View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6083_low_13 (Length: 206)

Name: NF6083_low_13
Description: NF6083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6083_low_13
NF6083_low_13
[»] chr8 (2 HSPs)
chr8 (9-185)||(36738406-36738582)
chr8 (16-179)||(27352563-27352726)
[»] chr6 (2 HSPs)
chr6 (16-179)||(14478056-14478219)
chr6 (16-184)||(10574894-10575062)
[»] chr7 (5 HSPs)
chr7 (16-184)||(27952810-27952978)
chr7 (16-179)||(1953685-1953848)
chr7 (16-184)||(12185773-12185942)
chr7 (16-184)||(1960818-1960986)
chr7 (20-179)||(12696606-12696765)
[»] scaffold0015 (1 HSPs)
scaffold0015 (16-179)||(184267-184429)
[»] chr2 (2 HSPs)
chr2 (16-179)||(29225801-29225963)
chr2 (16-179)||(29339100-29339262)
[»] scaffold0147 (1 HSPs)
scaffold0147 (16-179)||(5883-6046)
[»] chr3 (2 HSPs)
chr3 (16-179)||(22096323-22096486)
chr3 (16-179)||(23383867-23384030)
[»] scaffold0002 (1 HSPs)
scaffold0002 (16-179)||(352332-352495)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 36738582 - 36738406
Alignment:
Q  9 gagtgagatgaatcaagtcctcaaatatgaattgtcaatattcataagcacaatgctattgaaattgcccgaaatttttcaaaaatccagttcatgtttg 108  Q
    |||| ||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36738582 gagtcagatgaatcaagttctcaaacatgaactgtcaatattcataagcacaatgctattgaaattgctcgaaatttttcaaaaatccagttcatgtttg 36738483  T
Q  109 actcactttacaactttgatatttttactttgttgaacccttaaccttcttgtactttgtcccttgccttatgataa 185  Q
    ||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36738482 actcactttaggactttgatattttcactttgttgaacccttaaccttcttgtactttgtcccttgccttatgataa 36738406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 27352563 - 27352726
Alignment:
Q  16 atgaatcaagtcctcaaatatgaattgtcaatattcataagcacaatgct-attgaaattgcccgaaatttttcaaaaatccagttcatgtttgactcac 114  Q
    |||||||||||||||||| ||||| | ||||||||||| ||||||||||| |||||||||| |  ||||| || |||||||||||||||||||||  |||    
T  27352563 atgaatcaagtcctcaaacatgaactatcaatattcatgagcacaatgctcattgaaattgactaaaattgtt-aaaaatccagttcatgtttgatccac 27352661  T
Q  115 tttacaactttgatatttttactttgttgaacccttaaccttcttgtactttgtcccttgcctta 179  Q
    ||||  ||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||    
T  27352662 tttaggactttgatattttcactttgttgaacccgaaaccttcttgtactttgtcccttgcctta 27352726  T

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Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 14478056 - 14478219
Alignment:
Q  16 atgaatcaagtcctcaaatatgaattgtcaatattcataagcacaatgct-attgaaattgcccgaaatttttcaaaaatccagttcatgtttgactcac 114  Q
    |||||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||||||||| ||||| || ||||||||||||||||||||||||||    
T  14478056 atgaatcaagtcctcaaacatgaactgtcaatattcatgagcacaatgctcattgaaattgcccaaaattgtt-aaaaatccagttcatgtttgactcac 14478154  T
Q  115 tttacaactttgatatttttactttgttgaacccttaaccttcttgtactttgtcccttgcctta 179  Q
    ||||  |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  14478155 tttaggactttgatatttttacattgttgaacccttaaccttattgtactttgtcccttgcctta 14478219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 10574894 - 10575062
Alignment:
Q  16 atgaatcaagtcctcaaatatgaattgtcaatattcataagcacaatgct-attgaaattgcccgaaatttttcaaaaatccagttcatgtttgactcac 114  Q
    |||||||||||| ||||| ||||| || |||||||||||||||||||||| | ||||| ||||||||||||||||||| || ||||||||||||| ||||    
T  10574894 atgaatcaagtcatcaaacatgaactgacaatattcataagcacaatgcttaatgaaaatgcccgaaatttttcaaaattc-agttcatgtttgattcac 10574992  T
Q  115 tttacaactttgatatttttactttgttgaacccttaaccttcttgtactttgtcccttgccttatgata 184  Q
    ||||  ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  10574993 tttaggactttgataattttactttgttgaacccttaaccttcttgtactatgtcccttgccttaagata 10575062  T

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Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 27952978 - 27952810
Alignment:
Q  16 atgaatcaagtcctcaaatatgaattgtcaatattcataagcacaatgctatt-gaaattgcccgaaatttttcaaaaatccagttcatgtttgactcac 114  Q
    |||||||||||||||||| ||||| |||||||||||||||||||| |||| || |||||||||||||||||||||||| |||||||||||||||||||||    
T  27952978 atgaatcaagtcctcaaacatgaactgtcaatattcataagcacagtgctctttgaaattgcccgaaatttttcaaaa-tccagttcatgtttgactcac 27952880  T
Q  115 tttacaactttgatatttttactttgttgaacccttaaccttcttgtactttgtcccttgccttatgata 184  Q
    | ||  ||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||    
T  27952879 tgtaggactttgatattttcactttgttgaacccttaaccttctcgtactctgtcccttgccttaggata 27952810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 1953685 - 1953848
Alignment:
Q  16 atgaatcaagtcctcaaatatgaattgtcaatattcataagcacaatgct-attgaaattgcccgaaatttttcaaaaatccagttcatgtttgactcac 114  Q
    |||||||||||||||||| ||||| | ||||||||||| ||||||||||| ||||||||||||| |||||  | |||| ||||||| ||||| |||||||    
T  1953685 atgaatcaagtcctcaaacatgaactatcaatattcatcagcacaatgctcattgaaattgcccaaaattgatgaaaa-tccagttaatgttcgactcac 1953783  T
Q  115 tttacaactttgatatttttactttgttgaacccttaaccttcttgtactttgtcccttgcctta 179  Q
    |||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  1953784 tttagaactttgatatttttagtttgttgaacccttaacctttttgtactttgtcccttgcctta 1953848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 12185773 - 12185942
Alignment:
Q  16 atgaatcaagtcctcaaatatgaattgtcaatattcataagcacaatgctat-tgaaattgcccgaaatttttcaaaaatccagttcatgtttgactcac 114  Q
    |||||||||||||| ||| ||| ||||||||||||||||||||||| |||   |||| |||||||||| ||||||||||||||| ||||||||||  |||    
T  12185773 atgaatcaagtccttaaacatggattgtcaatattcataagcacaacgcttgatgaatttgcccgaaaattttcaaaaatccagctcatgtttgatccac 12185872  T
Q  115 tttacaactttgatatttttactttgttgaacccttaaccttcttgtactttgtcccttgccttatgata 184  Q
    ||||  ||||||||||||| |||||||||||||   ||||||||||||||||||||||||||||| ||||    
T  12185873 tttaggactttgatattttcactttgttgaacctgaaaccttcttgtactttgtcccttgccttaggata 12185942  T

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Target: chr7; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 1960818 - 1960986
Alignment:
Q  16 atgaatcaagtcctcaaatatgaattgtcaatattcataagcacaatgct-attgaaattgcccgaaatttttcaaaaatccagttcatgtttgactcac 114  Q
    ||||||||||| |||||| || ||  |||||||||||||||||||||||| ||||||||||||| |||||  |||||| || ||||||||| ||||||||    
T  1960818 atgaatcaagttctcaaacatcaaccgtcaatattcataagcacaatgctcattgaaattgcccaaaattgctcaaaa-tctagttcatgtgtgactcac 1960916  T
Q  115 tttacaactttgatatttttactttgttgaacccttaaccttcttgtactttgtcccttgccttatgata 184  Q
    ||||  ||||||||| ||| ||||||||||||||||||| || |||||||||||||||||||||| ||||    
T  1960917 tttaggactttgataatttcactttgttgaacccttaactttattgtactttgtcccttgccttaggata 1960986  T

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Target: chr7; HSP #5
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 12696765 - 12696606
Alignment:
Q  20 atcaagtcctcaaatatgaattgtcaatattcataagcacaatgct-attgaaattgcccgaaatttttcaaaaatccagttcatgtttgactcacttta 118  Q
    |||||||||||||| ||||| ||||||||||||| |||||||| || ||||||||||||  ||||| || ||||||||||||||||||||| ||||||||    
T  12696765 atcaagtcctcaaacatgaactgtcaatattcatgagcacaattctcattgaaattgcctaaaattgtt-aaaaatccagttcatgtttgattcacttta 12696667  T
Q  119 caactttgatatttttactttgttgaacccttaaccttcttgtactttgtcccttgcctta 179  Q
      ||||||||||||| ||||||| |||||   ||| |||||||||||||||||||| ||||    
T  12696666 ggactttgatattttcactttgtcgaacctgaaacgttcttgtactttgtcccttgtctta 12696606  T

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Target: scaffold0015 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 184267 - 184429
Alignment:
Q  16 atgaatcaagtcctcaaatatgaattgtcaatattcataagcacaatgct-attgaaattgcccgaaatttttcaaaaatccagttcatgtttgactcac 114  Q
    |||||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||||||||| ||||| || |||||||||||||||||||||| |||    
T  184267 atgaatcaagtcctcaaacatgaactgtcaatattcatgagcacaatgctcattgaaattgccc-aaattgtt-aaaaatccagttcatgtttgacgcac 184364  T
Q  115 tttacaactttgatatttttactttgttgaacccttaaccttcttgtactttgtcccttgcctta 179  Q
    | ||  ||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  184365 tgtaggactttgataattttactttgttgaacccttaaccttattgtactttgtccctcgcctta 184429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 7e-48; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 29225801 - 29225963
Alignment:
Q  16 atgaatcaagtcctcaaatatgaattgtcaatattcataagcacaatgct-attgaaattgcccgaaatttttcaaaaatccagttcatgtttgactcac 114  Q
    |||||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||||||||| ||||| || |||||||||||||||||||||| |||    
T  29225801 atgaatcaagtcctcaaacatgaactgtcaatattcatgagcacaatgctcattgaaattgccc-aaattgtt-aaaaatccagttcatgtttgacgcac 29225898  T
Q  115 tttacaactttgatatttttactttgttgaacccttaaccttcttgtactttgtcccttgcctta 179  Q
    | ||  ||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  29225899 tgtaggactttgataattttactttgttgaacccttaaccttattgtactttgtccctcgcctta 29225963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 29339100 - 29339262
Alignment:
Q  16 atgaatcaagtcctcaaatatgaattgtcaatattcataagcacaatgct-attgaaattgcccgaaatttttcaaaaatccagttcatgtttgactcac 114  Q
    |||||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||||||||| ||||| || |||||||||||||||||||||| |||    
T  29339100 atgaatcaagtcctcaaacatgaactgtcaatattcatgagcacaatgctcattgaaattgccc-aaattgtt-aaaaatccagttcatgtttgacgcac 29339197  T
Q  115 tttacaactttgatatttttactttgttgaacccttaaccttcttgtactttgtcccttgcctta 179  Q
    | ||  ||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  29339198 tgtaggactttgataattttactttgttgaacccttaaccttattgtactttgtccctcgcctta 29339262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 5883 - 6046
Alignment:
Q  16 atgaatcaagtcctcaaatatgaattgtcaatattcataagcacaatgct-attgaaattgcccgaaatttttcaaaaatccagttcatgtttgactcac 114  Q
    |||||||||||||||||| ||||| | ||||||||||| ||||||||||| |||||||||| |  ||||| || |||||||||||||||||||||  |||    
T  5883 atgaatcaagtcctcaaacatgaactatcaatattcatgagcacaatgctcattgaaattgtctaaaattgtt-aaaaatccagttcatgtttgatccac 5981  T
Q  115 tttacaactttgatatttttactttgttgaacccttaaccttcttgtactttgtcccttgcctta 179  Q
    ||||  ||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||    
T  5982 tttaggactttgatattttcactttgttgaacccgaaaccttcttgtactttgtcccttgcctta 6046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 22096323 - 22096486
Alignment:
Q  16 atgaatcaagtcctcaaatatgaattgtcaatattcataagcacaatgct-attgaaattgcccgaaatttttcaaaaatccagttcatgtttgactcac 114  Q
    |||||||||||||| ||| ||||| ||||||||||||| |||||| |||| ||||||||||||  ||||| || |||||||||||||||||||||| |||    
T  22096323 atgaatcaagtccttaaacatgaactgtcaatattcatgagcacattgctcattgaaattgcctaaaattgtt-aaaaatccagttcatgtttgacgcac 22096421  T
Q  115 tttacaactttgatatttttactttgttgaacccttaaccttcttgtactttgtcccttgcctta 179  Q
    ||||  ||||||||||||||| ||||||||||| |||||||| ||||||||||||||| ||||||    
T  22096422 tttaggactttgatatttttattttgttgaacctttaaccttattgtactttgtccctcgcctta 22096486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 23383867 - 23384030
Alignment:
Q  16 atgaatcaagtcctcaaatatgaattgtcaatattcataagcacaatgct-attgaaattgcccgaaatttttcaaaaatccagttcatgtttgactcac 114  Q
    |||||||||||||||||| ||||| |||||||||||| |||||||||||| ||||||||||||  ||||| || ||||||||||||||||||||||  ||    
T  23383867 atgaatcaagtcctcaaacatgaactgtcaatattcaaaagcacaatgctcattgaaattgcctaaaattgtt-aaaaatccagttcatgtttgacgtac 23383965  T
Q  115 tttacaactttgatatttttactttgttgaacccttaaccttcttgtactttgtcccttgcctta 179  Q
    ||||  ||||||||| ||||||||||||||||||||| ||||  |||||||||||||| ||||||    
T  23383966 tttaggactttgataattttactttgttgaacccttacccttagtgtactttgtccctcgcctta 23384030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 352495 - 352332
Alignment:
Q  16 atgaatcaagtcctcaaatatgaattgtcaatattcataagcacaatgct-attgaaattgcccgaaatttttcaaaaatccagttcatgtttgactcac 114  Q
    |||||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||||||||  ||||| || |||||||||||||||| ||||  |||    
T  352495 atgaatcaagtcctcaaacatgaactgtcaatattcatgagcacaatgctcattgaaattgcctaaaattgtt-aaaaatccagttcatgcttgatccac 352397  T
Q  115 tttacaactttgatatttttactttgttgaacccttaaccttcttgtactttgtcccttgcctta 179  Q
    ||||  ||||||||||||| ||||||||||||||  |||| ||||| ||||||||||||||||||    
T  352396 tttaggactttgatattttcactttgttgaacccgaaaccgtcttgcactttgtcccttgcctta 352332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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