||||||||||||||| |||||| || ||| |   | |||    
T  39862633 tgaagatcctctccatttgataaaataaatagaattttgcaagtttgagagagatagacacaaaaaatagatggtgtgtcctatcactaaatgagttcca 39862534  T
Q  215 ccatcagtaattatatttta 234  Q
    |||||| |||||||||||||    
T  39862533 ccatcattaattatatttta 39862514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 227
Target Start/End: Complemental strand, 23474224 - 23474115
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccacc 216  Q
    |||||||||||||||| ||| || |||||||| | ||||| |||| |||| ||||||||| ||||||||||||||||||||| ||| |||  ||||||||    
T  23474224 aagatcctctccatttagcataataaatggag-tatgcaatttggggagagatagacacataaaatagatggtgggtcctactattgagtgaatcccacc 23474126  T
Q  217 atcagtaatta 227  Q
    |||| ||||||    
T  23474125 atcattaatta 23474115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 33524378 - 33524313
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaa 180  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||| |||||||    
T  33524378 tgaagatcctctccatttggcaaaataaatggagatttggaagttggagagagatagatacaaaaa 33524313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 56269071 - 56269153
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttt 233  Q
    |||||| ||||||||| ||||||||||||||||  ||||||||||||||| ||||| | ||||||||||| ||||||| ||||    
T  56269071 ttgcaatttggagagagatagacacaaaaaataagtggtgggtcctaccactaagtgggtcccaccatcattaattatttttt 56269153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 56453816 - 56453898
Alignment:
Q  152 tgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||||| |||||||| | ||||||||||| | ||||| |||||    
T  56453816 tgcaatttggagagagatagacacaaaaaataggtggtgggtcctatcattaagtgggtcccaccatcattcattatttttta 56453898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 34927596 - 34927488
Alignment:
Q  121 tcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaa-aatagatggtgggtcctaccattaagtagatcccaccatc 219  Q
    ||||||||||||   |||| |||||| | ||||||| ||  ||||| |||||||||||| ||||||||||||||||||||||||||||  || || ||||    
T  34927596 tcctctccatttactaaaataaatggggttttgcaatttaaagagagatagacacaaaagaatagatggtgggtcctaccattaagtatgtctcatcatc 34927497  T
Q  220 agtaattat 228  Q
    | |||||||    
T  34927496 attaattat 34927488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 5524527 - 5524444
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||||| ||||||||| ||||||| ||||||||  |||||||||||| || ||||| | ||||||||||| ||||||| |||||    
T  5524527 ttgcaatttggagagagatagacataaaaaataagtggtgggtcctatcagtaagtgggtcccaccatcattaattatttttta 5524444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 47922052 - 47922157
Alignment:
Q  129 atttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattat 228  Q
    ||||||||||| |||||||  ||||||||||  ||| |||    |||||||||||||| ||||||| ||||| ||||| | | ||||||||| ||| |||    
T  47922052 atttggcaaaataaatggaattttgcaagttaaagataaa----cacaaaaaatagatagtgggtcttaccactaagtgggttccaccatcattaaatat 47922147  T
Q  229 attttatttt 238  Q
    ||||||||||    
T  47922148 attttatttt 47922157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 1015849 - 1015931
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttt 233  Q
    |||||| || |||||| ||||||||||||||||  |||||||||| | ||||| || | ||||||||||| ||||||| ||||    
T  1015849 ttgcaatttagagagagatagacacaaaaaataagtggtgggtcccatcattaggtgggtcccaccatcattaattatttttt 1015931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 36688183 - 36688260
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattat 228  Q
    |||||| ||||||||| ||||||||||||||||  || || |||||| || ||||| | ||||||||||| |||||||    
T  36688183 ttgcaatttggagagagatagacacaaaaaataagtgttgagtcctatcactaagtgggtcccaccatcattaattat 36688260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 37002246 - 37002329
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||||| ||||| ||| ||||||||||||||||  |||||| |||||  | ||||| | ||||||||||| ||||||| |||||    
T  37002246 ttgcaatttggaaagagatagacacaaaaaataagtggtggatcctattactaagtgggtcccaccatcattaattatttttta 37002329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 42010197 - 42010114
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||||| ||||||||| ||||| ||||||||||  ||| |||||||| || ||| | | ||||||||||| ||||||| |||||    
T  42010197 ttgcaatttggagagagatagatacaaaaaataagtggcgggtcctatcactaaatgggtcccaccatcattaattatttttta 42010114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 5361506 - 5361456
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccat 201  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||| |||||    
T  5361506 ttgcaatttggagagagatagacacaaaaaataagtggtgggtcccaccat 5361456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 12241440 - 12241486
Alignment:
Q  188 gtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    ||||||||||||| ||||| | ||||||||||| |||||||||||||    
T  12241440 gtgggtcctaccactaagtgggtcccaccatcattaattatatttta 12241486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 17493083 - 17493013
Alignment:
Q  151 ttgcaagttggagagaaatagacacaa-aaaatagatggtgggtcctaccattaagtagatcccaccatca 220  Q
    |||||| ||||||||| |||||||||| ||||||  |||||||||||| || ||||| ||| |||||||||    
T  17493083 ttgcaatttggagagagatagacacaaaaaaataagtggtgggtcctatcactaagtggattccaccatca 17493013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 25442190 - 25442252
Alignment:
Q  172 acacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    ||||||||||||||| ||||||||||||| ||||| |||| ||||  || ||||||| |||||    
T  25442190 acacaaaaaatagattgtgggtcctaccactaagtggatctcaccgacattaattatttttta 25442252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 32146583 - 32146513
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaa-tagatggtgggtcctaccattaagtagatcccaccatca 220  Q
    |||||| ||||||||| ||||| |||||||| ||  |||||||||||| || ||||| |||||||||||||    
T  32146583 ttgcaatttggagagagatagatacaaaaaaataagtggtgggtcctatcactaagtggatcccaccatca 32146513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 46239047 - 46238977
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaa-tagatggtgggtcctaccattaagtagatcccaccatca 220  Q
    |||||| ||| ||||| |||||||||||||| ||  |||||||||||| || ||||| |||||||||||||    
T  46239047 ttgcaatttgaagagagatagacacaaaaaaataagtggtgggtcctatcactaagtggatcccaccatca 46238977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 53526169 - 53526099
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaa-tagatggtgggtcctaccattaagtagatcccaccatca 220  Q
    |||||| ||||||||| ||||||| |||||| ||  |||||||||||| || ||||| |||||||||||||    
T  53526169 ttgcaatttggagagagatagacaaaaaaaaataagtggtgggtcctatcactaagtggatcccaccatca 53526099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 55160365 - 55160435
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaa-tagatggtgggtcctaccattaagtagatcccaccatca 220  Q
    |||||| ||||| ||| |||||||||||||| ||  |||||||||||| || ||||| |||||||||||||    
T  55160365 ttgcaatttggaaagagatagacacaaaaaaataagtggtgggtcctatcactaagtggatcccaccatca 55160435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 25219070 - 25219006
Alignment:
Q  158 ttggagagaaatagacacaaaaaataga--tggtgggtcctaccattaagtagatcccaccatca 220  Q
    ||||||||| |||||||||||||| | |  |||||||||||| || ||||| |||||||||||||    
T  25219070 ttggagagagatagacacaaaaaaaataagtggtgggtcctatcactaagtggatcccaccatca 25219006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 26429059 - 26428999
Alignment:
Q  141 aaatggagatttgcaagttggagagaaatagacacaaaa-aatagatggtgggtcctacca 200  Q
    ||||| || ||||||| ||||||| | |||||||||||| ||||||||||| |||||||||    
T  26429059 aaatgaagttttgcaatttggagaaagatagacacaaaagaatagatggtgagtcctacca 26428999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 31862246 - 31862298
Alignment:
Q  182 tagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||||||||| |||||||| ||||| | ||||||||||| ||||||| |||||    
T  31862246 tagatggtggatcctaccactaagtgggtcccaccatcattaattatttttta 31862298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 38865340 - 38865280
Alignment:
Q  168 atagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattat 228  Q
    ||||||||||||||||  |||| |||||||||||||| ||| | ||| ||||| |||||||    
T  38865340 atagacacaaaaaatatgtggtaggtcctaccattaaataggttccagcatcattaattat 38865280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 208179 - 208060
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| | |||||    
T  208179 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagataaacacaaaaaatagatggtgggtcctaccactaagtgggtccca 208080  T
Q  215 ccatcagtaattatatttta 234  Q
     ||||| |||||||||||||    
T  208079 tcatcattaattatatttta 208060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 110 - 238
Target Start/End: Original strand, 16351 - 16479
Alignment:
Q  110 tgggatgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtaga 209  Q
    |||| |||||||||||||| || ||||||| |||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||| |     
T  16351 tggggtgaagatcctctccgttaggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaataaatggtgggtcctaccactaagtggg 16450  T
Q  210 tcccaccatcagtaattatattttatttt 238  Q
    ||||| ||||| |||||||||||||||||    
T  16451 tcccatcatcattaattatattttatttt 16479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 115 - 231
Target Start/End: Original strand, 9160 - 9276
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatccca 214  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||| ||||| ||| |||    
T  9160 tgaagatcatctccatttggcaaaataaatggagatttgcaagttggagagagatagacacagaaaatagatggtgggtccaaccactaagtggattcca 9259  T
Q  215 ccatcagtaattatatt 231  Q
    |||||| ||||||||||    
T  9260 ccatcattaattatatt 9276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 7267 - 7140
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaat----ggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagat 210  Q
    ||||||||||||||||||||||||| ||||    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| | |    
T  7267 tgaagatcctctccatttggcaaaataaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctactattaagtgggt 7168  T
Q  211 cccaccatcagtaattatattttatttt 238  Q
     ||||||||| |||||||||||||||||    
T  7167 tccaccatcattaattatattttatttt 7140  T

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Target: scaffold0006 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 73817 - 73896
Alignment:
Q  116 gaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcc 195  Q
    |||||||||||| ||||||||||| |||||| | ||||||||||||||||| |||||| ||||| |||||||||||||||    
T  73817 gaagatcctctctatttggcaaaataaatggtgttttgcaagttggagagagatagacgcaaaatatagatggtgggtcc 73896  T

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Target: scaffold0456 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 13796 - 13709
Alignment:
Q  115 tgaagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagac-acaaaaaatagatggtgggtcctaccat 201  Q
    |||||||| |||||||||||||||| |||| ||| ||||| ||||||||||| |||||| | |||||||||||||||||||| |||||    
T  13796 tgaagatcttctccatttggcaaaataaatagagttttgctagttggagagagatagacaaaaaaaaatagatggtgggtcccaccat 13709  T

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Target: scaffold0009 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 234
Target Start/End: Original strand, 6396 - 6513
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccacc 216  Q
    ||||||||||| |||| | |||| ||||||   ||||||||||||| ||| | ||||||||||||||||||||||||||||| | ||| | | | | |||    
T  6396 aagatcctctctatttcgtaaaataaatgggattttgcaagttggaaagagacagacacaaaaaatagatggtgggtcctacaactaaatgggtacaacc 6495  T
Q  217 atcagtaattatatttta 234  Q
    |||| |||||||||||||    
T  6496 atcattaattatatttta 6513  T

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Target: scaffold0126 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 22404 - 22492
Alignment:
Q  117 aagatcctctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagt 206  Q
    |||||||||| ||||| |||||| |||||||| ||||||| ||  | ||| ||||||||||||||||||| |||| |||||||| |||||    
T  22404 aagatcctctgcatttagcaaaataaatggag-tttgcaatttacaaagagatagacacaaaaaatagatagtggatcctaccactaagt 22492  T

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Target: scaffold0664 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 4695 - 4765
Alignment:
Q  151 ttgcaagttggagagaaatagacacaaaaaa-tagatggtgggtcctaccattaagtagatcccaccatca 220  Q
    |||||| ||||||||| |||||||||||||| ||  |||||||||||| || ||||| |||||||||||||    
T  4695 ttgcaatttggagagagatagacacaaaaaaataagtggtgggtcctatcactaagtggatcccaccatca 4765  T

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Target: scaffold0171 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 17311 - 17384
Alignment:
Q  161 gagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagtaattatatttta 234  Q
    |||||| ||||||||||||||||  || ||||||||| || ||||| | ||||||||||| ||||||| |||||    
T  17311 gagagagatagacacaaaaaataagtgctgggtcctatcactaagtgggtcccaccatcattaattatttttta 17384  T

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Target: scaffold0062 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 58786 - 58684
Alignment:
Q  124 tctccatttggcaaaagaaatggagatttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccattaagtagatcccaccatcagta 223  Q
    |||| |||| |||||| ||||||| || ||||| ||||||||| ||| ||| | ||||||||| |||| |||||||||||||| | | ||| ||||| ||    
T  58786 tctcgatttagcaaaataaatgga-atatgcaatttggagagagataaacatataaaatagatagtggatcctaccattaagtgggttccatcatcatta 58688  T
Q  224 atta 227  Q
    ||||    
T  58687 atta 58684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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