View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6082_low_5 (Length: 674)

Name: NF6082_low_5
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6082_low_5
NF6082_low_5
[»] chr1 (7 HSPs)
chr1 (1-666)||(25985506-25986170)
chr1 (205-666)||(18238946-18239407)
chr1 (397-666)||(34575654-34575923)
chr1 (320-394)||(34576110-34576184)
chr1 (212-264)||(45046310-45046362)
chr1 (212-264)||(45567350-45567402)
chr1 (211-271)||(50890245-50890305)
[»] chr3 (4 HSPs)
chr3 (211-666)||(12716057-12716512)
chr3 (584-660)||(42711288-42711364)
chr3 (211-267)||(26982696-26982752)
chr3 (206-265)||(3733901-3733960)
[»] chr2 (5 HSPs)
chr2 (206-660)||(31074361-31074814)
chr2 (204-655)||(9676710-9677161)
chr2 (201-666)||(35740291-35740755)
chr2 (203-271)||(24167086-24167154)
chr2 (206-267)||(16414015-16414076)
[»] chr4 (5 HSPs)
chr4 (211-666)||(35421500-35421955)
chr4 (211-531)||(53667625-53667944)
chr4 (557-666)||(53667944-53668053)
chr4 (212-270)||(42660144-42660202)
chr4 (233-271)||(17646923-17646961)
[»] chr6 (1 HSPs)
chr6 (211-666)||(10900768-10901223)
[»] chr8 (4 HSPs)
chr8 (252-666)||(5196836-5197238)
chr8 (206-343)||(31382313-31382451)
chr8 (569-666)||(31382450-31382547)
chr8 (226-291)||(26881144-26881209)
[»] chr7 (1 HSPs)
chr7 (322-666)||(5640758-5641102)
[»] chr5 (1 HSPs)
chr5 (233-271)||(1711585-1711623)


Alignment Details
Target: chr1 (Bit Score: 538; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 666
Target Start/End: Original strand, 25985506 - 25986170
Alignment:
Q  1 accacttcaaattttctgattctcccagattcagcttctccatctcatttgttatttacttcttcaaaccttcatttgcttgttctttgttaagtttctt 100  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||    
T  25985506 accactccaaattttctaattctcccagattcagcttctccatctcatttgttatttacttcttcaaaccctcatttgcttcttctttgttaagtttgtt 25985605  T
Q  101 tgcatatttgaagagaaaaatggtaaaatttcaaaaaattgtgataaggtctttctatgtttctaatttctcctgtgatagtgttacgaatagaccatag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  25985606 tgcatatttgaagagaaaaatggtaaaatttcaaaaaattgtgataaggtcttcctatgtttctaatttctcctatgatagtgttacgaatagaccatag 25985705  T
Q  201 ttttaagagcgttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccctgttagtacttttcggattttaaaatccaga 300  Q
    ||||||||| |||| ||||| |||||||||||||||||||||| |||| |||||||| |||||||||  |||||||||||| |||||||||||||||| |    
T  25985706 ttttaagagtgttatttttcccatcctactgtcttctcacgcgtcctgcaaaaattttaaaaatacct-tgttagtactttccggattttaaaatccaaa 25985804  T
Q  301 caaaatcaatatgacaagggcctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatatccctgttt 400  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25985805 caaaatcgatatgacaagggcctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatacccctgttt 25985904  T
Q  401 gtcattctctaacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaataatttgat 500  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||    
T  25985905 gtcattctctaacaaaggctttgtaagatcttccaaactgttgctactctttagtgttgctgtaccataggaacttactggtggtactaaagaatctgat 25986004  T
Q  501 ggtttactagttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgagctggaccataacttgaggtgcttgcactagcttccgacacag 600  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||    
T  25986005 ggtttactagttggtgcttgagtagattcaacactcttaggtttatgttgtttgttagctggatcataatttgaggtgcttgcactagcttccgacacag 25986104  T
Q  601 cttttgctccactagaagattgattattgatattaatcgaagtggaagtttcattcctatattctt 666  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  25986105 cttttgctccactagaagattgattattgatattaatcgaagtggaagtctcattcctattttctt 25986170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 205 - 666
Target Start/End: Complemental strand, 18239407 - 18238946
Alignment:
Q  205 aagagcgttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccctgttagtacttttcggattttaaaatccagacaaa 304  Q
    ||||| |||||||||| || ||||||||||||| || | ||||| ||||||| ||||||||||||||||||| |||| ||||||||||||||| || |||    
T  18239407 aagagtgttacttttcccaccctactgtcttctaacacaccctgcaaaaattccaaaaatacccctgttagtgctttccggattttaaaatccggataaa 18239308  T
Q  305 atcaatatgacaagggcctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatatccctgtttgtca 404  Q
    ||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  18239307 atcgatatgacaagggtctgctcttttcttcaatatgacgctttttctcttccaatttctcccccatcttcttccccaaatcaaatacccctgtttgtca 18239208  T
Q  405 ttctctaacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaataatttgatggtt 504  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||    
T  18239207 ttctctaacaaaggctttgtaagatcttccaaactgttgctactctttagtgttgttgtaccagaggaacttactggtggtactaaagaatctgatggtt 18239108  T
Q  505 tactagttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgagctggaccataacttgaggtgcttgcactagcttccgacacagcttt 604  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||  ||||||    
T  18239107 tactagttggtgcttgagtagattctacactcttaggtttttgttgtttgttagctggaccataacttgaggtgcttgcactagcatccgacctagcttt 18239008  T
Q  605 tgctccactagaagattgattattgatattaatcgaagtggaagtttcattcctatattctt 666  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||    
T  18239007 tgctccactagaagattgattattggtattaatcgaagtggaagtctcattcctattttctt 18238946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 397 - 666
Target Start/End: Complemental strand, 34575923 - 34575654
Alignment:
Q  397 gtttgtcattctctaacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaataatt 496  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||| ||| |||||||||| |||||||| |||||||| |||     
T  34575923 gtttgtcattctctaacaaaggctttgtaagatcttccaaactgttgctgctctttagtgttcctgcaccagaggaatttactggtagtactaaagaatc 34575824  T
Q  497 tgatggtttactagttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgagctggaccataacttgaggtgcttgcactagcttccgac 596  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34575823 tgatgatttactagttggtgcttgagtagattcaacactcttaggtttttgttgtttgttagctggaccataacttgaggtgcttgcactagcttccgac 34575724  T
Q  597 acagcttttgctccactagaagattgattattgatattaatcgaagtggaagtttcattcctatattctt 666  Q
      ||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| |||||    
T  34575723 ctagcttttgctccactagaagattgattattggtgttaatcgaagtggaagtctcattcctattttctt 34575654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 320 - 394
Target Start/End: Complemental strand, 34576184 - 34576110
Alignment:
Q  320 gcctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatatcc 394  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34576184 gcctgctcttttcttcaagatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaacatcc 34576110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 45046310 - 45046362
Alignment:
Q  212 ttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaat 264  Q
    ||||||||| || ||||| |||||||| |||||||||||||| || |||||||    
T  45046310 ttacttttcccaccctacggtcttctcccgcgccctgtaaaatttccaaaaat 45046362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 45567350 - 45567402
Alignment:
Q  212 ttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaat 264  Q
    ||||||||  ||||||||  |||||||| ||||||||||||| ||||||||||    
T  45567350 ttactttttccatcctacgatcttctcatgcgccctgtaaaattttcaaaaat 45567402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 50890245 - 50890305
Alignment:
Q  211 gttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccctg 271  Q
    ||||||||||  | ||| ||| |||||||| ||||||| ||||||||||||||||| ||||    
T  50890245 gttacttttcctaccctgctgccttctcacacgccctgcaaaaatttcaaaaatactcctg 50890305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 211 - 666
Target Start/End: Original strand, 12716057 - 12716512
Alignment:
Q  211 gttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccctgttagtacttttcggattttaaaatccagacaaaatcaat 310  Q
    |||||||||| || ||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| | ||||||||||||| || |||||| ||    
T  12716057 gttacttttcccaccctactgtcttcttacgcgccctgcaaaaatttcaaaaatacccctgttagtgctttccagattttaaaatccggataaaatcgat 12716156  T
Q  311 atgacaagggcctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatatccctgtttgtcattctct 410  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  12716157 atgacaagggtcagctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatacccctgtttttcattctct 12716256  T
Q  411 aacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaataatttgatggtttactag 510  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||    
T  12716257 aacaaaggctttgtaagatcttccaaactgttgctactctttagtgttgctgtaccagagaaacttactggtggtactaaagaatatgatggtttactag 12716356  T
Q  511 ttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgagctggaccataacttgaggtgcttgcactagcttccgacacagcttttgctcc 610  Q
    ||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  12716357 ttggtgcttgagtagattcaacactcttaggtttttattgtttgttagctggaccataacttgaggtgcttgcactagcttccgacacaacttttgctca 12716456  T
Q  611 actagaagattgattattgatattaatcgaagtggaagtttcattcctatattctt 666  Q
    | ||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  12716457 attagaagattgattattgatattaatcgaagtggaagtctcattcctattttctt 12716512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 584 - 660
Target Start/End: Complemental strand, 42711364 - 42711288
Alignment:
Q  584 actagcttccgacacagcttttgctccactagaagattgattattgatattaatcgaagtggaagtttcattcctat 660  Q
    |||||||||||||  |||| |||||||||||||||||||||||||| || |||||||||||||||| ||||||||||    
T  42711364 actagcttccgacctagctcttgctccactagaagattgattattggtaataatcgaagtggaagtctcattcctat 42711288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 26982752 - 26982696
Alignment:
Q  211 gttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacc 267  Q
    |||||||||  || |||||||||||||||||||||||  ||||||||||||||||||    
T  26982752 gttactttttacaccctactgtcttctcacgcgccctacaaaaatttcaaaaatacc 26982696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 265
Target Start/End: Complemental strand, 3733960 - 3733901
Alignment:
Q  206 agagcgttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaata 265  Q
    |||| |||||||||| ||| ||||||  ||||||||||| ||| ||||||||||||||||    
T  3733960 agagtgttacttttcccattctactgcattctcacgcgctctgcaaaaatttcaaaaata 3733901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 206 - 660
Target Start/End: Original strand, 31074361 - 31074814
Alignment:
Q  206 agagcgttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccctgttagtacttttcggattttaaaatccagacaaaa 305  Q
    |||| |||||||||| ||||||||||||||||||||| ||||| |||| || ||||||||||||||||||| |||| ||||||||||||||| |||||||    
T  31074361 agagtgttacttttcccatcctactgtcttctcacgcaccctgcaaaa-ttccaaaaatacccctgttagtgctttccggattttaaaatccggacaaaa 31074459  T
Q  306 tcaatatgacaagggcctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatatccctgtttgtcat 405  Q
    || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||    
T  31074460 tcgatatgacaagggtctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaaacaaatacctctgtttgtcat 31074559  T
Q  406 tctctaacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaataatttgatggttt 505  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| |    
T  31074560 tctctaacaaaggctttgtaagatcttccaaactgttgctactctttagtgttgctataccagaggaacttactggtggtactaaagaatctgatggtgt 31074659  T
Q  506 actagttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgagctggaccataacttgaggtgcttgcactagcttccgacacagctttt 605  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||    
T  31074660 actagttggtgcttgagtagattcaacactcttaggtttttgttgtttgttagctggaccataacttgaggtgcttgcactagcttccgacctagctttt 31074759  T
Q  606 gctccactagaagattgattattgatattaatcgaagtggaagtttcattcctat 660  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  31074760 gctccactagaagattgattattggtattaatcgaagtggaagtctcattcctat 31074814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 204 - 655
Target Start/End: Complemental strand, 9677161 - 9676710
Alignment:
Q  204 taagagcgttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccctgttagtacttttcggattttaaaatccagacaa 303  Q
    |||||| |||||||||| || |||||||||||||||||||||||| |||||||| ||||||||||||||||||  ||| | ||||||||||||  |||||    
T  9677161 taagagtgttacttttcccaccctactgtcttctcacgcgccctgcaaaaattttaaaaatacccctgttagtgttttcctgattttaaaatctggacaa 9677062  T
Q  304 aatcaatatgacaagggcctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatatccctgtttgtc 403  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9677061 aatcgatatgacaagggcctgcttttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatatccctgtttttc 9676962  T
Q  404 attctctaacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaataatttgatggt 503  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| |||||||    
T  9676961 attctctaacaaaggctttgtaagatcttccaaactgttgctactctttagtgttgttgttccagaggaacttactggtggtactaaagaatctgatggt 9676862  T
Q  504 ttactagttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgagctggaccataacttgaggtgcttgcactagcttccgacacagctt 603  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||    
T  9676861 ttactagttggtgtttgagtagattcaacactcttaggtttttgttgtttgttagctggaccataacttgaggtgcttgcgctagcttccgacacagatt 9676762  T
Q  604 ttgctccactagaagattgattattgatattaatcgaagtggaagtttcatt 655  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  9676761 ttgctccactagaagattgattattgatattaatccaagtggaagtctcatt 9676710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 201 - 666
Target Start/End: Complemental strand, 35740755 - 35740291
Alignment:
Q  201 ttttaagagcgttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccctgttagtacttttcggattttaaaatccaga 300  Q
    |||||| || |||||||||| || |||||||||||||||||||||||| |||| |||||||||||||| ||||||| |||||| ||||||| ||||| ||    
T  35740755 ttttaaaagtgttacttttcccaccctactgtcttctcacgcgccctgcaaaagtttcaaaaatacccatgttagtgcttttcagattttagaatccgga 35740656  T
Q  301 caaaatcaatatgacaagggcctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatatccctgttt 400  Q
    ||||||| |||||||||||| ||||| ||||||||||||||||| ||||  |||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  35740655 caaaatcgatatgacaagggtctgctgttttcttcaatatgacgtcttta-tcttccaatttctccctcatcttcttcctcaaatcaaatacccctgttt 35740557  T
Q  401 gtcattctctaacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaataatttgat 500  Q
    |||||||||||||||||| ||||||||||||| |||| |||| ||||| |||||||||||||||||| ||||||||||||||||||||||| ||| ||||    
T  35740556 gtcattctctaacaaaggctttgtaagatctttcaaactgttactactttttagtgttgctgtaccataggaacttactggtggtactaaagaatctgat 35740457  T
Q  501 ggtttactagttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgagctggaccataacttgaggtgcttgcactagcttccgacacag 600  Q
    || |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||  ||    
T  35740456 ggattactagttggtgcttgagtagattcaacactcttaggtttttgttgtttgttagctggaccataacttgaggtgcatgcactagcttccaacctag 35740357  T
Q  601 cttttgctccactagaagattgattattgatattaatcgaagtggaagtttcattcctatattctt 666  Q
    |||||||||||| |||||||||||||||| |||||||| |||||||||| |||||||||| |||||    
T  35740356 cttttgctccacaagaagattgattattggtattaatcaaagtggaagtctcattcctattttctt 35740291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 24167086 - 24167154
Alignment:
Q  203 ttaagagcgttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccctg 271  Q
    |||||||  ||||||||| ||  || ||| ||||||||||| |||| ||||||||||||||||||||||    
T  24167086 ttaagagtattacttttcccactctgctgccttctcacgcgtcctgcaaaaatttcaaaaatacccctg 24167154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 267
Target Start/End: Original strand, 16414015 - 16414076
Alignment:
Q  206 agagcgttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacc 267  Q
    |||| |||| ||||| || ||| ||||||||||||||||| || ||||||| ||||||||||    
T  16414015 agagtgttatttttcccaccctgctgtcttctcacgcgccttgcaaaaattccaaaaatacc 16414076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 211 - 666
Target Start/End: Complemental strand, 35421955 - 35421500
Alignment:
Q  211 gttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccctgttagtacttttcggattttaaaatccagacaaaatcaat 310  Q
    |||||||||  || |||||||||||||||||||   || ||||||| ||||||||   |||||||| |||||||||||||||||| | ||||||||| ||    
T  35421955 gttactttttccaccctactgtcttctcacgcgttttgcaaaaattccaaaaatatatctgttagtgcttttcggattttaaaattcggacaaaatcgat 35421856  T
Q  311 atgacaagggcctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatatccctgtttgtcattctct 410  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  35421855 atgacaagggtctgctcttttcttcaatatgacgccttttctcttccaatttctcctccatcttcttcctcaaatcaaatagccctgtttgtcattctct 35421756  T
Q  411 aacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaataatttgatggtttactag 510  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  35421755 aacaaaggctttgtaagatcttccaaactgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaagaatctgatggtttactag 35421656  T
Q  511 ttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgagctggaccataacttgaggtgcttgcactagcttccgacacagcttttgctcc 610  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||  | ||||||||||    
T  35421655 ttggtgcttgagtagattcaacactcttaggtttttgttgtttgttagctgaaccataacttgaggtgcttgcactagcttccgacctaacttttgctcc 35421556  T
Q  611 actagaagattgattattgatattaatcgaagtggaagtttcattcctatattctt 666  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||||||| |||||    
T  35421555 actagaagattgattattggtgttaatcgaagtggaagtctcattcctattttctt 35421500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 211 - 531
Target Start/End: Original strand, 53667625 - 53667944
Alignment:
Q  211 gttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccctgttagtacttttcggattttaaaatccagacaaaatcaat 310  Q
    ||||||| || || ||||||||||||| |||||||||| |||| ||| |||||||||| ||||||| |||| ||||||||||||||||||||||||| |     
T  53667625 gttacttatcccaccctactgtcttcttacgcgccctgcaaaatttt-aaaaatacccttgttagtgctttccggattttaaaatccagacaaaatcgac 53667723  T
Q  311 atgacaagggcctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatatccctgtttgtcattctct 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||     
T  53667724 atgacaagggcctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatacccctgtttatcattctcc 53667823  T
Q  411 aacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaataatttgatggtttactag 510  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||    
T  53667824 aacaaaggctttgtaagatcttccaaactgttgctactctttagtgttgctgtaccagtggaacttactggtggtactaaagaatctgatggtttactag 53667923  T
Q  511 ttgatgcttgagtagattcaa 531  Q
    ||| |||||||||||||||||    
T  53667924 ttggtgcttgagtagattcaa 53667944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 557 - 666
Target Start/End: Original strand, 53667944 - 53668053
Alignment:
Q  557 agctggaccataacttgaggtgcttgcactagcttccgacacagcttttgctccactagaagattgattattgatattaatcgaagtggaagtttcattc 656  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  53667944 agctggaccataacttgaggtgcttgcactagcttccgacacagcttttgctccactagaagattgattattgatattaatcgaagtggaagtctcattc 53668043  T
Q  657 ctatattctt 666  Q
    |||| |||||    
T  53668044 ctattttctt 53668053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 42660144 - 42660202
Alignment:
Q  212 ttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccct 270  Q
    ||||||||| || |||| || |||||| |||||||||||||| ||||||||||||||||    
T  42660144 ttacttttcccaccctattgccttctcgcgcgccctgtaaaattttcaaaaatacccct 42660202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 233 - 271
Target Start/End: Original strand, 17646923 - 17646961
Alignment:
Q  233 cttctcacgcgccctgtaaaaatttcaaaaatacccctg 271  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  17646923 cttctcacgcgccctgcaaaaatttcaataatacccctg 17646961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 211 - 666
Target Start/End: Original strand, 10900768 - 10901223
Alignment:
Q  211 gttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccctgttagtacttttcggattttaaaatccagacaaaatcaat 310  Q
    |||||||||| |||| |||||||||||||||||| ||  | |||||||||||||| |  ||||||| |||||||||||||||||||| ||||||||| ||    
T  10900768 gttacttttcccatcatactgtcttctcacgcgctctacagaaatttcaaaaatatctttgttagtgcttttcggattttaaaatccggacaaaatcgat 10900867  T
Q  311 atgacaagggcctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatatccctgtttgtcattctct 410  Q
    |||||||||| || |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  10900868 atgacaagggtctactcttttcttcaatatgatgctttttctcttccaatttctcccccatcttcttcctcaaatcaaatactcctgtttgtcattctct 10900967  T
Q  411 aacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaataatttgatggtttactag 510  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  10900968 aacaaaggttttgtaagatcttccaaactgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaagaatctgatggtttactag 10901067  T
Q  511 ttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgagctggaccataacttgaggtgcttgcactagcttccgacacagcttttgctcc 610  Q
    ||| | |||||||| ||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||    
T  10901068 ttggttcttgagtaaattcaacactcttagatttttattgtttgttagctggaccataacttgaggtgcttgcactaacttccgacctagcttttgctcc 10901167  T
Q  611 actagaagattgattattgatattaatcgaagtggaagtttcattcctatattctt 666  Q
    ||||||||||||||||||  ||||||||||||||||||| |||||||||| |||||    
T  10901168 actagaagattgattattagtattaatcgaagtggaagtctcattcctattttctt 10901223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 302; Significance: 1e-169; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 252 - 666
Target Start/End: Complemental strand, 5197238 - 5196836
Alignment:
Q  252 aaatttcaaaaatacccctgttagtacttttcggattttaaaatccagacaaaatcaatatgacaagggcctgctcttttcttcaatatgacgccttttc 351  Q
    ||||||||||||||||||||||||| |||| |||||||            |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5197238 aaatttcaaaaatacccctgttagtgctttccggattt------------aaaatcaatatgacaagggcatgctcttttcttcaatatgacgccttttc 5197151  T
Q  352 tcttccaatttctcccccatcttcttcctcaaatcaaatatccctgtttgtcattctctaacaaaggttttgtaagatcttccaaattgttgctactctt 451  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  5197150 tcttccaatttctcccccatcttcttcctcaaatcaaatacccctgtttgtcattctctaacaaaggctttgtaagatcttccaaactgttgctactctt 5197051  T
Q  452 tagtgttgctgtaccagaggaacttactggtggtactaaataatttgatggtttactagttgatgcttgagtagattcaacactcttaggtttttgttgt 551  Q
    |||||||| ||||||| |||||||||||| |||||||||| ||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  5197050 tagtgttgttgtaccaaaggaacttactgatggtactaaagaatctgatggtttactagttggtgcttgagaagattcaacactcttaggtttttgttgt 5196951  T
Q  552 ttgtgagctggaccataacttgaggtgcttgcactagcttccgacacagcttttgctccactagaagattgattattgatattaatcgaagtggaagttt 651  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5196950 ttgttagctggaccataacttgaggtgcttgcactagctttcgacacagcttttgctccactagaagattgattattgatattaatcgaagtggaagtct 5196851  T
Q  652 cattcctatattctt 666  Q
    ||||| ||| |||||    
T  5196850 cattcatattttctt 5196836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 206 - 343
Target Start/End: Original strand, 31382313 - 31382451
Alignment:
Q  206 agagcgttacttttctcatcctactgtcttctcacgcgccctgtaaaaatttcaaaa-atacccctgttagtacttttcggattttaaaatccagacaaa 304  Q
    |||| |||||||||  || ||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||| || |||||||||||| ||||||    
T  31382313 agagtgttactttttccaccctactgtcttctcacgcgccctgtaaaaatttaaaaaaatacccctgttagtgctttccgaattttaaaatccggacaaa 31382412  T
Q  305 atcaatatgacaagggcctgctcttttcttcaatatgac 343  Q
    ||| |||||||||||| | ||||||||||||||||||||    
T  31382413 atcgatatgacaagggtcagctcttttcttcaatatgac 31382451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 569 - 666
Target Start/End: Original strand, 31382450 - 31382547
Alignment:
Q  569 acttgaggtgcttgcactagcttccgacacagcttttgctccactagaagattgattattgatattaatcgaagtggaagtttcattcctatattctt 666  Q
    ||||||||||||||||||| ||||||||  |||| |||||||||||||||||| ||||||| |||||||||||||| |||| |||||||||| |||||    
T  31382450 acttgaggtgcttgcactaacttccgacctagctcttgctccactagaagatttattattggtattaatcgaagtgaaagtctcattcctattttctt 31382547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 26881144 - 26881209
Alignment:
Q  226 ctactgtcttctcacgcgccctgtaaaaatttcaaaaatacccctgttagtacttttcggatttta 291  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||    
T  26881144 ctactgtcttctcacgcgccctgcaaaaatttcaaaaatacccctgttagtgcttttcagatttta 26881209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 322 - 666
Target Start/End: Complemental strand, 5641102 - 5640758
Alignment:
Q  322 ctgctcttttcttcaatatgacgccttttctcttccaatttctcccccatcttcttcctcaaatcaaatatccctgtttgtcattctctaacaaaggttt 421  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||    
T  5641102 ctgctcttttcttcaatatgacgtcttttctcttccaatttctcccccatcttcttcctcaaatcaaatacccatgtttgtcattctctaacaaaggctt 5641003  T
Q  422 tgtaagatcttccaaattgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaataatttgatggtttactagttgatgcttga 521  Q
    |||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | ||||||||||||||| |||||||    
T  5641002 tgtaagatcttccaaactcttgctactctttagtgttgttgtaccagaggaacttactggtggtactaaagaatctaatggtttactagttggtgcttga 5640903  T
Q  522 gtagattcaacactcttaggtttttgttgtttgtgagctggaccataacttgaggtgcttgcactagcttccgacacagcttttgctccactagaagatt 621  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||| ||||||    
T  5640902 gtagattcaacactcttagctttttgttgtttgttagctggaccataacttgaggtgcttgcactagcttccgacctagctttttctccactaaaagatt 5640803  T
Q  622 gattattgatattaatcgaagtggaagtttcattcctatattctt 666  Q
    | |||||| ||||||||||||||||||| |||||||||| |||||    
T  5640802 ggttattggtattaatcgaagtggaagtctcattcctattttctt 5640758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 1711623 - 1711585
Alignment:
Q  233 cttctcacgcgccctgtaaaaatttcaaaaatacccctg 271  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  1711623 cttctcacgcgccctgcaaaaatttcataaatacccctg 1711585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University