View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6082_low_38 (Length: 244)
Name: NF6082_low_38
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6082_low_38 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 8974046 - 8974289
Alignment:
| Q |
1 |
atctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatattacacaactaatcaaagtgaaaagtaagatt |
100 |
Q |
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| T |
8974046 |
atctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatattacacaactaatcaaagtgaaaagtaagatt |
8974145 |
T |
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| Q |
101 |
gttgtctgtgaagacaagaatggaactcttcttgatcaagtttctaatttgcttacagtaatagttgtaggagctgttattatatcaaacacttcacaaa |
200 |
Q |
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| T |
8974146 |
gttgtctgtgaagacaagaatggaactctttttgatcaagtttctaatttgcttacagtaatagttgtaggagctgttattatatcaaacacttcacaaa |
8974245 |
T |
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| Q |
201 |
ataatctatcacaacttttagggttccagcttccatatatcatt |
244 |
Q |
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| T |
8974246 |
ataatctatcacaacttttagggttccagcttccatacatcatt |
8974289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 8962661 - 8962860
Alignment:
| Q |
12 |
taggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatattacacaactaatcaaagtgaaaagtaagattgttgtctgtga |
111 |
Q |
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| T |
8962661 |
taggaaacttctctgctagtaatattcccattgttttcaaaggtatgtgtgacaattttacagaactaatcagagtgaagagcgagattgtggtttgtga |
8962760 |
T |
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| Q |
112 |
agacaagaatggaactcttcttgatcaagtttctaatttgcttacagtaatagttgtaggagctgttattatatcaaacacttcacaaaataatctatca |
211 |
Q |
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| T |
8962761 |
agacaagaatgaaagtctttctaatcaaatttataatgtggttaaagcagaagttgtaggagctatttttatatcaaacacaacacaagatgatctatca |
8962860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 8946434 - 8946351
Alignment:
| Q |
7 |
ttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatattacacaactaatcaaagtgaa |
90 |
Q |
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| T |
8946434 |
ttatctaggaaatttctctgctagcaatttgccaattgttttcatgggtttgtgcgacaatgttacagaattaatcaaagtgaa |
8946351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 189
Target Start/End: Complemental strand, 21687587 - 21687400
Alignment:
| Q |
2 |
tctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatattacacaactaatcaaagtgaaaagtaagattg |
101 |
Q |
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| T |
21687587 |
tctttctatctaggaaacttctctgctaacaattttccaattgtttttatgggtatgtgtgacaatgttaaagaattaaacacagtgaagagaaagattg |
21687488 |
T |
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| Q |
102 |
ttgtctgtgaagacaagaatggaactcttcttgatcaagtttctaatttgcttacagtaatagttgtaggagctgttattatatcaaa |
189 |
Q |
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| T |
21687487 |
tggtttgtgaaggcaataatgaaactcttcatgaacaaatgtttaatgtgtataaagcaaaagttgttggaggtgtttttatatcaaa |
21687400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 34963123 - 34963079
Alignment:
| Q |
83 |
aaagtgaaaagtaagattgttgtctgtgaagacaagaatggaact |
127 |
Q |
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| T |
34963123 |
aaagtgaaaagcaagattatagtgtgtgaagacaagaatggaact |
34963079 |
T |
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