View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6083_low_9 (Length: 276)

Name: NF6083_low_9
Description: NF6083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6083_low_9
NF6083_low_9
[»] chr1 (2 HSPs)
chr1 (12-257)||(7100796-7101041)
chr1 (12-218)||(7580238-7580444)
[»] chr5 (16 HSPs)
chr5 (12-232)||(17984280-17984500)
chr5 (32-161)||(29873584-29873713)
chr5 (12-157)||(29854701-29854846)
chr5 (30-218)||(30520135-30520323)
chr5 (30-218)||(30560475-30560663)
chr5 (12-192)||(30476765-30476945)
chr5 (83-229)||(30437259-30437405)
chr5 (32-212)||(30240909-30241089)
chr5 (32-157)||(30329412-30329537)
chr5 (76-221)||(30675795-30675940)
chr5 (76-221)||(30484855-30485000)
chr5 (76-221)||(30751100-30751245)
chr5 (88-159)||(17417237-17417308)
chr5 (76-221)||(30061826-30061971)
chr5 (12-161)||(30401467-30401616)
chr5 (76-161)||(30337092-30337177)
[»] chr4 (3 HSPs)
chr4 (23-216)||(13617991-13618182)
chr4 (12-194)||(52353351-52353533)
chr4 (76-221)||(20295089-20295234)
[»] chr3 (1 HSPs)
chr3 (32-181)||(25292494-25292643)
[»] chr7 (1 HSPs)
chr7 (119-159)||(26708814-26708854)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 7100796 - 7101041
Alignment:
Q  12 atcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaagaacagcctta 111  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7100796 atcatcaagcacatacaccgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaagaacagcctta 7100895  T
Q  112 ataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagatgtcaggttctcaaacacaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7100896 ataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagatgtcaggttctcaaacacaa 7100995  T
Q  212 catcaagcaaggcatcagtcannnnnnncagaatgggaaagtatgt 257  Q
    |||||||||||||||||||||       ||||||||||||||||||    
T  7100996 catcaagcaaggcatcagtcatttttttcagaatgggaaagtatgt 7101041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 7580444 - 7580238
Alignment:
Q  12 atcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaagaacagcctta 111  Q
    ||||||||| |||||||| ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||     
T  7580444 atcatcaagcacatacaccgcatctttgagttgctgcaaccatatttgaatagatcggtcagttaattgcttcttttcagcgtcttgaagaacagccttg 7580345  T
Q  112 ataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagatgtcaggttctcaaacacaa 211  Q
    || |||||||||||  ||||||| |||| ||||||||||||||||||| ||||||||| ||||||||||| ||  |||||  ||||||| | ||||||||    
T  7580344 atcagttctaaggttcttgatagcttttgagcctttgacttgattccaaatagagttgaaaattcgttttgaaccagagacatcaggttgtgaaacacaa 7580245  T
Q  212 catcaag 218  Q
    || ||||    
T  7580244 caccaag 7580238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 8e-67; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 17984280 - 17984500
Alignment:
Q  12 atcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaagaacagcctta 111  Q
    ||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||| |||||||| |||    
T  17984280 atcatcaagcacaaacaccgcatctttgagttgctgcagccatatttgaatagaacgatctgtcaaatgcttcttttcagcgtcttcgagaacagcatta 17984379  T
Q  112 ataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagatgtcaggttctcaaacacaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |  ||||   | |||||||| ||||||||    
T  17984380 ataagttctaaggtggttgatagtttttcagcctttgacttgattgcagatagagttgcaaattcattttgagcaagaagcgccaggttcttaaacacaa 17984479  T
Q  212 catcaagcaaggcatcagtca 232  Q
    ||  ||| ||||| |||||||    
T  17984480 cacgaagtaaggcgtcagtca 17984500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 32 - 161
Target Start/End: Original strand, 29873584 - 29873713
Alignment:
Q  32 catctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaagaacagccttaataagttctaaggtggttga 131  Q
    ||||||||||||| || |||||||  | ||||||||||||||| | ||| ||||||||||| ||||||||||||||||| || |  ||||||||||||||    
T  29873584 catctttgagttgttgtagccataccttaatagagcggtctgtgacttgtttcttttcagcatcttcaagaacagccttgatcaaatctaaggtggttga 29873683  T
Q  132 tagtttttcagcctttgacttgattccaga 161  Q
    |||||||||||||||||||||||| |||||    
T  29873684 tagtttttcagcctttgacttgataccaga 29873713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 157
Target Start/End: Original strand, 29854701 - 29854846
Alignment:
Q  12 atcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaagaacagcctta 111  Q
    |||||| || ||||| || |||||||||||||| || |||||||  | ||||||| ||||||| | ||| ||||||||||| |||||||||||||| ||     
T  29854701 atcatcgagcacataaacagcatctttgagttgttgtagccataccttaatagagtggtctgtgacttgtttcttttcagcatcttcaagaacagcattg 29854800  T
Q  112 ataagttctaaggtggttgatagtttttcagcctttgacttgattc 157  Q
    || |  ||||||||||||||||||||||||||||||||||||||||    
T  29854801 atcaaatctaaggtggttgatagtttttcagcctttgacttgattc 29854846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 218
Target Start/End: Complemental strand, 30520323 - 30520135
Alignment:
Q  30 tgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaagaacagccttaataagttctaaggtggtt 129  Q
    ||||||||||||||| || |||||||  |  |||||||||||||||| ||| ||||| ||||| ||||||||||| ||||| || |  ||||||||||||    
T  30520323 tgcatctttgagttgttgaagccatacctttatagagcggtctgttatttgtttcttctcagcatcttcaagaacggccttgatcaaatctaaggtggtt 30520224  T
Q  130 gatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagatgtcaggttctcaaacacaacatcaag 218  Q
    ||||| |||  |||||| |||||||||||||| |  ||||||||||| |||| || |||||||   || || |||||||||||| ||||    
T  30520223 gatagctttagagccttggacttgattccagaaatggttgcaaattcattttgaacaagagatagtagattttcaaacacaacaccaag 30520135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 218
Target Start/End: Complemental strand, 30560663 - 30560475
Alignment:
Q  30 tgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaagaacagccttaataagttctaaggtggtt 129  Q
    ||||||||||||||| || |||||||  |  |||||||||||||||| ||| ||||| ||||| ||||||||||| ||||| || |  ||||||||||||    
T  30560663 tgcatctttgagttgttgaagccatacctttatagagcggtctgttatttgtttcttctcagcatcttcaagaacggccttgatcaaatctaaggtggtt 30560564  T
Q  130 gatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagatgtcaggttctcaaacacaacatcaag 218  Q
    ||||| |||  |||||| |||||||||||||| |  ||||||||||| |||| || |||||||   || || |||||||||||| ||||    
T  30560563 gatagctttagagccttggacttgattccagaaatggttgcaaattcattttgaacaagagatagtagattttcaaacacaacaccaag 30560475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 30476765 - 30476945
Alignment:
Q  12 atcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaagaacagcctta 111  Q
    ||||||||| ||||| || |||||||||||||| || |||||||  | ||||||||||||||| |  || ||||  ||||| |||||||||||||||||     
T  30476765 atcatcaagcacatatacagcatctttgagttgttggagccataccttaatagagcggtctgtgacctgtttctgctcagcatcttcaagaacagccttg 30476864  T
Q  112 ataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagat 192  Q
    || || || ||||||||||| |  ||||||||||||||  |||||||||| |  ||||||||||| |||| || |||||||    
T  30476865 atcagatccaaggtggttgacaacttttcagcctttgatgtgattccagaaatggttgcaaattcattttgaacaagagat 30476945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 83 - 229
Target Start/End: Original strand, 30437259 - 30437405
Alignment:
Q  83 tcttttcagcgtcttcaagaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgttttt 182  Q
    |||||||||| ||||||||||||||||| ||     |||||||||||||||| |||||||||||||||||||||||||| | ||| | |||||| ||||     
T  30437259 tcttttcagcatcttcaagaacagccttgatgtcaactaaggtggttgataggttttcagcctttgacttgattccagaaatagtagaaaattcattttg 30437358  T
Q  183 aagaagagatgtcaggttctcaaacacaacatcaagcaaggcatcag 229  Q
    ||| |||||| |||  ||||||||||||||  |||| |||| |||||    
T  30437359 aagcagagatatcaaattctcaaacacaactccaagaaagggatcag 30437405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 212
Target Start/End: Complemental strand, 30241089 - 30240909
Alignment:
Q  32 catctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaagaacagccttaataagttctaaggtggttga 131  Q
    ||||||||||||| ||||||||||  | |||||||| |||||| | ||| ||||| ||||| ||||||||||| || || || |  |||||||||  |||    
T  30241089 catctttgagttgttgcagccataccttaatagagcagtctgtgacttgtttcttctcagcatcttcaagaacggctttgatcatatctaaggtgtctga 30240990  T
Q  132 tagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagatgtcaggttctcaaacacaac 212  Q
     || |||| ||||||||||||||||||||| |  ||||||||||| ||||  || |||||  ||| ||| |||||||||||    
T  30240989 cagcttttgagcctttgacttgattccagaaatggttgcaaattcattttgtaggagagacttcaagttatcaaacacaac 30240909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 157
Target Start/End: Complemental strand, 30329537 - 30329412
Alignment:
Q  32 catctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaagaacagccttaataagttctaaggtggttga 131  Q
    ||||||||| ||| || |||||||| | ||||||||||||||  | |||||| |  ||| | |||||||||||| |||| ||||| ||||||||||||||    
T  30329537 catctttgatttgttgaagccatatcttaatagagcggtctgagacttgcttatgctcaacatcttcaagaacaaccttgataagatctaaggtggttga 30329438  T
Q  132 tagtttttcagcctttgacttgattc 157  Q
    ||| |||| ||| ||  |||||||||    
T  30329437 tagcttttgagcattaaacttgattc 30329412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 30675940 - 30675795
Alignment:
Q  76 aattgcttcttttcagcgtcttcaagaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaatt 175  Q
    ||||| ||||| ||||| ||||||||||||||||| ||  |  ||||| || ||||||| |||| | ||||||||||||||||||| |  |||| |||||    
T  30675940 aattgtttcttctcagcatcttcaagaacagccttgatgtgaactaagttgtttgatagcttttgaacctttgacttgattccagaaatggttgaaaatt 30675841  T
Q  176 cgtttttaagaagagatgtcaggttctcaaacacaacatcaagcaa 221  Q
    | |||| ||| ||||| ||||  || |||||||||||  |||||||    
T  30675840 cattttgaaggagagacgtcaaattttcaaacacaactccaagcaa 30675795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 30484855 - 30485000
Alignment:
Q  76 aattgcttcttttcagcgtcttcaagaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaatt 175  Q
    ||||| ||||| ||||| |||||||||||||| || ||  |  ||||| ||  |||||| |||| ||||||||||||||||||||| |  |||| |||||    
T  30484855 aattgtttcttctcagcatcttcaagaacagctttgatgtgaactaagttgtctgatagcttttgagcctttgacttgattccagaaatggttgaaaatt 30484954  T
Q  176 cgtttttaagaagagatgtcaggttctcaaacacaacatcaagcaa 221  Q
    | |||| ||| ||||||||||  || || ||||||||  |||||||    
T  30484955 cattttgaaggagagatgtcaaattttcgaacacaactccaagcaa 30485000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 30751100 - 30751245
Alignment:
Q  76 aattgcttcttttcagcgtcttcaagaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaatt 175  Q
    ||||| ||||| ||||| ||||||||||||||||| ||  |  ||||| ||  |||||| |||| |||||||||||| |||||||| |  |||| |||||    
T  30751100 aattgtttcttctcagcatcttcaagaacagccttgatgcgaactaagttgtctgatagcttttgagcctttgacttaattccagaaatggttgaaaatt 30751199  T
Q  176 cgtttttaagaagagatgtcaggttctcaaacacaacatcaagcaa 221  Q
    | |||| ||| ||||| ||||  || |||||||||||  |||||||    
T  30751200 cattttgaaggagagacgtcaaattttcaaacacaactccaagcaa 30751245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 159
Target Start/End: Complemental strand, 17417308 - 17417237
Alignment:
Q  88 tcagcgtcttcaagaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattcca 159  Q
    ||||| ||||||||||||||||| || || || |||||||||||||| |||||  |||||||||| ||||||    
T  17417308 tcagcatcttcaagaacagccttgatcagatccaaggtggttgatagcttttcgacctttgacttaattcca 17417237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 30061826 - 30061971
Alignment:
Q  76 aattgcttcttttcagcgtcttcaagaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaatt 175  Q
    ||||| ||||| ||||| ||||||||||||||||| ||  |  ||||| || ||||||| |||| | |||||||||| |||||||| |  |||| |||||    
T  30061826 aattgtttcttctcagcatcttcaagaacagccttgatgtgaactaagttgtttgatagcttttgaacctttgacttaattccagaaatggttgaaaatt 30061925  T
Q  176 cgtttttaagaagagatgtcaggttctcaaacacaacatcaagcaa 221  Q
    | |||| ||| ||||  ||||  || |||||||||||  |||||||    
T  30061926 cattttgaaggagagccgtcaaattttcaaacacaactccaagcaa 30061971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 30401467 - 30401616
Alignment:
Q  12 atcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaagaacagcctta 111  Q
    |||||| || ||||| || |||||||||||||| || |||||||  | |||| ||| |||| | | |||  |||| ||||| ||| ||||||||||||      
T  30401467 atcatcgagcacataaacagcatctttgagttgttggagccataccttaatatagctgtctttgacttgtctcttctcagcatctacaagaacagcctcg 30401566  T
Q  112 ataagttctaaggtggttgatagtttttcagcctttgacttgattccaga 161  Q
    ||  | | ||||| ||||||||| ||||  ||||||||||||||||||||    
T  30401567 atgtgatttaaggaggttgataggtttttggcctttgacttgattccaga 30401616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 30337177 - 30337092
Alignment:
Q  76 aattgcttcttttcagcgtcttcaagaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccaga 161  Q
    ||||| ||||| ||||| ||||||||||||||||| ||  |  ||||| ||  |||||| |||| |||||||||||| ||||||||    
T  30337177 aattgtttcttctcagcatcttcaagaacagccttgatgtgaactaagttgtctgatagcttttgagcctttgacttaattccaga 30337092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 13617991 - 13618182
Alignment:
Q  23 catacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaagaacagccttaataagttctaa 122  Q
    |||||| |||||||| |||||| || |||||||||| |||||||| | || |||||||||||||||||| ||||||||||||| ||||||| ||||| ||    
T  13617991 catacattgcatcttcgagttgttggagccatattttaatagagcagactcttaattgcttcttttcagtgtcttcaagaacaaccttaatcagttccaa 13618090  T
Q  123 ggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagatgtcaggttctcaaacacaacatca 216  Q
    |  ||||||||| |||| |||||||| | |||||||| |||||||| |||||||||||||||| ||| |  ||||| ||||||||| |||||||    
T  13618091 g--ggttgatagcttttgagcctttggcatgattccaaatagagttacaaattcgtttttaagtagaaacctcaggctctcaaacaaaacatca 13618182  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 52353351 - 52353533
Alignment:
Q  12 atcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaagaacagcctta 111  Q
    |||||| ||||| || || ||||||||||||||||| ||||||| || ||||||||||||||| | ||| ||||  ||||| ||||||||||| |||||     
T  52353351 atcatcgagaacgtaaacagcatctttgagttgctgaagccatactttaatagagcggtctgtgacttgtttctgctcagcatcttcaagaactgccttg 52353450  T
Q  112 ataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaattcgtttttaagaagagatgt 194  Q
    || || ||||| ||| |||| || |||||||| ||||||||||||  |||||  || | |||||| |||| ||| ||||||||    
T  52353451 atgagatctaacgtgtttgacaggttttcagcttttgacttgattgaagatacggtggaaaattcattttgaagtagagatgt 52353533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 20295234 - 20295089
Alignment:
Q  76 aattgcttcttttcagcgtcttcaagaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattccagatagagttgcaaatt 175  Q
    ||||| ||||| ||||| ||||||||||||||||| ||  |  ||||| ||  |||||| |||  |||||||||| |||||||||| |  ||||||||||    
T  20295234 aattgtttcttctcagcatcttcaagaacagccttgatgtgaactaagttgtctgatagctttcgagcctttgacctgattccagaaatggttgcaaatt 20295135  T
Q  176 cgtttttaagaagagatgtcaggttctcaaacacaacatcaagcaa 221  Q
    | |||| ||| ||||| ||||  || ||| |||||||  |||||||    
T  20295134 cattttgaaggagagacgtcaaattttcagacacaactccaagcaa 20295089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 181
Target Start/End: Complemental strand, 25292643 - 25292494
Alignment:
Q  32 catctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaagaacagccttaataagttctaaggtggttga 131  Q
    ||||||||||||| || |||||||  | ||||||||| ||||| | ||| ||||  ||||| ||||||||||||||||  || || || |||||| ||||    
T  25292643 catctttgagttgttgtagccataccttaatagagcgatctgtgacttgtttctgctcagcatcttcaagaacagcctatatcagatccaaggtgattga 25292544  T
Q  132 tagtttttcagcctttgacttgattccagatagagttgcaaattcgtttt 181  Q
    ||| |||||||| ||||||||||||| ||| |  ||||||||||| ||||    
T  25292543 tagcttttcagcttttgacttgattctagaaatggttgcaaattcatttt 25292494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 26708814 - 26708854
Alignment:
Q  119 ctaaggtggttgatagtttttcagcctttgacttgattcca 159  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  26708814 ctaaggtggttgataggttttcagcctttgacttgattcca 26708854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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