View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6082_low_7 (Length: 470)

Name: NF6082_low_7
Description: NF6082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6082_low_7
NF6082_low_7
[»] chr1 (12 HSPs)
chr1 (18-460)||(47436457-47436901)
chr1 (275-321)||(39940567-39940613)
chr1 (216-282)||(11864682-11864750)
chr1 (209-328)||(36141680-36141800)
chr1 (275-321)||(2492557-2492603)
chr1 (270-320)||(27545396-27545446)
chr1 (288-321)||(33939391-33939424)
chr1 (276-321)||(43929431-43929476)
chr1 (270-302)||(4540696-4540728)
chr1 (273-329)||(10506297-10506353)
chr1 (268-308)||(26545027-26545067)
chr1 (273-328)||(44746653-44746709)
[»] chr3 (14 HSPs)
chr3 (209-298)||(52532696-52532787)
chr3 (205-331)||(1755866-1755995)
chr3 (275-321)||(21970514-21970560)
chr3 (275-321)||(21992950-21992996)
chr3 (288-321)||(336079-336112)
chr3 (284-321)||(24596904-24596941)
chr3 (270-321)||(39836941-39836992)
chr3 (264-313)||(21730147-21730196)
chr3 (288-321)||(38677578-38677611)
chr3 (288-321)||(41743684-41743717)
chr3 (276-313)||(54087483-54087520)
chr3 (275-303)||(22405122-22405150)
chr3 (268-308)||(29019765-29019805)
chr3 (275-319)||(47334723-47334767)
[»] chr5 (14 HSPs)
chr5 (210-296)||(37321302-37321389)
chr5 (209-321)||(1098641-1098754)
chr5 (270-322)||(1100069-1100121)
chr5 (270-321)||(13391544-13391595)
chr5 (275-321)||(15968328-15968374)
chr5 (272-321)||(892564-892613)
chr5 (269-322)||(7613433-7613486)
chr5 (288-321)||(26141768-26141801)
chr5 (268-321)||(36897755-36897808)
chr5 (284-321)||(40515240-40515277)
chr5 (273-321)||(6834043-6834091)
chr5 (270-302)||(17768042-17768074)
chr5 (270-302)||(22398121-22398153)
chr5 (270-302)||(41527008-41527040)
[»] chr7 (11 HSPs)
chr7 (226-323)||(48872972-48873070)
chr7 (286-322)||(30138880-30138916)
chr7 (278-321)||(28949285-28949328)
chr7 (270-321)||(41850613-41850664)
chr7 (276-321)||(4826779-4826824)
chr7 (268-321)||(9555334-9555387)
chr7 (275-320)||(22752574-22752619)
chr7 (276-321)||(27231919-27231964)
chr7 (268-321)||(37101708-37101761)
chr7 (270-302)||(28038575-28038607)
chr7 (262-302)||(41247908-41247948)
[»] chr8 (12 HSPs)
chr8 (274-315)||(9793444-9793485)
chr8 (276-330)||(18959245-18959299)
chr8 (263-321)||(38414295-38414353)
chr8 (286-321)||(7258677-7258712)
chr8 (270-321)||(8793736-8793787)
chr8 (276-321)||(2296556-2296601)
chr8 (276-321)||(12958793-12958838)
chr8 (276-321)||(35011229-35011274)
chr8 (276-321)||(42786381-42786426)
chr8 (276-321)||(44796359-44796404)
chr8 (270-302)||(2627206-2627238)
chr8 (273-321)||(6197905-6197953)
[»] chr2 (8 HSPs)
chr2 (270-321)||(28249013-28249064)
chr2 (270-321)||(5109380-5109431)
chr2 (270-321)||(12873740-12873791)
chr2 (276-321)||(5528173-5528218)
chr2 (288-321)||(26234118-26234151)
chr2 (268-321)||(31102023-31102076)
chr2 (268-321)||(41153189-41153242)
chr2 (276-321)||(45034415-45034460)
[»] scaffold0294 (1 HSPs)
scaffold0294 (284-321)||(13002-13039)
[»] chr4 (12 HSPs)
chr4 (270-329)||(26254559-26254617)
chr4 (270-321)||(53225724-53225775)
chr4 (275-321)||(44755510-44755556)
chr4 (276-321)||(20459326-20459371)
chr4 (268-321)||(39993116-39993169)
chr4 (276-321)||(42804273-42804318)
chr4 (276-321)||(43020773-43020818)
chr4 (276-321)||(47866053-47866098)
chr4 (288-321)||(49481893-49481926)
chr4 (273-321)||(5656512-5656560)
chr4 (273-321)||(37895338-37895386)
chr4 (270-302)||(51313542-51313574)
[»] chr6 (5 HSPs)
chr6 (284-321)||(1302760-1302797)
chr6 (288-321)||(31398320-31398353)
chr6 (270-302)||(7055591-7055623)
chr6 (273-321)||(30438760-30438808)
chr6 (268-308)||(31971108-31971148)


Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Complemental strand, 47436901 - 47436457
Alignment:
Q  18 cctctccctaatggcaagcaaaggaaacaattgagttgtgagctaggtcttacaccgacgcaaatcaagttctggtttcaaaacaagcgcaaccaaatta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  47436901 cctctccctaatggcaagcaaaggaaacaattgagttgtgagctaggccttacacctgcgcaaatcaagttctagtttcaaaacaagcgcaaccaaatta 47436802  T
Q  118 aggtaaaggattatgaaaaccctattgaaatgtgagatcttacatgcatggtgaacccttaaaaataaatgtgtatttcctctggtctcagttataaaca 217  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47436801 aggtaaaggattatgaaaaccctattgaaatttgagatcttacatgcacggtgaacccttaaaaataaatgtgtatttcctctggtctcggttataaaca 47436702  T
Q  218 aaagtttattttttaattcattcaatgactaatgtattagatcgtaatacaaaccaaatacattaattattgaatgaatctaaaatgtaaacttttactt 317  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||  |||||||||||||||| |||||||||||||||||    
T  47436701 aaagtttattttttaattcattcaatgactaatgtattaggtcgtaatacagaccaaatacattggttattgaatgaatctacaatgtaaacttttactt 47436602  T
Q  318 ataactgagactgatggactacgtctttaaattttattgttagaacattaatgtattttcattttggttac--aaagagattgaagtacgcacactttgg 415  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||    
T  47436601 ataactgagaccgatggactacgtctttaaattttattgttagaacattaatgtattttcattttggttacaaaaacagattgaagtacgcacactttgg 47436502  T
Q  416 attgatgtaaataaaaaatatattgtatcattataatttgatgat 460  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  47436501 attgatgtaaataaaaaatatattgtatcattataatttgatgat 47436457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 321
Target Start/End: Original strand, 39940567 - 39940613
Alignment:
Q  275 atacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||||||| ||||||||||||||||||| ||||| ||||||||||||    
T  39940567 atacattatttattgaatgaatctaaaaagtaaatttttacttataa 39940613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 282
Target Start/End: Original strand, 11864682 - 11864750
Alignment:
Q  216 caaaagtttatttttt-aattcattcaatgactaatgtattagatc-gtaatacaaaccaaatacatta 282  Q
    |||||||||||||||| |||||||||||||| ||||||||| | || |||||||| | |||||||||||    
T  11864682 caaaagtttattttttgaattcattcaatgattaatgtatttggtctgtaatacataacaaatacatta 11864750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 328
Target Start/End: Complemental strand, 36141800 - 36141680
Alignment:
Q  209 ttataaacaaaagtttattttttaattcattcaatgactaatgtattagatcg-taatacaaaccaaatacattaattattgaatgaatctaaaatgtaa 307  Q
    |||||| |||| ||| | |||| |||||||| ||| | ||||||||| ||||  ||||| | ||||||||||||| ||||| || |||| |||||||| |    
T  36141800 ttataagcaaaggttcacttttaaattcatttaataattaatgtatttgatctataataaagaccaaatacattagttattaaaggaatttaaaatgtta 36141701  T
Q  308 acttttacttataactgagac 328  Q
    | |||| ||||||| ||||||    
T  36141700 atttttgcttataattgagac 36141680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 321
Target Start/End: Original strand, 2492557 - 2492603
Alignment:
Q  275 atacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||||| | |||||||||| ||||||||||||||||||| |||||||    
T  2492557 atacatcatttattgaatggatctaaaatgtaaacttttgcttataa 2492603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 27545396 - 27545446
Alignment:
Q  270 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttata 320  Q
    ||||||||||||| ||||||||||||||||||| || ||||| | ||||||    
T  27545396 accaaatacattagttattgaatgaatctaaaaagtgaacttatgcttata 27545446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 33939391 - 33939424
Alignment:
Q  288 tgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||||||||||||||||||||||||| |||||||    
T  33939391 tgaatgaatctaaaatgtaaacttttgcttataa 33939424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Original strand, 43929431 - 43929476
Alignment:
Q  276 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  43929431 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 43929476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 302
Target Start/End: Original strand, 4540696 - 4540728
Alignment:
Q  270 accaaatacattaattattgaatgaatctaaaa 302  Q
    |||||||||||||| ||||||||||||||||||    
T  4540696 accaaatacattaagtattgaatgaatctaaaa 4540728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 10506297 - 10506353
Alignment:
Q  273 aaatacattaattattgaatgaatctaaaatgtaaacttttacttataactgagact 329  Q
    |||||||| || |||| ||||||||||||| ||||| ||||||||| || |||||||    
T  10506297 aaatacatcaactattcaatgaatctaaaaagtaaaattttacttaaaaatgagact 10506353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 26545067 - 26545027
Alignment:
Q  268 aaaccaaatacattaattattgaatgaatctaaaatgtaaa 308  Q
    ||||||||||||| ||||||| ||||||||||||| |||||    
T  26545067 aaaccaaatacataaattatttaatgaatctaaaaagtaaa 26545027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 328
Target Start/End: Original strand, 44746653 - 44746709
Alignment:
Q  273 aaatacattaattattgaatgaatct-aaaatgtaaacttttacttataactgagac 328  Q
    ||||| |||||||||||||||||||| |||||||||| ||||  |||||| ||||||    
T  44746653 aaatatattaattattgaatgaatctaaaaatgtaaatttttgtttataattgagac 44746709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 209 - 298
Target Start/End: Original strand, 52532696 - 52532787
Alignment:
Q  209 ttataaacaaaagtttatttttta-attcattcaatgactaatgtattagatcg-taatacaaaccaaatacattaattattgaatgaatct 298  Q
    ||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||  ||||| | |||||||| |||||||||||||| |||||    
T  52532696 ttataaacaaaagttcattttttatattcattcaataactaatgtatttgatctataataaagaccaaatatattaattattgaatcaatct 52532787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 331
Target Start/End: Complemental strand, 1755995 - 1755866
Alignment:
Q  205 tcagttataaacaaaagtttattttttaa--ttcattcaatgactaatgtattagatc-gtaatacaaaccaaatacattaattattgaatgaatctaaa 301  Q
    |||||||||| |||||||| ||||||| |  || ||||||| ||||||||||  | || ||| ||   |||||||||||||||||||||||||||||| |    
T  1755995 tcagttataagcaaaagttaatttttttagatttattcaataactaatgtatctggtctgtattatggaccaaatacattaattattgaatgaatctaga 1755896  T
Q  302 atgtaaacttttacttataactgagactga 331  Q
    |  | || |||| || ||||||||||||||    
T  1755895 aaatgaatttttgctgataactgagactga 1755866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 21970560 - 21970514
Alignment:
Q  275 atacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||||| | ||||||||||||| ||||||||||||||||||||||||    
T  21970560 atacatcatttattgaatgaatataaaatgtaaacttttacttataa 21970514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 21992996 - 21992950
Alignment:
Q  275 atacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||||| | ||||||||||||| ||||||||||||||||||||||||    
T  21992996 atacatcatttattgaatgaatataaaatgtaaacttttacttataa 21992950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 336112 - 336079
Alignment:
Q  288 tgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||||||||||||||||||||||||||||||||    
T  336112 tgaatgaatctaaaatgtaaacttttacttataa 336079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 321
Target Start/End: Complemental strand, 24596941 - 24596904
Alignment:
Q  284 ttattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  24596941 ttattgaatgaatctaaaatgtaaatttttacttataa 24596904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 321
Target Start/End: Original strand, 39836941 - 39836992
Alignment:
Q  270 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||| |||||| | ||||||||||||||||||| ||||||||||| ||||||    
T  39836941 accacatacatcatttattgaatgaatctaaaaagtaaacttttatttataa 39836992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 313
Target Start/End: Original strand, 21730147 - 21730196
Alignment:
Q  264 atacaaaccaaatacattaattattgaatgaatctaaaatgtaaactttt 313  Q
    ||||| ||||||||||||||||| ||||| ||||||||| ||||| ||||    
T  21730147 atacagaccaaatacattaattaatgaataaatctaaaaagtaaagtttt 21730196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 38677611 - 38677578
Alignment:
Q  288 tgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||||||||||||||||||||||||| |||||||    
T  38677611 tgaatgaatctaaaatgtaaacttttgcttataa 38677578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 41743684 - 41743717
Alignment:
Q  288 tgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||||||||| |||||||||||||||||||||||    
T  41743684 tgaatgaatccaaaatgtaaacttttacttataa 41743717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 54087483 - 54087520
Alignment:
Q  276 tacattaattattgaatgaatctaaaatgtaaactttt 313  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  54087483 tacattaattattgaatgaatttaaaatgttaactttt 54087520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 303
Target Start/End: Original strand, 22405122 - 22405150
Alignment:
Q  275 atacattaattattgaatgaatctaaaat 303  Q
    |||||||||||||||||||||||||||||    
T  22405122 atacattaattattgaatgaatctaaaat 22405150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 29019805 - 29019765
Alignment:
Q  268 aaaccaaatacattaattattgaatgaatctaaaatgtaaa 308  Q
    ||||||||||||| ||||||| |||| ||||||||||||||    
T  29019805 aaaccaaatacataaattatttaatgtatctaaaatgtaaa 29019765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 47334723 - 47334767
Alignment:
Q  275 atacattaattattgaatgaatctaaaatgtaaacttttacttat 319  Q
    |||||| | ||| ||||||||||||||||||||| ||||||||||    
T  47334723 atacatcatttaatgaatgaatctaaaatgtaaaattttacttat 47334767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 296
Target Start/End: Complemental strand, 37321389 - 37321302
Alignment:
Q  210 tataaacaaaagtttattttttaattcattcaatgactaatgtattagatc-gtaatacaaaccaaatacattaattattgaatgaat 296  Q
    ||||||||||||||||||||| |||| |||| |  ||||||||||| ||||  || | |||||||||||||||| |||||||||||||    
T  37321389 tataaacaaaagtttatttttaaatttattctacaactaatgtatttgatctctattgcaaaccaaatacattagttattgaatgaat 37321302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 321
Target Start/End: Complemental strand, 1098754 - 1098641
Alignment:
Q  209 ttataaacaaaagtttatttttta-attcattcaatgactaatgtat-tagatcgtaatacaaaccaaatacattaattattgaatgaatctaaaatgta 306  Q
    |||||| ||||||||||||||||| ||||||| ||| | |||||||| ||| ||   ||| | |||| |||||| | ||||||||||||||||||| ||     
T  1098754 ttataagcaaaagtttattttttagattcatttaataaataatgtatgtag-tctatatatagaccacatacatcatttattgaatgaatctaaaaagtc 1098656  T
Q  307 aacttttacttataa 321  Q
    |||||||||||||||    
T  1098655 aacttttacttataa 1098641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 322
Target Start/End: Complemental strand, 1100121 - 1100069
Alignment:
Q  270 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataac 322  Q
    |||| |||||| | ||| |||||||||||||||||||||||||| ||||||||    
T  1100121 accacatacatcatttaatgaatgaatctaaaatgtaaacttttgcttataac 1100069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 13391595 - 13391544
Alignment:
Q  270 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||||||||| | ||||||||||||||||||| ||  ||||||||||||||    
T  13391595 accaaatacatcatttattgaatgaatctaaaaagttgacttttacttataa 13391544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 15968374 - 15968328
Alignment:
Q  275 atacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||||||||||||||||||||||||||  | ||||||| |||||||    
T  15968374 atacattaattattgaatgaatctaaaaaattaactttttcttataa 15968328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 892613 - 892564
Alignment:
Q  272 caaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||||||||||||||| ||||||||||||| || || |||| |||||||    
T  892613 caaatacattaattattcaatgaatctaaaaagtgaatttttgcttataa 892564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 7613433 - 7613486
Alignment:
Q  269 aaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataac 322  Q
    |||||||||||| | ||||| ||||||||||||| ||  |||||||||||||||    
T  7613433 aaccaaatacatcatttattaaatgaatctaaaaagttgacttttacttataac 7613486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 26141801 - 26141768
Alignment:
Q  288 tgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||||||||||||||||||||||||| |||||||    
T  26141801 tgaatgaatctaaaatgtaaacttttgcttataa 26141768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 321
Target Start/End: Complemental strand, 36897808 - 36897755
Alignment:
Q  268 aaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||||| |||||| | ||||| ||||||| ||||||||||| ||||||||||||    
T  36897808 aaaccacatacatcatttatttaatgaatttaaaatgtaaatttttacttataa 36897755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 321
Target Start/End: Complemental strand, 40515277 - 40515240
Alignment:
Q  284 ttattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||||||||||||||||| || |||||||||||||||    
T  40515277 ttattgaatgaatctaaaaagtcaacttttacttataa 40515240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 6834091 - 6834043
Alignment:
Q  273 aaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||||||||||||||| |||  |||||||| ||||| ||||||||||||    
T  6834091 aaatacattaattattcaatatatctaaaaagtaaaattttacttataa 6834043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 17768074 - 17768042
Alignment:
Q  270 accaaatacattaattattgaatgaatctaaaa 302  Q
    |||||||||||||| ||||||||||||||||||    
T  17768074 accaaatacattaaatattgaatgaatctaaaa 17768042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 302
Target Start/End: Original strand, 22398121 - 22398153
Alignment:
Q  270 accaaatacattaattattgaatgaatctaaaa 302  Q
    ||||||||||||||||||| |||||||||||||    
T  22398121 accaaatacattaattattcaatgaatctaaaa 22398153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 41527040 - 41527008
Alignment:
Q  270 accaaatacattaattattgaatgaatctaaaa 302  Q
    |||||||||||||| ||||||||||||||||||    
T  41527040 accaaatacattaagtattgaatgaatctaaaa 41527008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 226 - 323
Target Start/End: Original strand, 48872972 - 48873070
Alignment:
Q  226 ttttttaattcattcaatgactaatgtattagatc-gtaatacaaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataact 323  Q
    |||||| ||||||||| | |||||| |||| | || |||||||  ||||||||||||||||||||||||||| |||||  | ||||||| |||||||||    
T  48872972 tttttttattcattcattaactaatatatttggtcagtaataccgaccaaatacattaattattgaatgaatttaaaaattgaacttttgcttataact 48873070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 322
Target Start/End: Original strand, 30138880 - 30138916
Alignment:
Q  286 attgaatgaatctaaaatgtaaacttttacttataac 322  Q
    ||||||||||||||||||||||| |||||||||||||    
T  30138880 attgaatgaatctaaaatgtaaatttttacttataac 30138916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 321
Target Start/End: Complemental strand, 28949328 - 28949285
Alignment:
Q  278 cattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||||| || |||||||||||||| |||||||||||||||||||    
T  28949328 cattaaataatgaatgaatctaaactgtaaacttttacttataa 28949285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 41850664 - 41850613
Alignment:
Q  270 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||||||||||||||||| |||||||||||||  | ||||||| |||||||    
T  41850664 accaaatacattaattattcaatgaatctaaaaaattaactttttcttataa 41850613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 4826824 - 4826779
Alignment:
Q  276 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  4826824 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 4826779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 9555334 - 9555387
Alignment:
Q  268 aaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||||| |||||| | ||| ||||||||||||||||||||| |||| |||||||    
T  9555334 aaaccacatacatcatttaatgaatgaatctaaaatgtaaagttttgcttataa 9555387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 320
Target Start/End: Complemental strand, 22752619 - 22752574
Alignment:
Q  275 atacattaattattgaatgaatctaaaatgtaaacttttacttata 320  Q
    |||||||| |||||||||||||||||||| |||| |||| ||||||    
T  22752619 atacattatttattgaatgaatctaaaatataaatttttgcttata 22752574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Original strand, 27231919 - 27231964
Alignment:
Q  276 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  27231919 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 27231964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 321
Target Start/End: Complemental strand, 37101761 - 37101708
Alignment:
Q  268 aaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||||| |||||| | ||| ||||||||||||||||| ||| ||||||||||||    
T  37101761 aaaccacatacatcatttaatgaatgaatctaaaatgcaaagttttacttataa 37101708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 302
Target Start/End: Original strand, 28038575 - 28038607
Alignment:
Q  270 accaaatacattaattattgaatgaatctaaaa 302  Q
    |||||||||||||| ||||||||||||||||||    
T  28038575 accaaatacattaagtattgaatgaatctaaaa 28038607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 41247948 - 41247908
Alignment:
Q  262 taatacaaaccaaatacattaattattgaatgaatctaaaa 302  Q
    |||||||||||| |||||||||||||| ||| |||||||||    
T  41247948 taatacaaaccatatacattaattattcaataaatctaaaa 41247908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 9793444 - 9793485
Alignment:
Q  274 aatacattaattattgaatgaatctaaaatgtaaacttttac 315  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  9793444 aatacattagttattgaatgaatctaaaatgtaaacttttac 9793485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 330
Target Start/End: Complemental strand, 18959299 - 18959245
Alignment:
Q  276 tacattaattattgaatgaatctaaaatgtaaacttttacttataactgagactg 330  Q
    ||||| |||||||||||||| ||||||||| || ||||||||||||||| |||||    
T  18959299 tacatcaattattgaatgaacctaaaatgttaaattttacttataactgtgactg 18959245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 321
Target Start/End: Original strand, 38414295 - 38414353
Alignment:
Q  263 aatacaaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||||| | |||||||||| |||||||||||||||||||| || |||||||| ||||||    
T  38414295 aatacatatcaaatacattcattattgaatgaatctaaaaagtgaacttttatttataa 38414353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 321
Target Start/End: Original strand, 7258677 - 7258712
Alignment:
Q  286 attgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||||||||||||||||||||| ||||||||||||    
T  7258677 attgaatgaatctaaaatgtaaaattttacttataa 7258712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 8793787 - 8793736
Alignment:
Q  270 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||||||||| ||||| | |||||||||||||| | |||||||||||||||    
T  8793787 accaaatacatcaattactcaatgaatctaaaatatcaacttttacttataa 8793736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Original strand, 2296556 - 2296601
Alignment:
Q  276 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||||| | ||||||||||||||||||| ||| ||||||||||||    
T  2296556 tacattattaattgaatgaatctaaaatgcaaaattttacttataa 2296601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 12958838 - 12958793
Alignment:
Q  276 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  12958838 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 12958793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 35011274 - 35011229
Alignment:
Q  276 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||||||||||||||||||||||||||  | ||||||| |||||||    
T  35011274 tacattaattattgaatgaatctaaaaaattaactttttcttataa 35011229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 42786426 - 42786381
Alignment:
Q  276 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  42786426 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 42786381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 44796404 - 44796359
Alignment:
Q  276 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  44796404 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 44796359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 2627238 - 2627206
Alignment:
Q  270 accaaatacattaattattgaatgaatctaaaa 302  Q
    ||||||||||||| |||||||||||||||||||    
T  2627238 accaaatacattatttattgaatgaatctaaaa 2627206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 6197905 - 6197953
Alignment:
Q  273 aaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||||||||||||||| |||| |||||||| ||||| |||| |||||||    
T  6197905 aaatacattaattatttaatgtatctaaaaagtaaagttttgcttataa 6197953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 321
Target Start/End: Original strand, 28249013 - 28249064
Alignment:
Q  270 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||||||||||||||||| ||||||||||||| || ||||||| |||||||    
T  28249013 accaaatacattaattatttaatgaatctaaaaagtcaactttttcttataa 28249064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 5109431 - 5109380
Alignment:
Q  270 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||||||||||||||| | ||||||||||||| || ||||||| |||||||    
T  5109431 accaaatacattaattactcaatgaatctaaaaagttaactttttcttataa 5109380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 12873791 - 12873740
Alignment:
Q  270 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||||||||||||||| | ||||||||||||| || ||||||| |||||||    
T  12873791 accaaatacattaattacttaatgaatctaaaaagtcaactttttcttataa 12873740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 5528218 - 5528173
Alignment:
Q  276 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||||| ||||||||||||| |||||  |||||||||||||||||    
T  5528218 tacattagttattgaatgaatataaaaaataaacttttacttataa 5528173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 26234118 - 26234151
Alignment:
Q  288 tgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||||||||||||||||||||||||| |||||||    
T  26234118 tgaatgaatctaaaatgtaaacttttgcttataa 26234151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 31102023 - 31102076
Alignment:
Q  268 aaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||||| |||||| | ||| ||||||||||||||||| |||||||| |||||||    
T  31102023 aaaccacatacatcatttaatgaatgaatctaaaatgcaaacttttgcttataa 31102076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 41153189 - 41153242
Alignment:
Q  268 aaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||||||||||| ||||| | ||||||||||||| || ||||||| |||||||    
T  41153189 aaaccaaatacatcaattactcaatgaatctaaaaagtcaactttttcttataa 41153242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 45034460 - 45034415
Alignment:
Q  276 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  45034460 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 45034415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 321
Target Start/End: Original strand, 13002 - 13039
Alignment:
Q  284 ttattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  13002 ttattgaatgaatctaaaaagtaaacttttacttataa 13039  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 26254617 - 26254559
Alignment:
Q  270 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataactgagact 329  Q
    ||||||||||||||||||| ||||||| ||||| |||||| | ||||||||| |||||||    
T  26254617 accaaatacattaattattaaatgaatataaaaagtaaac-tctacttataattgagact 26254559  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 321
Target Start/End: Original strand, 53225724 - 53225775
Alignment:
Q  270 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||||||||||||||||| ||||||||||||| || || |||| |||||||    
T  53225724 accaaatacattaattattcaatgaatctaaaaagtcaattttttcttataa 53225775  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 321
Target Start/End: Original strand, 44755510 - 44755556
Alignment:
Q  275 atacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||||||| ||| ||||||||||||||||| ||| ||||||||||||    
T  44755510 atacattatttaatgaatgaatctaaaatgcaaagttttacttataa 44755556  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Original strand, 20459326 - 20459371
Alignment:
Q  276 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  20459326 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 20459371  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 39993116 - 39993169
Alignment:
Q  268 aaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||| |||||||||||||||| ||||||||||||| || |  ||||||||||||    
T  39993116 aaactaaatacattaattattcaatgaatctaaaaagttattttttacttataa 39993169  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 42804318 - 42804273
Alignment:
Q  276 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  42804318 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 42804273  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 43020818 - 43020773
Alignment:
Q  276 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  43020818 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 43020773  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 47866098 - 47866053
Alignment:
Q  276 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  47866098 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 47866053  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 49481926 - 49481893
Alignment:
Q  288 tgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||||||||||||||||||||||||| |||||||    
T  49481926 tgaatgaatctaaaatgtaaacttttgcttataa 49481893  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 5656560 - 5656512
Alignment:
Q  273 aaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||||||| | | ||| |||||||||||||||||||||||| |||||||    
T  5656560 aaatacatcattaatttaatgaatctaaaatgtaaactttttcttataa 5656512  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 37895338 - 37895386
Alignment:
Q  273 aaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||||||||||||||  |||||||||||| || ||||||| |||||||    
T  37895338 aaatacattaattattctatgaatctaaaaagtcaactttttcttataa 37895386  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 302
Target Start/End: Original strand, 51313542 - 51313574
Alignment:
Q  270 accaaatacattaattattgaatgaatctaaaa 302  Q
    |||||||||||||| ||||||||||||||||||    
T  51313542 accaaatacattaagtattgaatgaatctaaaa 51313574  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 321
Target Start/End: Complemental strand, 1302797 - 1302760
Alignment:
Q  284 ttattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  1302797 ttattgaatgaaactaaaatgtaaatttttacttataa 1302760  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 31398320 - 31398353
Alignment:
Q  288 tgaatgaatctaaaatgtaaacttttacttataa 321  Q
    |||||||||||||||||||||||||| |||||||    
T  31398320 tgaatgaatctaaaatgtaaacttttgcttataa 31398353  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 7055623 - 7055591
Alignment:
Q  270 accaaatacattaattattgaatgaatctaaaa 302  Q
    |||||||||||||| ||||||||||||||||||    
T  7055623 accaaatacattaagtattgaatgaatctaaaa 7055591  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 30438808 - 30438760
Alignment:
Q  273 aaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 321  Q
    ||||||||||||||||  |||||||||||| || ||||||| |||||||    
T  30438808 aaatacattaattattctatgaatctaaaaagtcaactttttcttataa 30438760  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 31971108 - 31971148
Alignment:
Q  268 aaaccaaatacattaattattgaatgaatctaaaatgtaaa 308  Q
    ||||||||||||| ||||||| |||| ||||||||||||||    
T  31971108 aaaccaaatacataaattatttaatgtatctaaaatgtaaa 31971148  T

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