View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6082_low_51 (Length: 220)
Name: NF6082_low_51
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6082_low_51 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 28341286 - 28341095
Alignment:
| Q |
14 |
gagatgaatcttcaaactttggaacgtgaacggaattgagcaactcaaggagactgttaggtcttgaattgtggccgttcttgttgttagcacgaacagg |
113 |
Q |
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| T |
28341286 |
gagatgaatcttcaaattttggaacgtgaacggaattgagcaactcaaagagactgtaagatcttgaattgtggccgttcttgttgttagcacgaacagg |
28341187 |
T |
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| Q |
114 |
gaagaggaagagcctcaatcttaccggctgctttggagaagcgcgacacatacgatcatactcgaccatcatattttcgagatcatcatcgt |
205 |
Q |
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| T |
28341186 |
gaagaggaaaagcctcaatcttaccggctgctttggagaagcgcgacacatacgatcatactcgaccatcatattttcgagatcatcatcgt |
28341095 |
T |
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