View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6082_low_48 (Length: 237)
Name: NF6082_low_48
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6082_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 5174320 - 5174187
Alignment:
| Q |
1 |
tctccaatttgagaagggatgacacctgttaggttattgcatgataaatccaatccagtcatattctctagaactatacccttgtaaaagtattcattgt |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5174320 |
tctccaatttgagaagggatgacacctgttagcttattgcatgataaatccaatccagtcatattctctagaactatacccttgtaagagtattcattgt |
5174221 |
T |
|
| Q |
101 |
gctttgttctgaactccacttccaagtgtagttc |
134 |
Q |
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| T |
5174220 |
gctttgttctgaactccacttcaaattgtagttc |
5174187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 5197061 - 5196930
Alignment:
| Q |
1 |
tctccaatttgagaagggatgacacctgttaggttattgcatgataaatccaatccagtcatattctctagaactatacccttgtaaaagtattcattgt |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
5197061 |
tctccaatttgagaagggatgacacctgttagcttattgcatgataaatccaatccagtcatattctctagaactttacccttgtaaaagtattcatagt |
5196962 |
T |
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| Q |
101 |
gctttgttctgaactccacttccaagtgtagt |
132 |
Q |
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| T |
5196961 |
gctttgttctgaactccacttccaaatgtagt |
5196930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 4855711 - 4855838
Alignment:
| Q |
4 |
ccaatttgagaagggatgacacctgttaggttattgcatgataaatccaatccagtcatattctctagaactatacccttgtaaaagtattcattgtgct |
103 |
Q |
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| T |
4855711 |
ccaatttgagaagggatgacacctgttaggttattccatgataaatccaatccagtcatattctctagaactttacccttgtaaaagtattcatagtgct |
4855810 |
T |
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| Q |
104 |
ttgttctgaactccacttccaagtgtag |
131 |
Q |
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| T |
4855811 |
ttgttctgaactccacttcaaattgtag |
4855838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 5161376 - 5161228
Alignment:
| Q |
4 |
ccaatttgagaagggatgacacctgttaggttattgcatgataaatccaatccagtcatattctctagaactatacccttgtaaaagtattcattgtgct |
103 |
Q |
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|
||||||||||||||||| ||||||||| || |||||||||||||||||||||||||| |||||||| ||| |||| ||||||||||| |||||||||| |
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| T |
5161376 |
ccaatttgagaagggatagtacctgttagcttgttgcatgataaatccaatccagtcattttctctaggactttacctttgtaaaagtaatcattgtgct |
5161277 |
T |
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| Q |
104 |
ttgttctgaactccacttccaagtgtagttcgccatgagatgattcaaa |
152 |
Q |
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| T |
5161276 |
ttgttctgaactccacttccaagtgtagttcgccatgagataattcaaa |
5161228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 5215203 - 5215088
Alignment:
| Q |
4 |
ccaatttgagaagggatgacacctgttaggttattgcatgataaatccaatccagtcatattctctagaactatacccttgtaaaagtattcattgtgct |
103 |
Q |
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|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
5215203 |
ccaatttgagaagggatgagacctgttaggttattccatgataaatccaatccagtcatattctctagaactttacccttgtaaaagtattcatagtgct |
5215104 |
T |
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| Q |
104 |
ttgttctgaactccac |
119 |
Q |
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|||||||||||||||| |
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| T |
5215103 |
ttgttctgaactccac |
5215088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 4841202 - 4841332
Alignment:
| Q |
1 |
tctccaatttgagaagggatgacacctgttaggttattgcatgataaatccaatccagtcatattctctagaactatacccttgtaaaagtattcattgt |
100 |
Q |
| |
|
||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
4841202 |
tctccaatttgggaagggataacacctgttaaattattgcatgataaatccaatccagtcataatctctagaactttacccttgtaaaagtattcattgt |
4841301 |
T |
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| Q |
101 |
gctttgttctgaactccacttccaagtgtag |
131 |
Q |
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|||||||||| ||||||||||| || ||||| |
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| T |
4841302 |
gctttgttctaaactccacttcaaattgtag |
4841332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 5183662 - 5183541
Alignment:
| Q |
1 |
tctccaatttgagaagggatgacacctgttaggttattgcatgataaatccaatccagtcatattctctagaactatacccttgtaaaagtattcattgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||| || |
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| T |
5183662 |
tctccaatttgagaagggatgacacctgttagcttattgcatgataaatccaatccagtcatgatctttagaactatacccttgtaaaagtaatcatagt |
5183563 |
T |
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| Q |
101 |
gctttgttctgaactccacttc |
122 |
Q |
| |
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|||||||||| |||| |||||| |
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| T |
5183562 |
gctttgttctaaactgcacttc |
5183541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 7143525 - 7143411
Alignment:
| Q |
1 |
tctccaatttgagaagggatgacacctgttaggttattgcatgataaatccaatccagtcatattctctagaactatacccttgtaaaagtattcattgt |
100 |
Q |
| |
|
||||||| || |||||| ||||| | |||| | |||||||||||||||||||||||||||| ||||||| | | || | | ||||||||| |||| || |
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| T |
7143525 |
tctccaagttcagaaggtatgactctagttacgatattgcatgataaatccaatccagtcatcatctctaggattttagcgtcgtaaaagtactcatagt |
7143426 |
T |
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| Q |
101 |
gctttgttctgaact |
115 |
Q |
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||||||||| |||| |
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| T |
7143425 |
tctttgttctaaact |
7143411 |
T |
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