View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6082_low_4 (Length: 680)
Name: NF6082_low_4
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6082_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 511
Target Start/End: Complemental strand, 41191145 - 41190653
Alignment:
| Q |
19 |
ggtcattatacatatatcaaataaagttaagnnnnnnnntaaatatattttgtgacttttgttgatcctcttctagctccgtctttaagagcaagtatga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41191145 |
ggtcattatacatatatcaaataaagttaacaaaaaaaataaatatattttgtgacctttgttgatcctcttctagctccgtctttaagagcaagtatga |
41191046 |
T |
|
| Q |
119 |
tagaaaa--ggaatattaacatgttgctaaagcttacaaatgaannnnnnnacctcaattcaaagtggaagaatataaacttgaaatgtaaattcaaggg |
216 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41191045 |
tagaaaaaaggaatattaacatgttgctaaagcttacaaatgaatttttttacctcaattaaaagtagaagaatataaacttgaaatgtaaattcaaggg |
41190946 |
T |
|
| Q |
217 |
ccatgtccggcaaaaagaaaaggacccaaaaatacgtggaagtctaaaacaggacataaaacaaagtgggcgactgnnnnnnnnnnggttttatttcatg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41190945 |
ccatgtccggcaaaaagaaaaggacccaaaaatacgtggaagtctaaaacaggacataaaacaaagtgggcgactgtttttttt--ggttttatttcatg |
41190848 |
T |
|
| Q |
317 |
aaataaataatccaaataaagaaagacaaaaatatttgtaggcttatgttacagtcaaaaataatttgtacactggaaaggttgttgtaaatgcctgtga |
416 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41190847 |
aaataaataatccaaataaggaaagacaaaaatatttgtaggcttatgttacagtcaaaaataatttgtacaccggaaaggttgttgtaaatgcctgtga |
41190748 |
T |
|
| Q |
417 |
cctggctttatatataagtccagttgtgacttatgtctttatatgtcacctactgattggtggtaattatattttcaaataagaattgaactttt |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41190747 |
cctggctttatatataagtccagttgtgacttatgtctttatatgtcacctactgattggtggtaattatattttcaaataagaattgaaatttt |
41190653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 541 - 663
Target Start/End: Complemental strand, 41190618 - 41190496
Alignment:
| Q |
541 |
caagtataaacgagactgtgttttgccgttttagaaaataaaaaggctgttttggtttatgcagcatcccttgtggttagatatatatatgatgtaacat |
640 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41190618 |
caagtataaacaagactgtgttttgccgttttagaaaataaaaaggctgttttggtttatccagcatcccttgtggttggatatatatatgatgtaacat |
41190519 |
T |
|
| Q |
641 |
tacattaatatttttgctgttat |
663 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
41190518 |
tacattaatatttttgctgttat |
41190496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 581 - 609
Target Start/End: Complemental strand, 9671266 - 9671238
Alignment:
| Q |
581 |
aaaaggctgttttggtttatgcagcatcc |
609 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
9671266 |
aaaaggctgttttggtttatgcagcatcc |
9671238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University