View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6083_low_4 (Length: 362)
Name: NF6083_low_4
Description: NF6083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6083_low_4 |
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| [»] chr2 (14 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 32174790 - 32174429
Alignment:
| Q |
1 |
ttgataatggatacaataaggtatatatcattcttcaaatatatcattaatatttgggtttcattcatactaaaatatcattgggatgcataagaacaag |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32174790 |
ttgataatggatacaataaggtatatatttttcttcaaatatatcattaatctttgggtttcattcatactaaaatatcattgggatgcataagaacaag |
32174691 |
T |
|
| Q |
101 |
aaaagatttagaagtatatgagcgtacatgattctagtgtagatacatttaactatagtcataatttagccaagaaattaacgtttgttgataatgtcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32174690 |
aaaagatttagaagtatatgagcgtacatgattctagtgtagatacatttaactatagtcataatttagccaagaaattaacgtttgttgataatgtcaa |
32174591 |
T |
|
| Q |
201 |
caggtgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgttttcacaacaaatcacaaagaaaggc |
300 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| || |||||||| |||||||||||||| |||||||||||||||||||| |||| |
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| T |
32174590 |
caggtgacactttcaggactattgaatgcagtagatggtctttggtcgtgctgtggagaagaacacataattgtattcacaacaaatcacaaagacaggc |
32174491 |
T |
|
| Q |
301 |
ttgatcctgctctgctaaggcctggtagaatggacaagcaaattcacttgtcatattgcaac |
362 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32174490 |
ttgatcctgctctgttaaggcctggtagaatggacaaacaaattcacttgtcatattgcaac |
32174429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 175 - 362
Target Start/End: Complemental strand, 32182702 - 32182515
Alignment:
| Q |
175 |
aaattaacgtttgttgataatgtcaacaggtgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgt |
274 |
Q |
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| T |
32182702 |
aaattaacgtttgttgataatgtcaacaggtgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgt |
32182603 |
T |
|
| Q |
275 |
tttcacaacaaatcacaaagaaaggcttgatcctgctctgctaaggcctggtagaatggacaagcaaattcacttgtcatattgcaac |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32182602 |
tttcacaacaaatcacaaagaaaggcttgatcctgctctgctaaggcctggtagaatggacaagcaaattcacttgtcatattgcaac |
32182515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 197 - 362
Target Start/End: Complemental strand, 32110634 - 32110469
Alignment:
| Q |
197 |
tcaacaggtgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgttttcacaacaaatcacaaagaa |
296 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32110634 |
tcaacagatgacactttcaggactattgaatgcagtagatggtctttggtcatgctgtggagaagaacacataattgttttcacaacaaatcacaaagac |
32110535 |
T |
|
| Q |
297 |
aggcttgatcctgctctgctaaggcctggtagaatggacaagcaaattcacttgtcatattgcaac |
362 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32110534 |
agacttgatcctgctctgctaaggcctggtagaatggacaagcaaattcacttgtcatattgcaac |
32110469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 195 - 362
Target Start/End: Complemental strand, 32156820 - 32156653
Alignment:
| Q |
195 |
tgtcaacaggtgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgttttcacaacaaatcacaaag |
294 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32156820 |
tgtcaacaggtgacactttcaggactattgaatgcagtagatggtctttggtcatgctgtggagaagaacacataattgttttcacaacaaatcacaaag |
32156721 |
T |
|
| Q |
295 |
aaaggcttgatcctgctctgctaaggcctggtagaatggacaagcaaattcacttgtcatattgcaac |
362 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
32156720 |
aaaggcttgatcctgctctattaaggcctggtagaatagacaagcagattcacttgtcatattgcaac |
32156653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 178 - 362
Target Start/End: Complemental strand, 32118917 - 32118733
Alignment:
| Q |
178 |
ttaacgtttgttgataatgtcaacaggtgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgtttt |
277 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||| || |
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| T |
32118917 |
ttaacgtttgttgatattgtcaacaggtgacactttcaggactattgaatgctgttgatggtctttggtcatgctgcggagaagaacacataattgtatt |
32118818 |
T |
|
| Q |
278 |
cacaacaaatcacaaagaaaggcttgatcctgctctgctaaggcctggtagaatggacaagcaaattcacttgtcatattgcaac |
362 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32118817 |
cacaacaaatcacaaagacaggcttgatcctgctctattaagacctggtagaatggacaagcacattcacttgtcatattgcaac |
32118733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 200 - 362
Target Start/End: Complemental strand, 32157925 - 32157763
Alignment:
| Q |
200 |
acaggtgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgttttcacaacaaatcacaaagaaagg |
299 |
Q |
| |
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|||| |||||||||| |||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
32157925 |
acagatgacactttcgggactattgaatgcgacagatggtctctggtcgtgctgtggagaagaacacataattgttttcacaacaaatcacaaagacagg |
32157826 |
T |
|
| Q |
300 |
cttgatcctgctctgctaaggcctggtagaatggacaagcaaattcacttgtcatattgcaac |
362 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32157825 |
cttgatcctgctctattaaggcctggtagaatggacaagcaaattcacttgtcatattgcaac |
32157763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 197 - 362
Target Start/End: Original strand, 32206826 - 32206991
Alignment:
| Q |
197 |
tcaacaggtgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgttttcacaacaaatcacaaagaa |
296 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |
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|
| T |
32206826 |
tcaacaggtgacactttcaggactgttgaatgcagtagatggtctttggtcatgctgtggagaagaacacataattgtattcacaacaaatcacaaagac |
32206925 |
T |
|
| Q |
297 |
aggcttgatcctgctctgctaaggcctggtagaatggacaagcaaattcacttgtcatattgcaac |
362 |
Q |
| |
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| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32206926 |
aagcttgatcctgctctgctaagacctggtagaatggacaagcaaattcacttgtcatattgcaac |
32206991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 200 - 362
Target Start/End: Original strand, 32211904 - 32212066
Alignment:
| Q |
200 |
acaggtgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgttttcacaacaaatcacaaagaaagg |
299 |
Q |
| |
|
|||| |||||||||| |||||||||||||| ||||||||||||||| || |||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
32211904 |
acagatgacactttcgggactattgaatgcagtagatggtctttggtcgtgctgtggagaagaacacataattgttgtcacaacaaatcacaaagaaagg |
32212003 |
T |
|
| Q |
300 |
cttgatcctgctctgctaaggcctggtagaatggacaagcaaattcacttgtcatattgcaac |
362 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32212004 |
cttgatcctgctctattaaggcctggtagaatggacaagcaaattcacttgtcatattgcaac |
32212066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 32182826 - 32182707
Alignment:
| Q |
4 |
ataatggatacaataaggtatatatcattcttcaaatatatcattaatatttgggtttcattcatactaaaatatcattgggatgcataagaacaagaaa |
103 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||| ||| ||||| |
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| T |
32182826 |
ataatggagacaataaggtatatatttttcttcaaatataccattaatatttgagtttcattcatactaaaatgtcattgggatgcataaaaactagaaa |
32182727 |
T |
|
| Q |
104 |
agatttagaagtatatgagc |
123 |
Q |
| |
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|||||||||||||||||||| |
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| T |
32182726 |
agatttagaagtatatgagc |
32182707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 303 - 362
Target Start/End: Complemental strand, 32152639 - 32152580
Alignment:
| Q |
303 |
gatcctgctctgctaaggcctggtagaatggacaagcaaattcacttgtcatattgcaac |
362 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||||||||||||||| ||||||||||||||| |
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|
| T |
32152639 |
gatcatgctctgttaaggcctggtaaaatggacaagcaaattcatttgtcatattgcaac |
32152580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 32157095 - 32156933
Alignment:
| Q |
16 |
ataaggtatatatcattcttcaaatatatcattaatatttgggtttcattcatactaaaatatcattgggatgcataagaacaagaaaagatttagaagt |
115 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||| |||| ||||||||| ||||||||| ||| ||||||||| ||| |||| | ||| | || |
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| T |
32157095 |
ataaggtgtatatttttcttcaaatatatcattaatctttgagtttcattcgtactaaaatgtcacacagatgcataa-aactagaagatattaaaaata |
32156997 |
T |
|
| Q |
116 |
atatgagcgtacatgattctagtgtagatacatttaactatagtcataatttagccaagaaatt |
179 |
Q |
| |
|
|| | | ||||||| ||||| |||||| ||||||||| ||||||||||||||||| ||||| |
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|
| T |
32156996 |
attcaaccctacatgaatctagcttagatatatttaactacagtcataatttagccaacaaatt |
32156933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 331 - 362
Target Start/End: Original strand, 2821156 - 2821187
Alignment:
| Q |
331 |
tggacaagcaaattcacttgtcatattgcaac |
362 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
2821156 |
tggacaagcaaattcacttgtcatattgcaac |
2821187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 32211761 - 32211808
Alignment:
| Q |
1 |
ttgataatggatacaataaggtatatatcattcttcaaatatatcatt |
48 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| |||||||||||| |
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| T |
32211761 |
ttgataatggatacaataaggtatgtatttttctttaaatatatcatt |
32211808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 32119143 - 32119073
Alignment:
| Q |
5 |
taatggatacaataaggtatatatcattcttcaaatatatcattaatatttgggtttcattcatactaaaa |
75 |
Q |
| |
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||||||| |||||||||||| || || |||||||||||||| || |||| |||||||||||||||||| |
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|
| T |
32119143 |
taatggagacaataaggtatgcatttctcgtcaaatatatcattcatctttgagtttcattcatactaaaa |
32119073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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