View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6082_low_47 (Length: 238)
Name: NF6082_low_47
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6082_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 131 - 223
Target Start/End: Original strand, 3725522 - 3725614
Alignment:
| Q |
131 |
gagttcaatgcataagcaatatagttcatggcaatgcagtttaaatccaatgaaactaattgatattaaacatccaccacttagattcaaaat |
223 |
Q |
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| T |
3725522 |
gagttcaatgcataagcaatatagttcatggcaatgcagttcaaatccaatgaaactaattgatattaaacatccaccacttaggtttaaaat |
3725614 |
T |
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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 3725392 - 3725457
Alignment:
| Q |
1 |
aataatttgaagggaagcgaaaatccttgtgtccttgctcatttgctcattttaaacaaacaattc |
66 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3725392 |
aataatttgaagggaagcgaaaatccttgtgtccttgctcatttgctcattttaaacaaacaattc |
3725457 |
T |
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