View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6083_high_9 (Length: 254)
Name: NF6083_high_9
Description: NF6083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6083_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 32494892 - 32494658
Alignment:
| Q |
1 |
gtaagaagaatatattcaccataaaaaatataaacacgcaagcaatttcatgacttcgagctcaagatggaatgttcaatttacaatttattgatcacta |
100 |
Q |
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| T |
32494892 |
gtaagaagaatatattcaccataaaaaatataaacacgcaagcaatttcatgacttcgagttcaagatggaatgttcaatttacaatttattgatcacta |
32494793 |
T |
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| Q |
101 |
tgaaatagctacatagatcaccacaaatacaataaaatgaattgatagtaaataattctataaacatcgtacaattgtagaaacaggaacgaaaatgtat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32494792 |
tgaaatagctacatagatcaccacaaatacaataaaatgaattgatagtaaataattctataaacaccgtacaattgtagaaacaggaacgaaaatgtat |
32494693 |
T |
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| Q |
201 |
taaagaatttgcaatttaatgatgaaagagactac |
235 |
Q |
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| T |
32494692 |
taaagaatttgcaatttaatgatgaaagagactac |
32494658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 81 - 234
Target Start/End: Complemental strand, 28596580 - 28596439
Alignment:
| Q |
81 |
ttacaatttattgatcactatgaaatagctacatagatcaccacaaatacaataaaatgaattgatagtaaataattctataaacatcgtacaattgtag |
180 |
Q |
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| T |
28596580 |
ttacaatttattgatcactatgaaatagctaa---------cacatatacaataaaatgaattgataataaatctttatataaacaccgtacaattgtag |
28596490 |
T |
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| Q |
181 |
aaacaggaacgaaaatgtattaaagaatttgcaatttaatgatgaaagagacta |
234 |
Q |
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| T |
28596489 |
aaaaaggaacgcaaatgtataaaagaatt---aatttaatgatgaaagagacta |
28596439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 28596685 - 28596639
Alignment:
| Q |
37 |
cgcaagcaatttcatgacttcgagctcaagatggaatgttcaattta |
83 |
Q |
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| T |
28596685 |
cgcaagcaatttcatgacttcgtactcaagatggaatgttcaattta |
28596639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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