View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6083_low_7 (Length: 289)

Name: NF6083_low_7
Description: NF6083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6083_low_7
NF6083_low_7
[»] chr1 (2 HSPs)
chr1 (14-270)||(7100785-7101041)
chr1 (14-231)||(7580238-7580455)
[»] chr5 (18 HSPs)
chr5 (14-245)||(17984269-17984500)
chr5 (14-174)||(29873553-29873713)
chr5 (14-170)||(29854690-29854846)
chr5 (14-205)||(30476754-30476945)
chr5 (14-231)||(30520135-30520352)
chr5 (14-231)||(30560475-30560692)
chr5 (14-225)||(30240909-30241120)
chr5 (96-242)||(30437259-30437405)
chr5 (14-170)||(30329412-30329568)
chr5 (14-234)||(30675795-30676015)
chr5 (14-234)||(30484780-30485000)
chr5 (14-234)||(30751025-30751245)
chr5 (14-174)||(30401456-30401616)
chr5 (14-172)||(17417237-17417395)
chr5 (14-234)||(30061751-30061971)
chr5 (14-174)||(30207901-30208061)
chr5 (14-174)||(30337092-30337252)
chr5 (14-224)||(30711945-30712155)
[»] chr4 (3 HSPs)
chr4 (36-229)||(13617991-13618182)
chr4 (14-207)||(52353340-52353533)
chr4 (14-234)||(20295089-20295309)
[»] chr3 (1 HSPs)
chr3 (14-194)||(25292494-25292674)
[»] chr7 (1 HSPs)
chr7 (14-172)||(26708696-26708854)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 7100785 - 7101041
Alignment:
Q  14 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa 113  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7100785 tcatcaaggatatcatcaagcacatacaccgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa 7100884  T
Q  114 gaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagatgtcaggtt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7100885 gaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagatgtcaggtt 7100984  T
Q  214 ctcaaacacaacatcaagcaaggcatcagtcannnnnnncagaatgggaaagtatgt 270  Q
    ||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  7100985 ctcaaacacaacatcaagcaaggcatcagtcatttttttcagaatgggaaagtatgt 7101041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 7580455 - 7580238
Alignment:
Q  14 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa 113  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| ||    
T  7580455 tcatcaaggatatcatcaagcacatacaccgcatctttgagttgctgcaaccatatttgaatagatcggtcagttaattgcttcttttcagcgtcttgaa 7580356  T
Q  114 gaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagatgtcaggtt 213  Q
    |||||||||| || |||||||||||  ||||||| |||| ||||||||||||||||||| ||||||||| ||||||||||| ||  |||||  |||||||    
T  7580355 gaacagccttgatcagttctaaggttcttgatagcttttgagcctttgacttgattccaaatagagttgaaaattcgttttgaaccagagacatcaggtt 7580256  T
Q  214 ctcaaacacaacatcaag 231  Q
     | |||||||||| ||||    
T  7580255 gtgaaacacaacaccaag 7580238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 17984269 - 17984500
Alignment:
Q  14 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa 113  Q
    ||||| |||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||| |    
T  17984269 tcatctaggatatcatcaagcacaaacaccgcatctttgagttgctgcagccatatttgaatagaacgatctgtcaaatgcttcttttcagcgtcttcga 17984368  T
Q  114 gaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagatgtcaggtt 213  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |  ||||   | ||||||    
T  17984369 gaacagcattaataagttctaaggtggttgatagtttttcagcctttgacttgattgcagatagagttgcaaattcattttgagcaagaagcgccaggtt 17984468  T
Q  214 ctcaaacacaacatcaagcaaggcatcagtca 245  Q
    || ||||||||||  ||| ||||| |||||||    
T  17984469 cttaaacacaacacgaagtaaggcgtcagtca 17984500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 29873553 - 29873713
Alignment:
Q  14 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa 113  Q
    ||||||||||||||||| || ||||| ||  ||||||||||||| || |||||||  | ||||||||||||||| | ||| ||||||||||| |||||||    
T  29873553 tcatcaaggatatcatcgagcacataaacaacatctttgagttgttgtagccataccttaatagagcggtctgtgacttgtttcttttcagcatcttcaa 29873652  T
Q  114 gaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccaga 174  Q
    |||||||||| || |  |||||||||||||||||||||||||||||||||||||| |||||    
T  29873653 gaacagccttgatcaaatctaaggtggttgatagtttttcagcctttgacttgataccaga 29873713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 29854690 - 29854846
Alignment:
Q  14 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa 113  Q
    ||||||||||||||||| || ||||| || |||||||||||||| || |||||||  | ||||||| ||||||| | ||| ||||||||||| |||||||    
T  29854690 tcatcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccataccttaatagagtggtctgtgacttgtttcttttcagcatcttcaa 29854789  T
Q  114 gaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattc 170  Q
    ||||||| || || |  ||||||||||||||||||||||||||||||||||||||||    
T  29854790 gaacagcattgatcaaatctaaggtggttgatagtttttcagcctttgacttgattc 29854846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 30476754 - 30476945
Alignment:
Q  14 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa 113  Q
    |||||||| ||||||||||| ||||| || |||||||||||||| || |||||||  | ||||||||||||||| |  || ||||  ||||| |||||||    
T  30476754 tcatcaagaatatcatcaagcacatatacagcatctttgagttgttggagccataccttaatagagcggtctgtgacctgtttctgctcagcatcttcaa 30476853  T
Q  114 gaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagat 205  Q
    |||||||||| || || || ||||||||||| |  ||||||||||||||  |||||||||| |  ||||||||||| |||| || |||||||    
T  30476854 gaacagccttgatcagatccaaggtggttgacaacttttcagcctttgatgtgattccagaaatggttgcaaattcattttgaacaagagat 30476945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 30520352 - 30520135
Alignment:
Q  14 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa 113  Q
    |||||||| |||||||| || |  || | ||||||||||||||| || |||||||  |  |||||||||||||||| ||| ||||| ||||| |||||||    
T  30520352 tcatcaagaatatcatctagtatgtagattgcatctttgagttgttgaagccatacctttatagagcggtctgttatttgtttcttctcagcatcttcaa 30520253  T
Q  114 gaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagatgtcaggtt 213  Q
    |||| ||||| || |  ||||||||||||||||| |||  |||||| |||||||||||||| |  ||||||||||| |||| || |||||||   || ||    
T  30520252 gaacggccttgatcaaatctaaggtggttgatagctttagagccttggacttgattccagaaatggttgcaaattcattttgaacaagagatagtagatt 30520153  T
Q  214 ctcaaacacaacatcaag 231  Q
     |||||||||||| ||||    
T  30520152 ttcaaacacaacaccaag 30520135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 30560692 - 30560475
Alignment:
Q  14 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa 113  Q
    |||||||| |||||||| || |  || | ||||||||||||||| || |||||||  |  |||||||||||||||| ||| ||||| ||||| |||||||    
T  30560692 tcatcaagaatatcatctagtatgtagattgcatctttgagttgttgaagccatacctttatagagcggtctgttatttgtttcttctcagcatcttcaa 30560593  T
Q  114 gaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagatgtcaggtt 213  Q
    |||| ||||| || |  ||||||||||||||||| |||  |||||| |||||||||||||| |  ||||||||||| |||| || |||||||   || ||    
T  30560592 gaacggccttgatcaaatctaaggtggttgatagctttagagccttggacttgattccagaaatggttgcaaattcattttgaacaagagatagtagatt 30560493  T
Q  214 ctcaaacacaacatcaag 231  Q
     |||||||||||| ||||    
T  30560492 ttcaaacacaacaccaag 30560475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 30241120 - 30240909
Alignment:
Q  14 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa 113  Q
    ||||||||||||||||| || ||||| ||  ||||||||||||| ||||||||||  | |||||||| |||||| | ||| ||||| ||||| |||||||    
T  30241120 tcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccataccttaatagagcagtctgtgacttgtttcttctcagcatcttcaa 30241021  T
Q  114 gaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagatgtcaggtt 213  Q
    |||| || || || |  |||||||||  ||| || |||| ||||||||||||||||||||| |  ||||||||||| ||||  || |||||  ||| |||    
T  30241020 gaacggctttgatcatatctaaggtgtctgacagcttttgagcctttgacttgattccagaaatggttgcaaattcattttgtaggagagacttcaagtt 30240921  T
Q  214 ctcaaacacaac 225  Q
     |||||||||||    
T  30240920 atcaaacacaac 30240909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 96 - 242
Target Start/End: Original strand, 30437259 - 30437405
Alignment:
Q  96 tcttttcagcgtcttcaagaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgttttt 195  Q
    |||||||||| ||||||||||||||||| ||     |||||||||||||||| |||||||||||||||||||||||||| | ||| | |||||| ||||     
T  30437259 tcttttcagcatcttcaagaacagccttgatgtcaactaaggtggttgataggttttcagcctttgacttgattccagaaatagtagaaaattcattttg 30437358  T
Q  196 aagaagagatgtcaggttctcaaacacaacatcaagcaaggcatcag 242  Q
    ||| |||||| |||  ||||||||||||||  |||| |||| |||||    
T  30437359 aagcagagatatcaaattctcaaacacaactccaagaaagggatcag 30437405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 30329568 - 30329412
Alignment:
Q  14 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa 113  Q
    |||||||||||||||||||| ||||| |   ||||||||| ||| || |||||||| | ||||||||||||||  | |||||| |  ||| | |||||||    
T  30329568 tcatcaaggatatcatcaagcacatatatatcatctttgatttgttgaagccatatcttaatagagcggtctgagacttgcttatgctcaacatcttcaa 30329469  T
Q  114 gaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattc 170  Q
    ||||| |||| ||||| ||||||||||||||||| |||| ||| ||  |||||||||    
T  30329468 gaacaaccttgataagatctaaggtggttgatagcttttgagcattaaacttgattc 30329412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 30676015 - 30675795
Alignment:
Q  14 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa 113  Q
    ||||||||||||||||| || ||||| || ||||||||||| |  || | |||||  | ||||||| | ||| | ||||| ||||| ||||| |||||||    
T  30676015 tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa 30675916  T
Q  114 gaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagatgtcaggtt 213  Q
    |||||||||| ||  |  ||||| || ||||||| |||| | ||||||||||||||||||| |  |||| |||||| |||| ||| ||||| ||||  ||    
T  30675915 gaacagccttgatgtgaactaagttgtttgatagcttttgaacctttgacttgattccagaaatggttgaaaattcattttgaaggagagacgtcaaatt 30675816  T
Q  214 ctcaaacacaacatcaagcaa 234  Q
     |||||||||||  |||||||    
T  30675815 ttcaaacacaactccaagcaa 30675795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 30484780 - 30485000
Alignment:
Q  14 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa 113  Q
    ||||||||||||||||| || ||||| || ||||||||||| |  || | |||||  | ||||||| | ||| | ||||| ||||| ||||| |||||||    
T  30484780 tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa 30484879  T
Q  114 gaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagatgtcaggtt 213  Q
    ||||||| || ||  |  ||||| ||  |||||| |||| ||||||||||||||||||||| |  |||| |||||| |||| ||| ||||||||||  ||    
T  30484880 gaacagctttgatgtgaactaagttgtctgatagcttttgagcctttgacttgattccagaaatggttgaaaattcattttgaaggagagatgtcaaatt 30484979  T
Q  214 ctcaaacacaacatcaagcaa 234  Q
     || ||||||||  |||||||    
T  30484980 ttcgaacacaactccaagcaa 30485000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 30751025 - 30751245
Alignment:
Q  14 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa 113  Q
    ||||||||||||||||| || ||||| || ||||||||||| |  || | |||||  | ||||||| | ||| | ||||| ||||| ||||| |||||||    
T  30751025 tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa 30751124  T
Q  114 gaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagatgtcaggtt 213  Q
    |||||||||| ||  |  ||||| ||  |||||| |||| |||||||||||| |||||||| |  |||| |||||| |||| ||| ||||| ||||  ||    
T  30751125 gaacagccttgatgcgaactaagttgtctgatagcttttgagcctttgacttaattccagaaatggttgaaaattcattttgaaggagagacgtcaaatt 30751224  T
Q  214 ctcaaacacaacatcaagcaa 234  Q
     |||||||||||  |||||||    
T  30751225 ttcaaacacaactccaagcaa 30751245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 30401456 - 30401616
Alignment:
Q  14 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa 113  Q
    ||||||||||||||||| || ||||| || |||||||||||||| || |||||||  | |||| ||| |||| | | |||  |||| ||||| ||| |||    
T  30401456 tcatcaaggatatcatcgagcacataaacagcatctttgagttgttggagccataccttaatatagctgtctttgacttgtctcttctcagcatctacaa 30401555  T
Q  114 gaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccaga 174  Q
    |||||||||  ||  | | ||||| ||||||||| ||||  ||||||||||||||||||||    
T  30401556 gaacagcctcgatgtgatttaaggaggttgataggtttttggcctttgacttgattccaga 30401616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 172
Target Start/End: Complemental strand, 17417395 - 17417237
Alignment:
Q  14 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa 113  Q
    |||||||| |||||||| || ||||| ||  ||||||||||||| || |||||||  |   ||||||| ||||| | ||| || |  ||||| |||||||    
T  17417395 tcatcaagaatatcatctagcacataaacaacatctttgagttgttgaagccataccttgttagagcgatctgtgacttgtttatgctcagcatcttcaa 17417296  T
Q  114 gaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattcca 172  Q
    |||||||||| || || || |||||||||||||| |||||  |||||||||| ||||||    
T  17417295 gaacagccttgatcagatccaaggtggttgatagcttttcgacctttgacttaattcca 17417237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 30061751 - 30061971
Alignment:
Q  14 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa 113  Q
    ||||||||||||||||| || ||||| ||  |||||||||| |  || | |||||  | ||||||| | ||| | ||||| ||||| ||||| |||||||    
T  30061751 tcatcaaggatatcatcgagcacataaacaccatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa 30061850  T
Q  114 gaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagatgtcaggtt 213  Q
    |||||||||| ||  |  ||||| || ||||||| |||| | |||||||||| |||||||| |  |||| |||||| |||| ||| ||||  ||||  ||    
T  30061851 gaacagccttgatgtgaactaagttgtttgatagcttttgaacctttgacttaattccagaaatggttgaaaattcattttgaaggagagccgtcaaatt 30061950  T
Q  214 ctcaaacacaacatcaagcaa 234  Q
     |||||||||||  |||||||    
T  30061951 ttcaaacacaactccaagcaa 30061971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 30207901 - 30208061
Alignment:
Q  14 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa 113  Q
    ||||||||||||||||| || ||||| || |||||||||||||| || |||||||  |  |||||||| |   | | ||||||||  ||||| |||||||    
T  30207901 tcatcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccatacctttatagagcgattgatgacttgcttctgctcagcatcttcaa 30208000  T
Q  114 gaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccaga 174  Q
    ||||||| || |  |  |||||||||||||| || || | |||||| ||||||||||||||    
T  30208001 gaacagcgttgaccaaatctaaggtggttgaaagcttctgagccttggacttgattccaga 30208061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 30337252 - 30337092
Alignment:
Q  14 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa 113  Q
    ||||||||||||||||| || ||||| || ||||||||||| |  || | |||||  | ||||||| | ||| | ||||| ||||| ||||| |||||||    
T  30337252 tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa 30337153  T
Q  114 gaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccaga 174  Q
    |||||||||| ||  |  ||||| ||  |||||| |||| |||||||||||| ||||||||    
T  30337152 gaacagccttgatgtgaactaagttgtctgatagcttttgagcctttgacttaattccaga 30337092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 30712155 - 30711945
Alignment:
Q  14 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa 113  Q
    ||||||||||||||||| || ||||| || ||||||||||| |  || | |||||  | ||||||| | ||| | ||||| ||||| ||||| |||||||    
T  30712155 tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa 30712056  T
Q  114 gaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagatgtcaggtt 213  Q
    |||||||||| ||  |  ||||| ||  |||||| |||| | ||||||| ||||||||||| |  || | |||||| |||| ||| ||||| |||| |||    
T  30712055 gaacagccttgatgtgaactaagttgtctgatagcttttgaacctttgatttgattccagaaatggtagaaaattcattttgaaggagagacgtcaagtt 30711956  T
Q  214 ctcaaacacaa 224  Q
     ||||| ||||    
T  30711955 ttcaaaaacaa 30711945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 36 - 229
Target Start/End: Original strand, 13617991 - 13618182
Alignment:
Q  36 catacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaagaacagccttaataagttctaa 135  Q
    |||||| |||||||| |||||| || |||||||||| |||||||| | || |||||||||||||||||| ||||||||||||| ||||||| ||||| ||    
T  13617991 catacattgcatcttcgagttgttggagccatattttaatagagcagactcttaattgcttcttttcagtgtcttcaagaacaaccttaatcagttccaa 13618090  T
Q  136 ggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagatgtcaggttctcaaacacaacatca 229  Q
    |  ||||||||| |||| |||||||| | |||||||| |||||||| |||||||||||||||| ||| |  ||||| ||||||||| |||||||    
T  13618091 g--ggttgatagcttttgagcctttggcatgattccaaatagagttacaaattcgtttttaagtagaaacctcaggctctcaaacaaaacatca 13618182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 52353340 - 52353533
Alignment:
Q  14 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa 113  Q
    ||||||||||||||||| ||||| || || ||||||||||||||||| ||||||| || ||||||||||||||| | ||| ||||  ||||| |||||||    
T  52353340 tcatcaaggatatcatcgagaacgtaaacagcatctttgagttgctgaagccatactttaatagagcggtctgtgacttgtttctgctcagcatcttcaa 52353439  T
Q  114 gaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagatgt 207  Q
    |||| ||||| || || ||||| ||| |||| || |||||||| ||||||||||||  |||||  || | |||||| |||| ||| ||||||||    
T  52353440 gaactgccttgatgagatctaacgtgtttgacaggttttcagcttttgacttgattgaagatacggtggaaaattcattttgaagtagagatgt 52353533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 20295309 - 20295089
Alignment:
Q  14 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa 113  Q
    ||||||||||||||| | || ||||| || ||||||||||| |  || | ||||   | ||||||| | ||| | ||||| ||||| ||||| |||||||    
T  20295309 tcatcaaggatatcaccgagcacataaacagcatctttgaggtcttgtaaccattgcttaatagagagttctttgaattgtttcttctcagcatcttcaa 20295210  T
Q  114 gaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagatgtcaggtt 213  Q
    |||||||||| ||  |  ||||| ||  |||||| |||  |||||||||| |||||||||| |  ||||||||||| |||| ||| ||||| ||||  ||    
T  20295209 gaacagccttgatgtgaactaagttgtctgatagctttcgagcctttgacctgattccagaaatggttgcaaattcattttgaaggagagacgtcaaatt 20295110  T
Q  214 ctcaaacacaacatcaagcaa 234  Q
     ||| |||||||  |||||||    
T  20295109 ttcagacacaactccaagcaa 20295089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 25292674 - 25292494
Alignment:
Q  14 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa 113  Q
    ||||||||||||||||| || ||||| ||  ||||||||||||| || |||||||  | ||||||||| ||||| | ||| ||||  ||||| |||||||    
T  25292674 tcatcaaggatatcatcgagcacatatacaacatctttgagttgttgtagccataccttaatagagcgatctgtgacttgtttctgctcagcatcttcaa 25292575  T
Q  114 gaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttt 194  Q
    |||||||||  || || || |||||| ||||||| |||||||| ||||||||||||| ||| |  ||||||||||| ||||    
T  25292574 gaacagcctatatcagatccaaggtgattgatagcttttcagcttttgacttgattctagaaatggttgcaaattcatttt 25292494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 172
Target Start/End: Original strand, 26708696 - 26708854
Alignment:
Q  14 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa 113  Q
    ||||||||||| ||||| || ||||| ||  |||||||||| |  || |||||||  | |||| ||  |||||| | |||  |||| ||||| |||||||    
T  26708696 tcatcaaggatgtcatcgagcacatatacaacatctttgaggtcttgtagccataccttaataaagttgtctgtgacttgtctcttctcagcatcttcaa 26708795  T
Q  114 gaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattcca 172  Q
    |||| ||| ||||     |||||||||||||||| ||||||||||||||||||||||||    
T  26708796 gaacggccctaatgtcaactaaggtggttgataggttttcagcctttgacttgattcca 26708854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University