View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6083_high_2 (Length: 476)
Name: NF6083_high_2
Description: NF6083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6083_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 16 - 460
Target Start/End: Original strand, 50723985 - 50724429
Alignment:
| Q |
16 |
atcacacttcaaggaaatgcatacactaaagagattcaattggattgaataaagaaacagagattgagcataattaaattcccaataaccacatcaccgt |
115 |
Q |
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| T |
50723985 |
atcacacttcaaggaaatgcatacactaaagagattcaactggattgaataaagaaacagagattgagcataattaaattcccaataaccacatcaccgt |
50724084 |
T |
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| Q |
116 |
gtcaagaagagctccaaggcgatcaccaaagctaagttgcacaattgttgcttcagaatctgagtcttgatctatcaatactattggcattggaacactg |
215 |
Q |
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| T |
50724085 |
gtcaagaagagctccaaggcgatcaccaaagctaagttgcacaattgttgcttcagaatctgagtcttgatctatcaatactattggcattggaacactg |
50724184 |
T |
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| Q |
216 |
tccagatttttactggatatctgcagtaagaattaacaaatcaaatgttgcaaaaatattgcacataaaagcaaggcataccaaccagtctaaaaagacc |
315 |
Q |
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| T |
50724185 |
tccagatttttactggatatctgcagtaagaattaacaaatcaaatgttgcaaaaatattgcacataaaagcaaggcataccaaccagtctaaaaagacc |
50724284 |
T |
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| Q |
316 |
agagggtgcatataaggaataattaacaaaagctcagattcttggcaaaaacacttgtcaattatagcgaccactatcttacaccagcacaaactcagac |
415 |
Q |
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| T |
50724285 |
agagggtgcatataaggaataattaacaaaagctcggattcttggcaaaaacacttgtcaattatagcgaccgctatcttacaccagcacaaactcagac |
50724384 |
T |
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| Q |
416 |
acagacatacagagtgaatataatgcaagattaacttgtaaaatg |
460 |
Q |
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| T |
50724385 |
acagacatacagagtgaatataatgcaagattaacttgtaaaatg |
50724429 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 146
Target Start/End: Original strand, 45316931 - 45316963
Alignment:
| Q |
114 |
gtgtcaagaagagctccaaggcgatcaccaaag |
146 |
Q |
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| T |
45316931 |
gtgtcaagaagagcaccaaggcgatcaccaaag |
45316963 |
T |
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