View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6083_low_1 (Length: 795)
Name: NF6083_low_1
Description: NF6083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6083_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 644; Significance: 0; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 11 - 778
Target Start/End: Complemental strand, 31613105 - 31612338
Alignment:
| Q |
11 |
gtagcataggaagcgggggattggggcatgaaccaacatcgacaaatgattatgatgatgaacatgacaaaaacaaaacaaaagttcatccaaagaaacc |
110 |
Q |
| |
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|||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31613105 |
gtagcacaggaagcggaggattggggcatgatccaacatcgacaaatgattatgatgatgaacatgacaaaaacaaaacaaaagttaatccaaagaaacc |
31613006 |
T |
|
| Q |
111 |
aataggtagcacaggaagcggaggattggggactgatccgcaaacgcataatcctctgctaccaacaaatccaccaaaaaattctgatgatgatgaagat |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31613005 |
aataggtagcacaggaagcggaggattggggactgatccgcaaacgcataatcctctgctaccaacaaatccaccaaaaaattctgatgatgatgaagat |
31612906 |
T |
|
| Q |
211 |
caacttgacaatggcgatgagtgagtggtgatttttcttttcagaaaatggtaataagagttcttagggcattgtttaagcacattaattaggagttgtt |
310 |
Q |
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|
||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |
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| T |
31612905 |
caacttgacaaaggcgatgagtgagtggtgatttttctttttaggaaatggtaataagagttctcagggcattatttaagcacattaattaggatttgtt |
31612806 |
T |
|
| Q |
311 |
ttaattaattttctcatgagattaatggatattgttttggcattcttacactgaaatgagaatggatgatagttaatattacatggttctagttttttaa |
410 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31612805 |
ttaattaattttctcatgaaattaatggatattgttttggcattcttacattgaaatgagaatggatgatagttaatattacatgcttctagttttttaa |
31612706 |
T |
|
| Q |
411 |
ttttggtttatgaattacaaaatcaccaaaatgattatcggcttcacaacaagttgcctctacatttcacggtcctgtctaaaaagttatacaaaccaga |
510 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| ||||||||| |||| |
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| T |
31612705 |
ttttggtttatgaattacaaaatcacaaaaatgattatcggcttcacgacaagttgcctctacatttcacggtattgcctaaaaaattatacaaatcaga |
31612606 |
T |
|
| Q |
511 |
ctatcaaccaaaatatctctaagataaaacaactcatttcagtgtacgattggatcagttttcaaagataaatgcagaagctgagcatatgtcaaaggtt |
610 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| |
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| T |
31612605 |
ctatcaaccaaaatatctctaaaataaaacaactcatttcagtgtacgattggatcagtcttcaatgacaaatgcagaagctgagcatatgtcaaaggtt |
31612506 |
T |
|
| Q |
611 |
tcttatgccggttttattggttgtttaatgtataatatgatcttcattagaccatatctaacacaagctacaagccaagttttcaagtctatgtccaaat |
710 |
Q |
| |
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|||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||| |
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| T |
31612505 |
tcttatgctggttttattggttgtttaatgtatgatatgattttcattagaccatatctaacacaagttataagtcaagttttcaagtctatgtccaaat |
31612406 |
T |
|
| Q |
711 |
caggtaagtgtcattgtgaagtattcaattggattttcatgcatttgaagggtacaataggtcatggt |
778 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31612405 |
taggtaagtgtcattgtgaagtattcaattggattttcatgcatttgaagggtacaataggtcatggt |
31612338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 559 - 778
Target Start/End: Complemental strand, 31611535 - 31611316
Alignment:
| Q |
559 |
attggatcagttttcaaagataaatgcagaagctgagcatatgtcaaaggtttcttatgccggttttattggttgtttaatgtataatatgatcttcatt |
658 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| || | | |||||| |
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| T |
31611535 |
attggattagttttcaaagacaaatgcagaagtagagcatatgtcaaaggttccttatgccagttttattggttgtttaatgtatgatgtagtattcatt |
31611436 |
T |
|
| Q |
659 |
agaccatatctaacacaagctacaagccaagttttcaagtctatgtccaaatcaggtaagtgtcattgtgaagtattcaattggattttcatgcatttga |
758 |
Q |
| |
|
|||||||||||| ||||||||| ||| |||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||| | |||| |
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| T |
31611435 |
agaccatatctagcacaagctataagttaagttttcaagtttatgtccaaatcaggtaagcatcattgtgaagcattcaattggattttcatgtacttga |
31611336 |
T |
|
| Q |
759 |
agggtacaataggtcatggt |
778 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
31611335 |
agggtacaataggtcatggt |
31611316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 31608465 - 31608359
Alignment:
| Q |
115 |
ggtagcacaggaagcggaggattggggactgatccgcaaacgcataatcctctgctaccaacaaatccaccaaaaaattctgatgatgatgaagatcaac |
214 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||| | | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31608465 |
ggtagcacaggaagcgaaggtttggggactgatccgcaaatggagaatcctcagctaccaacaaatccaccaaaaaattctgatgatgatgaagatcaac |
31608366 |
T |
|
| Q |
215 |
ttgacaa |
221 |
Q |
| |
|
||||||| |
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|
| T |
31608365 |
ttgacaa |
31608359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 331 - 433
Target Start/End: Complemental strand, 31607227 - 31607125
Alignment:
| Q |
331 |
attaatggatattgttttggcattcttacactgaaatgagaatggatgatagttaatattacatggttctagttttttaattttggtttatgaattacaa |
430 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| |||||| |||| |||||||||||||||||||||| | |||||| ||| |||||||||||||||||| || |
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|
| T |
31607227 |
attaatggatatggttttggcatttttacattgaaataagaacggatgatagttaatattacatgctactagttgttttattttggtttatgaattagaa |
31607128 |
T |
|
| Q |
431 |
aat |
433 |
Q |
| |
|
||| |
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|
| T |
31607127 |
aat |
31607125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 77 - 221
Target Start/End: Complemental strand, 31623912 - 31623768
Alignment:
| Q |
77 |
acaaaaacaaaacaaaagttcatccaaagaaaccaataggtagcacaggaagcggaggattggggactgatccgcaaacgcataatcctctgctaccaac |
176 |
Q |
| |
|
|||||| |||||| |||||| || || ||||||| |||||||||||| | |||||||||||||||| ||| || ||| ||| | | |||||||| |
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|
| T |
31623912 |
acaaaaccaaaaccaaagttggtcgaaggaaaccaccaggtagcacaggtggaggaggattggggactggtccacacacgaatattacaaagctaccaaa |
31623813 |
T |
|
| Q |
177 |
aaatccaccaaaaaattctgatgatgatgaagatcaacttgacaa |
221 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
31623812 |
aaatccaccaaaagattctgatgatgatgaagatcaacttgacaa |
31623768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 31605378 - 31605315
Alignment:
| Q |
77 |
acaaaaacaaaacaaaagttcatccaaagaaaccaataggtagcacaggaagcggaggattggg |
140 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
31605378 |
acaaaaacaaaacaaaagttgatcgaaagaaaccaataggtagcacaggaggcggaggattggg |
31605315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 280 - 358
Target Start/End: Complemental strand, 31623693 - 31623614
Alignment:
| Q |
280 |
cattgtttaa-gcacattaattaggagttgttttaattaattttctcatgagattaatggatattgttttggcattctta |
358 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| | ||||||| |
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|
| T |
31623693 |
cattgtttaatgcacattaattaggagttgttttaattaattttttcatgtaattaatggatattgtttttgtattctta |
31623614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 280 - 358
Target Start/End: Complemental strand, 31605099 - 31605021
Alignment:
| Q |
280 |
cattgtttaa-gcacattaattaggagttgttttaattaattttctcatgagattaatggatattgttttggcattctta |
358 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||| ||||||| |
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|
| T |
31605099 |
cattgtttaaagcacattaattag-agttgttttaattaattttctcatgaaattaatggacgttgttttgggattctta |
31605021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 31608647 - 31608574
Alignment:
| Q |
77 |
acaaaaacaaaacaaaagttcatccaaagaaaccaataggtagcacaggaagcggaggattggggactgatccgcaa |
153 |
Q |
| |
|
|||||||||||||||||||| || ||| ||||||||||| ||| ||||| |||||||||||||||||||||||| |
|
|
| T |
31608647 |
acaaaaacaaaacaaaagtttatgcaatgaaaccaatagttagaccagga---ggaggattggggactgatccgcaa |
31608574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 31619289 - 31619231
Alignment:
| Q |
77 |
acaaaaacaaaacaaaagttcatccaaagaaaccaataggtagcacaggaagcggagga |
135 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||| ||||||||||||||||||||| |
|
|
| T |
31619289 |
acaaaaacaaaacaaaagttgttggaaagaaaccaatgggtagcacaggaagcggagga |
31619231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 31605276 - 31605227
Alignment:
| Q |
107 |
aaccaataggtagcacaggaagcggaggattggggactgatccgcaaacg |
156 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
31605276 |
aaccaatgggtagcacaggaagcggaggaaaggggactgatgcgcaaacg |
31605227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 561
Target Start/End: Complemental strand, 31607017 - 31606982
Alignment:
| Q |
526 |
tctctaagataaaacaactcatttcagtgtacgatt |
561 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31607017 |
tctctaagataaaacaacccatttcagtgtacgatt |
31606982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 141
Target Start/End: Complemental strand, 31613119 - 31613080
Alignment:
| Q |
102 |
aaagaaaccaataggtagcacaggaagcggaggattgggg |
141 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
31613119 |
aaagaaaccgatgggtagcacaggaagcggaggattgggg |
31613080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 559 - 749
Target Start/End: Complemental strand, 33559704 - 33559514
Alignment:
| Q |
559 |
attggatcagttttcaaagataaatgcagaagctgagcatatgtcaaaggtttcttatgccggttttattggttgtttaatgtataatatgatcttcatt |
658 |
Q |
| |
|
||||||| ||| | |||||||| ||||||||| | || |||||||||||||| |||||| | || ||||||||||||| |||||| |||| ||| || | |
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|
| T |
33559704 |
attggattagtgtccaaagatagatgcagaagttaagtatatgtcaaaggttccttatgtcagtgttattggttgtttgatgtatgttatggtctgcact |
33559605 |
T |
|
| Q |
659 |
agaccatatctaacacaagctacaagccaagttttcaagtctatgtccaaatcaggtaagtgtcattgtgaagtattcaattggattttca |
749 |
Q |
| |
|
|||| | || | || ||| | ||| |||||| ||||| |||||||||||| |||||| |||||| ||| || | || |||||||||| |
|
|
| T |
33559604 |
agactagatttggcataagttgtaagtcaagttcgcaagtttatgtccaaatcgggtaagcatcattgggaattagttaaatggattttca |
33559514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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